mRNA_H-canaliculatus_F_contig14833.3662.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14833.3662.1
Unique NamemRNA_H-canaliculatus_F_contig14833.3662.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: A0A6H5L0I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 3.330e-47
Identity = 84/103 (81.55%), Postives = 91/103 (88.35%), Query Frame = 1
Query:    7 KTKGFRRAEAMLALVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLWYV 315
            + K  R+AEAML LVLPSGFP SV  PY AYAGWQF GM ASAAAGVMSTQALLYAMG+G GA+PLAATLNWVIKDGLGQLGGVAF+SLV+TRFDANPKLW +
Sbjct:  162 EAKAVRKAEAMLGLVLPSGFPGSVHPPYMAYAGWQFTGMAASAAAGVMSTQALLYAMGVGVGALPLAATLNWVIKDGLGQLGGVAFSSLVSTRFDANPKLWRI 264          
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: D8LJS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS3_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.550e-45
Identity = 82/93 (88.17%), Postives = 85/93 (91.40%), Query Frame = 1
Query:   37 MLALVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLWYV 315
            ML LVLPSGFP SV  PY AYAGWQF GM ASAAAGVMSTQALLYAMGLGAGA+PLAATLNWVIKDGLGQLGGVAF+SLV+TRFDANPKLW V
Sbjct:    1 MLGLVLPSGFPASVHPPYMAYAGWQFTGMAASAAAGVMSTQALLYAMGLGAGALPLAATLNWVIKDGLGQLGGVAFSSLVSTRFDANPKLWRV 93          
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: A0A835YUA2_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.530e-36
Identity = 64/90 (71.11%), Postives = 79/90 (87.78%), Query Frame = 1
Query:   40 LALVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLW 309
            LA +LP+G+P++V   Y +Y GWQF  M+ S+AAGV+STQALL+A+GLG+GAIPLAA LNWVIKDGLGQLGGV F+S+V+TRFDANPKLW
Sbjct:    1 LATILPAGYPEAVNAGYGSYTGWQFTSMVFSSAAGVLSTQALLHAVGLGSGAIPLAAALNWVIKDGLGQLGGVIFSSMVSTRFDANPKLW 90          
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: A0A835YMG5_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.390e-36
Identity = 63/102 (61.76%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    4 PKTKGFRRAEAMLALVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLW 309
            P+ +       ++A +LP+G+PDSVR  Y  Y  WQ + M+ ++AAGV+STQALL+A+GLGAGA+PLAA LNWV+KDGLGQLGG+AF++LVNTRFDANPK+W
Sbjct:   70 PRGRAADAVRGLVATILPAGYPDSVRPGYARYVRWQLSSMVCTSAAGVLSTQALLHAVGLGAGAVPLAAALNWVVKDGLGQLGGIAFSALVNTRFDANPKMW 171          
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: W7TSK4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSK4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.960e-29
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   31 EAMLALVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLW 309
            E  L  +LP G+P SV+  Y  Y   Q    +AS+A GV+STQ+LLYAMGLGAGAIPLAA LNW+IKDG+GQ+GG+ F S+VN RFDANPK W
Sbjct:  109 EDALRALLPRGYPRSVQKGYVEYVKLQMTASLASSAVGVLSTQSLLYAMGLGAGAIPLAAALNWIIKDGIGQVGGIVFASVVNDRFDANPKRW 201          
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: T0RLK8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RLK8_SAPDV)

HSP 1 Score: 115 bits (287), Expect = 5.210e-28
Identity = 61/108 (56.48%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    4 PKTKGFRRAEAMLA----LVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLWYV 315
            P T   RRA+ +      L LP  +  S  H Y  YA WQF G +A  A GV+S Q+LLYA+GL +GAIP+AA LNWVIKDGLGQ GGV F SLVN RFD++PK W V
Sbjct:   63 PTTDVLRRAQQLPHYLEDLFLPRDYKTSTTHDYLPYAKWQFVGSVAGTACGVLSMQSLLYAIGLQSGAIPMAAALNWVIKDGLGQFGGVLFASLVNHRFDSDPKRWRV 170          
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: A0A5D6YB24_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB24_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.030e-27
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 1
Query:   22 RRAEAMLALVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLW 309
            R AE +  L LP     SV   Y  YA W F G +ASAA+GV+S Q+LLYA+GLGAG+IP AA +NWV+KDGLGQ GGV F SLVN R+DA+PK W
Sbjct:   64 RAAEFLWDLFLPKDAATSVSKDYFPYAKWYFVGSIASAASGVLSMQSLLYAIGLGAGSIPTAAAVNWVLKDGLGQFGGVLFASLVNNRYDADPKRW 159          
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: A0A5A8CKM9_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKM9_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 1.310e-27
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 1
Query:   37 MLALVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLW 309
            +L  VLP G+P SV   Y  YA W   G  ASAAAGV+S QALL+A+G GAGA+P+AA L WV+KDGLGQLGGV F S VNTRFD++ K W
Sbjct:   83 VLRHVLPQGYPVSVAPSYAQYAAWSAVGSTASAAAGVLSMQALLHAVGAGAGAVPMAAALQWVVKDGLGQLGGVLFVSFVNTRFDSDAKRW 173          
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: A0A067C7I2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C7I2_SAPPC)

