mRNA_H-canaliculatus_F_contig14904.3704.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14904.3704.1
Unique NamemRNA_H-canaliculatus_F_contig14904.3704.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: D7FVL8_ECTSI (Cnd3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL8_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 4.140e-37
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 1
Query:   46 QLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
            QLVLRTQDVKESVRRAAFRTLGEDVSSK L PQQRVTL+KRG +DSSEAVV+ACRFM+CVHWFRDA+YDP+ELLQRL++
Sbjct:  224 QLVLRTQDVKESVRRAAFRTLGEDVSSKLLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPMELLQRLNV 302          
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A6H5L8W1_9PHAE (Cnd3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W1_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.470e-24
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 1
Query:   67 DVKESVRRAAFRTLG--EDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
            DV+++   A  +T+G  + VSSK L PQQRVTL+KRG +DSSEAVV+ACRFM+CVHWFRDA+YDP+ELLQRLD+
Sbjct:  122 DVRQAALAAVTKTVGMFDQVSSKLLSPQQRVTLVKRGLSDSSEAVVDACRFMVCVHWFRDAEYDPMELLQRLDV 195          
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: UPI001E1DD553 (condensin complex subunit 3 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1DD553)

HSP 1 Score: 64.7 bits (156), Expect = 4.300e-10
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
            K+  Q+V RT+DVKE+VR+ A++ L E V  K +   QRV LL+ G  D S AV +A +  L   WFR ++ D + LL RLD+
Sbjct:  175 KTLPQIVGRTRDVKEAVRKLAYQVLAEKVHMKAMSIAQRVMLLQHGLNDRSAAVKQATQKHLLQGWFRFSEGDILMLLHRLDV 257          
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A6P7X943_9AMPH (LOW QUALITY PROTEIN: condensin complex subunit 3 n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7X943_9AMPH)

HSP 1 Score: 64.3 bits (155), Expect = 5.870e-10
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
            K+  Q+V RT D+K+ VR+ A++ L E +  + L   QRV LL++G  D S+AV E  +  L   W R  D D +ELL RLD+
Sbjct:  211 KTLPQIVGRTMDIKDVVRKLAYQVLSEKIHMRALSIAQRVQLLQQGLNDRSDAVKEVMQKKLLQAWLRFCDGDVLELLHRLDV 293          
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A384BP39_URSMA (Non-SMC condensin I complex subunit G n=33 Tax=Carnivora TaxID=33554 RepID=A0A384BP39_URSMA)

HSP 1 Score: 63.2 bits (152), Expect = 1.500e-9
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
            K+  Q+V RT+DVKE+VR+ A++ L E V  + +   QRV LL++G  D S+AV +A +  L   W R  + + +ELL RLD+
Sbjct:  208 KTLPQIVGRTKDVKEAVRKLAYQVLAEKVHMRAMSIAQRVMLLQQGLNDRSDAVKQAVQKHLLQGWLRFTEGNILELLHRLDV 290          
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A1S2ZE08_ERIEU (condensin complex subunit 3 n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S2ZE08_ERIEU)

HSP 1 Score: 62.8 bits (151), Expect = 2.050e-9
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
            K+  Q+V RT+DVKESVR+ A++ L E V  + L   QRV LL++G  D S+ V +A    L   W R ++   +ELL RLD+
Sbjct:  208 KTLPQIVGRTKDVKESVRKLAYQILAEKVHMRALSIAQRVMLLQQGLNDRSDVVKQAVHKPLLQGWLRFSEGSILELLHRLDV 290          
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A6P8RK31_GEOSA (condensin complex subunit 3 isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8RK31_GEOSA)

HSP 1 Score: 60.5 bits (145), Expect = 1.330e-8
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
            K+  Q+V RT D+K++VR+ A++ L E +  + L   QRV LL++G  D S+AV E  +  L   W R  + D +ELL  LDI
Sbjct:  237 KTLPQIVGRTMDIKDAVRKLAYQVLSEKIHIRALSIAQRVQLLQQGLNDRSDAVKEVMQKKLLQAWLRFCNGDVLELLHCLDI 319          
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: B3SB21_TRIAD (Uncharacterized protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3SB21_TRIAD)

