mRNA_H-canaliculatus_F_contig1466.3575.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: D7FRN2_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN2_ECTSI) HSP 1 Score: 485 bits (1248), Expect = 1.610e-155 Identity = 237/268 (88.43%), Postives = 255/268 (95.15%), Query Frame = 1
Query: 1 VPYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERLSRHMSRNQLIRLNWWQRLTAGVHPNILSYCPQDNNHGMFVPPSTITHQVVVCTCGTAGMLSMLGVDDTYFTHIFVDESSNAMETELLVPLSYAGSSAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLMGQEMYSKHAETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKTKPFPLVFYGIQ 804
VPYIIFGPPGTGKTCTVIE+ILQLVKL+PE RILA GPSDT+ADVICERLSRHMSR+QL+R+NWWQRLTAGVHPNILSYCPQD+N GMFVPPSTITHQVVVCTCGTAGMLS+LGVD+ YFTHIFVDESSNAMETELLVPLSYAG AQIILCGDPRQLGAAVRSP+ARALGLEVSLQERLM QEMYSKHA+ P ALS++T+ GA+ VRCMTQLLNNYRAHEVLLTLPSAMFYGG+LVRSAERSQTDSML WEELP+TK FPL+FYGIQ
Sbjct: 773 VPYIIFGPPGTGKTCTVIESILQLVKLRPECRILAVGPSDTSADVICERLSRHMSRDQLVRINWWQRLTAGVHPNILSYCPQDSNRGMFVPPSTITHQVVVCTCGTAGMLSVLGVDENYFTHIFVDESSNAMETELLVPLSYAGR-AQIILCGDPRQLGAAVRSPAARALGLEVSLQERLMEQEMYSKHAQAPTALSSATSNGAADVRCMTQLLNNYRAHEVLLTLPSAMFYGGSLVRSAERSQTDSMLTWEELPETKAFPLLFYGIQ 1039
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: A0A6H5KSW5_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW5_9PHAE) HSP 1 Score: 417 bits (1071), Expect = 1.430e-136 Identity = 202/234 (86.32%), Postives = 222/234 (94.87%), Query Frame = 1
Query: 103 ACGPSDTAADVICERLSRHMSRNQLIRLNWWQRLTAGVHPNILSYCPQDNNHGMFVPPSTITHQVVVCTCGTAGMLSMLGVDDTYFTHIFVDESSNAMETELLVPLSYAGSSAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLMGQEMYSKHAETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKTKPFPLVFYGIQ 804
A GPSDT+ADVICERLSRHMSR+QL+R+NWWQRLTAGVHPNILSYCPQD+NHGMF+PPSTITHQVVVCTCGTAGMLS+LGVD+ YFTHIFVDESSNAMETELLVPLSYAG AQIILCGDPRQLGAAVRSP+ARALGLEVSLQERLM ++MYSKHA+ P ALS++T+ A+ VRCMTQLLNNYRAHEVLLTLPSAMFYGG+LVRSAERSQTDSML WEELP+TK FPL+FYG+Q
Sbjct: 505 AVGPSDTSADVICERLSRHMSRDQLVRINWWQRLTAGVHPNILSYCPQDSNHGMFLPPSTITHQVVVCTCGTAGMLSVLGVDENYFTHIFVDESSNAMETELLVPLSYAGR-AQIILCGDPRQLGAAVRSPAARALGLEVSLQERLMEKDMYSKHAKAPTALSSATSNEATDVRCMTQLLNNYRAHEVLLTLPSAMFYGGSLVRSAERSQTDSMLTWEELPETKAFPLLFYGVQ 737
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: A0A4D9D490_9STRA (RNA helicase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D490_9STRA) HSP 1 Score: 231 bits (589), Expect = 6.360e-66 Identity = 130/310 (41.94%), Postives = 178/310 (57.42%), Query Frame = 1
Query: 1 VPYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERLSRHMSRNQLIRLNWWQRLTAGVHPNILSYCPQDNNHGMFV-----PPSTITHQVVVCTCGTAGMLSML---GVDDTYFTHIFVDESSNAMETELLVPLSYAGSSAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLM---------------GQEMYSKHAETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKT---------------------KPFPLVFYG 798