HSP 1 Score: 113 bits (283), Expect = 1.880e-27
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   46 LVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLWYV 315
            L LP  +  S  H Y  YA WQF G +A  A GV+S Q+LLYA+GL +GAIP+AA LNWVIKDGLGQ GGV F SLVN RFD++PK W V
Sbjct:   82 LFLPRDYQTSTTHDYLPYAKWQFVGSVAGTACGVLSMQSLLYAIGLQSGAIPMAAALNWVIKDGLGQFGGVLFASLVNHRFDSDPKRWRV 171          
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Match: A0A2D4BQ69_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQ69_PYTIN)

HSP 1 Score: 113 bits (282), Expect = 3.600e-27
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   22 RRAEAMLALVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVMSTQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANPKLWYV 315
            R  + +  L LP  F  SV   Y  YA W F G +ASAA+GV+S Q+LLYA+GLGAG+IP AA +NWV+KDGLGQ GGV F S+VN R+DA+PK W V
Sbjct:  132 RAIDFLSDLFLPRDFRRSVTPDYFPYAKWYFVGTVASAASGVLSMQSLLYAIGLGAGSIPTAAAINWVLKDGLGQFGGVMFASIVNNRYDADPKRWRV 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14833.3662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0I8_9PHAE3.330e-4781.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJS3_ECTSI1.550e-4588.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUA2_9STRA1.530e-3671.11Vitamin B6 photo-protection and homoeostasis-domai... [more]
A0A835YMG5_9STRA2.390e-3661.76Vitamin B6 photo-protection and homoeostasis-domai... [more]
W7TSK4_9STRA2.960e-2962.37Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
T0RLK8_SAPDV5.210e-2856.48Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A5D6YB24_9STRA1.030e-2760.42Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A5A8CKM9_CAFRO1.310e-2762.64Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A067C7I2_SAPPC1.880e-2762.22Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A2D4BQ69_PYTIN3.600e-2758.16Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14833contigH-canaliculatus_F_contig14833:897..1996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue8.3e-38
Seed eggNOG ortholog2880.D8LJS3
EggNOG free text desc.response to UV-B
EggNOG OGsKOG4249@1,KOG4249@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929227.2637064-CDS-H-canaliculatus_F_contig14833:896..10581622929227.2637064-CDS-H-canaliculatus_F_contig14833:896..1058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14833 897..1058 -
1696845725.7222059-CDS-H-canaliculatus_F_contig14833:896..10581696845725.7222059-CDS-H-canaliculatus_F_contig14833:896..1058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14833 897..1058 -
1622929227.2822256-CDS-H-canaliculatus_F_contig14833:1831..19961622929227.2822256-CDS-H-canaliculatus_F_contig14833:1831..1996Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14833 1832..1996 -
1696845725.735232-CDS-H-canaliculatus_F_contig14833:1831..19961696845725.735232-CDS-H-canaliculatus_F_contig14833:1831..1996Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14833 1832..1996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14833.3662.1prot_H-canaliculatus_F_contig14833.3662.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14833 897..1996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14833.3662.1