HSP 1 Score: 59.7 bits (143), Expect = 2.460e-8
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   46 QLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
            +++ RT+D+KESVRR A++ L E V  K L   QR+ LL+ G  D S+ +   C+  L  +W      + + LLQ LD+
Sbjct:  173 EIIERTKDIKESVRRVAYQVLAERVGIKSLTINQRLDLLENGLKDRSKGIQLICKGKLLTNWLVSLGSNVLVLLQHLDV 251          
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: UPI00112ED6C8 (condensin complex subunit 3 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112ED6C8)

HSP 1 Score: 59.7 bits (143), Expect = 2.470e-8
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI 282
            K+  ++V RT DVK+ VR+ A++ L E +  + L   QRV LL++G  D S+ V E  +  +   W R  + D +ELL RLD+
Sbjct:  209 KTLQEIVGRTMDVKDVVRKLAYQVLSEKIHMRALSIAQRVQLLQQGLNDRSDGVKEVIQKKILQTWLRYCEGDVLELLHRLDV 291          
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Match: A0A8B6Y3D3_HYDVU (condensin complex subunit 3-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6Y3D3_HYDVU)

HSP 1 Score: 57.4 bits (137), Expect = 9.760e-8
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   34 KSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTLLKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLD 279
            K+   L++RT+D+K+  R+AA+ TL E VS + L   QR++LL  G  + S+ V ++C  ML   W R  D + V+LL+ LD
Sbjct:   74 KTLPHLIVRTRDIKDLNRKAAYLTLSEKVSVRALTIAQRISLLTFGLNERSDMVRQSCIHML-KQWLRKFDNNVVKLLEALD 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14904.3704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FVL8_ECTSI4.140e-3786.08Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L8W1_9PHAE1.470e-2467.57Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI001E1DD5534.300e-1044.58condensin complex subunit 3 n=1 Tax=Echinops telfa... [more]
A0A6P7X943_9AMPH5.870e-1042.17LOW QUALITY PROTEIN: condensin complex subunit 3 n... [more]
A0A384BP39_URSMA1.500e-942.17Non-SMC condensin I complex subunit G n=33 Tax=Car... [more]
A0A1S2ZE08_ERIEU2.050e-943.37condensin complex subunit 3 n=1 Tax=Erinaceus euro... [more]
A0A6P8RK31_GEOSA1.330e-840.96condensin complex subunit 3 isoform X1 n=2 Tax=Geo... [more]
B3SB21_TRIAD2.460e-837.97Uncharacterized protein (Fragment) n=2 Tax=Trichop... [more]
UPI00112ED6C82.470e-838.55condensin complex subunit 3 isoform X1 n=2 Tax=Rhi... [more]
A0A8B6Y3D3_HYDVU9.760e-840.24condensin complex subunit 3-like n=1 Tax=Hydra vul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14904contigH-canaliculatus_F_contig14904:118..942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue9.6e-32
Seed eggNOG ortholog2880.D7FVL8
Preferred nameYCG1
KEGG koko:K06678
KEGG Pathwayko04111,map04111
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045786,GO:0045934,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071840,GO:0080090,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:2000241,GO:2000242
EggNOG free text desc.complex. Subunit
EggNOG OGsCOG5218@1,KOG2025@2759
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14904.3704.1prot_H-canaliculatus_F_contig14904.3704.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14904 127..942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.475236-UTR-H-canaliculatus_F_contig14904:117..1261622929233.475236-UTR-H-canaliculatus_F_contig14904:117..126Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14904 118..126 +
1696845728.50893-UTR-H-canaliculatus_F_contig14904:117..1261696845728.50893-UTR-H-canaliculatus_F_contig14904:117..126Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14904 118..126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929233.4903376-CDS-H-canaliculatus_F_contig14904:126..2341622929233.4903376-CDS-H-canaliculatus_F_contig14904:126..234Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14904 127..234 +
1696845728.5225387-CDS-H-canaliculatus_F_contig14904:126..2341696845728.5225387-CDS-H-canaliculatus_F_contig14904:126..234Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14904 127..234 +
1622929233.5058446-CDS-H-canaliculatus_F_contig14904:777..9421622929233.5058446-CDS-H-canaliculatus_F_contig14904:777..942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14904 778..942 +
1696845728.5320184-CDS-H-canaliculatus_F_contig14904:777..9421696845728.5320184-CDS-H-canaliculatus_F_contig14904:777..942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14904 778..942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14904.3704.1