+PYI++GPPGTGKT TVIE ILQ+ + P S++LA PSD AAD++ ERLS HM QL RLNW QRL A + P++L Y D +F P S + HQV+V TC ++G+LS+L G F+HI VDE+S A++ E++VPLS AG ++L GDP+QLGA R+P + LGL SLQERLM E +H + +++ G G RC+T L NYR+H+ ++ +PS MFY TL + ++S DSML WE LP + K FP++F+G
Sbjct: 538 LPYILYGPPGTGKTLTVIEAILQICRHHPRSKVLAVAPSDVAADILAERLSEHMEPKQLFRLNWCQRLMASMKPSLLRYSCWDAKVSLFSLPDDEPRSILEHQVIVSTCASSGLLSLLDISGQTPVSFSHILVDEASQALQPEVMVPLSLAGPDTGVVLAGDPKQLGAVTRNPLVQELGLARSLQERLMETCSIYRTQLAAEASATEGGVEHPKGSEHRTSAPKEGDPG-RCLTMLRKNYRSHQAIIEVPSRMFYDRTLEQHGDKSVIDSMLAWEMLPGSSSATALDTAPLRSTARAQAGPKGFPILFWG 846
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: A0A835YTD6_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD6_9STRA) HSP 1 Score: 220 bits (560), Expect = 1.140e-61 Identity = 133/326 (40.80%), Postives = 171/326 (52.45%), Query Frame = 1
Query: 1 VPYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERLSRHMSRNQLIRLNWWQRLTAGVHPNILSYCPQDNNHGMFVPPST--ITHQVVVCTCGTAGMLSMLGV-----------------------DDTYFTHIFVDESSNA-----------METELLVPLSYAGSSAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLMGQEMYSKH--AETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKT--------------------KPFPLVFYGIQ 804
+PYIIFGPPGTGKT T+ E LQ++ ++R+L C PSD AADV+ RL+ H++ Q++RL WWQR T + ++L YC D + P+ ++QV+V TCG AG ++ML FTHIF DESS A +E ELLVPL+ A IIL GDPRQLGA VRSP A LGL SLQERLM +Y E L+ S +RC +QL +NYR+H VLL +PS +FY GTLV A++ +S+ +WE LP FPL YGIQ
Sbjct: 1103 LPYIIFGPPGTGKTMTMTEAALQVLIHTRDARVLVCAPSDAAADVVARRLAPHLTPQQMLRLCWWQRPTESLPSSLLQYCCIDPTVSLLALPTEPLSSYQVIVTTCGAAGQIAMLSELQQQRSDSSEHEAWWPIAAALPQQRPRFTHIFCDESSQAKGADLRVRKEALEAELLVPLALASDDTSIILAGDPRQLGATVRSPLAARLGLGTSLQERLMALPLYGAEDGGEDMETLAAS-------MRCYSQLTSNYRSHRVLLEVPSRLFYRGTLVERADKQLVESLCEWEGLPPVVRQRQEGQDGEEGGEEGGGPAHFPLFMYGIQ 1421
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: A7RTX4_NEMVE (RNA helicase (Fragment) n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RTX4_NEMVE) HSP 1 Score: 206 bits (524), Expect = 2.900e-60 Identity = 117/270 (43.33%), Postives = 165/270 (61.11%), Query Frame = 1
Query: 4 PYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERLSRH--MSRNQLIRLNWWQRLTAGVHPNILSYCPQDNNHGMFVPPSTITHQVVVCTCGTAGMLSMLGVDDTYFTHIFVDESSNAMETELLVPLSYA-GSSAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLMGQEMYSKHAETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKTKPFPLVFYGIQ 804
PY++FGPPGTGKT T++E ILQ+ P SR++AC PS++AAD++ RL R + +IRLN +QR+ + +I YC ++ + ++++VCTC TAG L LG+ +FTH+FVDE+ A E E L+P+ A G QIIL GDP QLG +RSP A + GL VSL ERLM +Y++ + G +T+L+NNYR+H LL LPSA+FY L AER+ + + QWE LP T+ PLVF+G++