>prot_H-canaliculatus_F_contig14833.3662.1 ID=prot_H-canaliculatus_F_contig14833.3662.1|Name=mRNA_H-canaliculatus_F_contig14833.3662.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
FPKTKGFRRAEAMLALVLPSGFPDSVRHPYTAYAGWQFAGMMASAAAGVM
STQALLYAMGLGAGAIPLAATLNWVIKDGLGQLGGVAFTSLVNTRFDANP
KLWYVDLG*
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mRNA from alignment at H-canaliculatus_F_contig14833:897..1996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14833.3662.1 ID=mRNA_H-canaliculatus_F_contig14833.3662.1|Name=mRNA_H-canaliculatus_F_contig14833.3662.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1100bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14833:897..1996- (Hapterophycus canaliculatus Oshoro5f female)
TTTCCAAAGACCAAAGGTTTTAGAAGAGCAGAGGCAATGCTGGCACTGGT GCTGCCGAGCGGATTCCCGGATTCTGTGCGGCACCCGTACACAGCGTACG CGGGTTGGCAGTTCGCGGGAATGATGGCATCAGCTGCTGCGGGGGTGATG TCGACCCAAGCCTTGGTAAGGCACGCCTTTTGTCCACATTCCTACGTCGT TGCTGGTGGGTTGTACGGCCGCGGAAGCCCGCGTTTTGGTGTCGTCGCTG TTGGTGATGTGTCGATACCGTTCTTGCTGTTGCTCTTGCTGTTGCTCTCG TTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTACTGCTGCTGAT GCTGCTGCTACTGCTGCTCCTGCTACTGCTCTCGACCCTACGGTGCTTTT GCTGGTGGTGGTGCGGCTGTCGCTGTCTTTGTTGCGGCCGGTTTTGCCTT CGCACACGAAATTTTAGATGTTCTTGCATTTGCGAAGCTTCACAATTCCG TGCCTTTAAGCCAGCGGGAGACGTTGTGACGGACTTTCCGCACAACACTA ACTGCCAGAGCGATAAGCATTGTGAGACCGGAACAAGCAGGGCCCTTCCG AGGAGAAGCATCACAAAAAATCTCCTCTGAATGAGAAAACGACAACCCAG GAGCCGAAAGACAGAAAAGGACGGAGCGCGTCGCTCCTTCCCGCGGAGCC AGTAGCCCCTGAGAAAGCCACAAGCCGAAGCACAGGGAACAGATCTGAAT GTACCCTATGCGCCCCGAACACGCCAGAATGCGTGCTCCCTCCGATCTGA AGGTCGGCGAGGCGACGCACCTCTCCCGACGATTCAAACCCGGCGTGTAC CCGGGGAATGTCAAGGCTGTCAAAGCACGCAAATCGGCACAAACGCGACC ACGGCACCCCCTCGGTATTGCCTGCGCACCCCCCGCAGCTCTACGCCATG GGGCTGGGAGCCGGGGCCATTCCGCTCGCGGCGACGTTGAACTGGGTCAT CAAGGATGGTCTCGGGCAGCTTGGCGGCGTGGCTTTCACCAGCCTGGTCA ACACCCGTTTCGACGCTAATCCGAAGCTGTGGTACGTGGATCTCGGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14833:897..1996-

>mRNA_H-canaliculatus_F_contig14833.3662.1 ID=mRNA_H-canaliculatus_F_contig14833.3662.1|Name=mRNA_H-canaliculatus_F_contig14833.3662.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14833:897..1996- (Hapterophycus canaliculatus Oshoro5f female)
TTTCCAAAGACCAAAGGTTTTAGAAGAGCAGAGGCAATGCTGGCACTGGT
GCTGCCGAGCGGATTCCCGGATTCTGTGCGGCACCCGTACACAGCGTACG
CGGGTTGGCAGTTCGCGGGAATGATGGCATCAGCTGCTGCGGGGGTGATG
TCGACCCAAGCCTTGTTTCCAAAGACCAAAGGTTTTAGAAGAGCAGAGGC
AATGCTGGCACTGGTGCTGCCGAGCGGATTCCCGGATTCTGTGCGGCACC
CGTACACAGCGTACGCGGGTTGGCAGTTCGCGGGAATGATGGCATCAGCT
GCTGCGGGGGTGATGTCGACCCAAGCCTTGCTCTACGCCATGGGGCTGGG
AGCCGGGGCCATTCCGCTCGCGGCGACGTTGAACTGGGTCATCAAGGATG
GTCTCGGGCAGCTTGGCGGCGTGGCTTTCACCAGCCTGGTCAACACCCGT
TTCGACGCTAATCCGAAGCTGTGGTACGTGGATCTCGGTTGACTCTACGC
CATGGGGCTGGGAGCCGGGGCCATTCCGCTCGCGGCGACGTTGAACTGGG
TCATCAAGGATGGTCTCGGGCAGCTTGGCGGCGTGGCTTTCACCAGCCTG
GTCAACACCCGTTTCGACGCTAATCCGAAGCTGTGGTACGTGGATCTCGG
TTGA
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