>prot_H-canaliculatus_F_contig14904.3704.1 ID=prot_H-canaliculatus_F_contig14904.3704.1|Name=mRNA_H-canaliculatus_F_contig14904.3704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
MPIPRIPPKSPAQLVLRTQDVKESVRRAAFRTLGEDVSSKHLQPQQRVTL
LKRGFADSSEAVVEACRFMLCVHWFRDADYDPVELLQRLDI
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mRNA from alignment at H-canaliculatus_F_contig14904:118..942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14904.3704.1 ID=mRNA_H-canaliculatus_F_contig14904.3704.1|Name=mRNA_H-canaliculatus_F_contig14904.3704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=825bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14904:118..942+ (Hapterophycus canaliculatus Oshoro5f female)
GCAATCCCCATGCCCATCCCTCGGATCCCGCCGAAATCACCCGCGCAGCT CGTGCTCCGGACGCAAGACGTGAAGGAGAGCGTCCGCAGGGCAGCATTCC GCACGCTGGGCGAGGACGTAAGTAAGCGGTCGCTGTTCGCCTTCGGTGCT GTACGCCGCCGAGGCGCTCTGTTGCCGAGCAGTCAGCAAGCGGCTGTTCG GAGGACCCATTAGGGGGGTGCCTCTCTGCCGGCTTATTTGCCTGCGTCTG TGTTTGTCCAGGAGCCACCGGCAGCTTTCCACGTGTGTCCTACGAGATGC TCAACCCGAATAGGTTGAGCAAAATCTAGCGCTGTGTTTTTGCAGATGGG AGGGTCCACCACAAGAGAAGAGCCACGAGGATGAAAAATATGGCCGGCGA GGCCCGTCTCGACCCCGGTAACCCGCCCTGTCGACCACTCAGTGCCGCGG CCCGGCATGTCCTCTCCTGGCGCTGGCGCCGGCGTATCTGCCTATCTTGT GCGCTGGCGCATCTGCATATCTTGTGTGGCATAGCTGAGACGTTTTTGAC ACAGTCTCTGGTGCGCATCCACCCGCCAATCAAAACACCCTACCGCTAAG ACAGAATTATGTCGCACCCCCACCCCCCCGCGCCATCCCCCGCCCTCGAA ATTACCAAAGGTGTCGTCTAAGCACCTACAGCCCCAGCAGAGGGTGACGC TCTTGAAAAGGGGTTTCGCGGACAGCTCGGAGGCCGTCGTGGAAGCTTGC CGCTTCATGCTGTGCGTCCACTGGTTCCGTGACGCGGACTACGATCCCGT GGAGCTGCTGCAACGCCTGGACATC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14904:118..942+

>mRNA_H-canaliculatus_F_contig14904.3704.1 ID=mRNA_H-canaliculatus_F_contig14904.3704.1|Name=mRNA_H-canaliculatus_F_contig14904.3704.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14904:118..942+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCATCCCTCGGATCCCGCCGAAATCACCCGCGCAGCTCGTGCTCCG
GACGCAAGACGTGAAGGAGAGCGTCCGCAGGGCAGCATTCCGCACGCTGG
GCGAGGACATGCCCATCCCTCGGATCCCGCCGAAATCACCCGCGCAGCTC
GTGCTCCGGACGCAAGACGTGAAGGAGAGCGTCCGCAGGGCAGCATTCCG
CACGCTGGGCGAGGACGTGTCGTCTAAGCACCTACAGCCCCAGCAGAGGG
TGACGCTCTTGAAAAGGGGTTTCGCGGACAGCTCGGAGGCCGTCGTGGAA
GCTTGCCGCTTCATGCTGTGCGTCCACTGGTTCCGTGACGCGGACTACGA
TCCCGTGGAGCTGCTGCAACGCCTGGACATCGTGTCGTCTAAGCACCTAC
AGCCCCAGCAGAGGGTGACGCTCTTGAAAAGGGGTTTCGCGGACAGCTCG
GAGGCCGTCGTGGAAGCTTGCCGCTTCATGCTGTGCGTCCACTGGTTCCG
TGACGCGGACTACGATCCCGTGGAGCTGCTGCAACGCCTGGACATC
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