Sbjct: 36 PYLLFGPPGTGKTVTLVEAILQVFHRVPSSRVIACAPSNSAADLMAVRLHRSGFIQEGDMIRLNAFQRVQE-IPESINKYCVDTDSLQL-----AAHYRIIVCTCSTAGQLFSLGLKPGHFTHVFVDEAGQATEPECLIPIGLAAGEDGQIILAGDPFQLGPVLRSPVAISYGLNVSLLERLMSGLLYARDE------TRFVDHGCYDPLLVTKLVNNYRSHPSLLRLPSALFYHSELRVCAERTMREQLSQWEMLP-TQGTPLVFHGLK 292
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: A0A6I9NKT8_9TELE (putative helicase Mov10l1 isoform X1 n=11 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9NKT8_9TELE) HSP 1 Score: 211 bits (538), Expect = 8.560e-59 Identity = 117/273 (42.86%), Postives = 161/273 (58.97%), Query Frame = 1
Query: 1 VPYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERL--SRHMSRNQLIRLNWWQRLTAGVHP--NILSYCPQDNNHGMFVPPSTITHQVVVCTCGTAGMLSMLGVDDTYFTHIFVDESSNAMETELLVPLSYAGS-SAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLMGQEMYSKHAETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKTKPFPLVFYGIQ 804
+PY++FGPPGTGKT TVIE ILQ+ P SR+L C PS++AAD+IC RL S + L R+N R + + S +D H F H++VV TC ++GM +G+ +FTH+F+DE+ A E E L+P+SY Q++L GDP QLG V+S A A GL VSL ERLM +Y++H + +T+L+ NYR+HE LLTLPS +FY G L A+R DS+ QW+ LPK K FPL+F+G++
Sbjct: 733 IPYVLFGPPGTGKTITVIEAILQVYHFLPSSRVLVCTPSNSAADLICTRLHHSGFLHAASLARVNPTSRQEESIPEALRVYSKAGEDIRHASF-------HRIVVSTCSSSGMFHNIGIQVGHFTHVFLDEAGQATEPESLIPMSYLSERDGQVVLAGDPCQLGPVVKSKLATAFGLGVSLMERLMANPLYARHD------------WGYNPKLVTKLIFNYRSHEALLTLPSKLFYKGELCFKAQRDVVDSLCQWKTLPK-KEFPLLFHGVR 985
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: A0A6P7TU24_OCTVU (RNA helicase n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7TU24_OCTVU) HSP 1 Score: 209 bits (532), Expect = 9.640e-59 Identity = 116/271 (42.80%), Postives = 167/271 (61.62%), Query Frame = 1
Query: 1 VPYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERLSRH--MSRNQLIRLNWWQRLTAGVHPNILSYCPQDNNHGMFVPPSTITHQVVVCTCGTAGMLSMLGVDDTYFTHIFVDESSNAMETELLVPLSY-AGSSAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLMGQEMYSKHAETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKTKPFPLVFYGIQ 804
+PYI+FGPPGTGKT T++ETILQ++ P SRILAC PS++AAD++ ERL + + ++RLN +QR + I YC NN + V +++++ TC +G+L G+ +FTH+F+DE+ A E E L+P+ AG+ Q IL GDP QLG + SP A++ GLE+S ERLMG E+YS+ ET S G +T+L+ NYR+H LL LPS +FY L AE++ T S+ W+ LP K P++F+GI+
Sbjct: 391 MPYILFGPPGTGKTITLVETILQILTKLPGSRILACAPSNSAADLLAERLHKSGVLKLTDMVRLNAFQRNEDNIPDKIRPYCSSGNNLDIVVH-----YRIIISTCVNSGILYTYGLKPGHFTHVFIDEAGQATEPECLIPVGLVAGTDGQTILSGDPEQLGPILHSPHAKSHGLELSFLERLMGLELYSRD-ETKFVTS-----GYFDPMLVTKLIYNYRSHPALLQLPSVLFYANELEVKAEKTLTHSLCGWKSLPN-KTVPILFHGIR 649
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: A0A4Z2C875_9TELE (Uncharacterized protein n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2C875_9TELE) HSP 1 Score: 206 bits (523), Expect = 1.170e-58 Identity = 117/274 (42.70%), Postives = 163/274 (59.49%), Query Frame = 1
Query: 1 VPYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERL--SRHMSRNQLIRLNWWQRLTAGVHPNIL---SYCPQDNNHGMFVPPSTITHQVVVCTCGTAGMLSMLGVDDTYFTHIFVDESSNAMETELLVPLSYAGS-SAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLMGQEMYSKHAETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKTKPFPLVFYGIQ 804
+PY++FGPPGTGKT T+IETILQ+ P SR+L C PS++AAD+IC RL S + L R+N R + P +L S +D H + H++VV TC +AG+ +GV +FTH+F+DE+ A E E L+P+++ QI+L GDP QLG ++S A A GL VS+ ERLM +YS+H R +T+L+ NYR+HE LL LPS +FY G L A R+ DS+ QW+ LPK K FPL+F+G++
Sbjct: 180 LPYVLFGPPGTGKTITLIETILQVYHFLPNSRVLVCTPSNSAADLICLRLHQSGFLHAASLARVNASCRQEESI-PEVLRLYSKAGEDVRHASY-------HRIVVSTCSSAGLFHNIGVQVGHFTHVFLDEAGQATEPEALIPIAFISERDGQIVLAGDPCQLGPVIKSKIAAAFGLGVSMLERLMANPLYSRHD------------WGYNPRLVTKLVYNYRSHEALLVLPSKLFYRGELCVRAPRAVVDSLCQWKSLPK-KGFPLIFHGVR 432
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: A0A433SVW3_ELYCH (RNA helicase n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SVW3_ELYCH) HSP 1 Score: 210 bits (534), Expect = 2.070e-58 Identity = 122/271 (45.02%), Postives = 166/271 (61.25%), Query Frame = 1
Query: 1 VPYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERL--SRHMSRNQLIRLNWWQRLTAGVHPNILSYCPQDNNHGMFVPPSTITHQVVVCTCGTAGMLSMLGVDDTYFTHIFVDESSNAMETELLVPLSY-AGSSAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLMGQEMYSKHAETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKTKPFPLVFYGIQ 804
VPYIIFGPPGTGKT TV+E ILQ++K P SRI+AC PS++AAD+I ERL S +S+ +++RLN +QR + +IL YC N+ S +V+V TC AG + LG+ + TH+FVDE A E E L+P+ +G+ QIIL GDP+QLG + SP A+ GLE+SL ERLM +E+Y + E G +T L+NNYR+H +L LPS +FY L A+ S T ++ W LPK FP+VF+GI+
Sbjct: 587 VPYIIFGPPGTGKTITVVEAILQVLKRVPSSRIVACTPSNSAADLIAERLHLSGQVSQTEMVRLNAFQRSCDSLPESILKYCRFANDL-----ESISRFRVIVSTCVMAGNMYGLGLSAGHLTHVFVDECGQATEPECLIPVGLVSGTDGQIILAGDPKQLGPIIASPFAKMYGLEMSLLERLMSRELYQRDEEK------FGENGGFDPSLVTMLVNNYRSHPAILELPSRLFYYSQLRPHADPSLTHTLAGWSLLPKGG-FPVVFHGIR 845
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Match: UPI000C6FB1BD (RNA helicase Mov10l1-like n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=UPI000C6FB1BD) HSP 1 Score: 202 bits (513), Expect = 2.260e-58 Identity = 120/274 (43.80%), Postives = 160/274 (58.39%), Query Frame = 1
Query: 1 VPYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERL--SRHMSRNQLIRLNWWQRLTAGVHPNIL---SYCPQDNNHGMFVPPSTITHQVVVCTCGTAGMLSMLGVDDTYFTHIFVDESSNAMETELLVPLSYAGS-SAQIILCGDPRQLGAAVRSPSARALGLEVSLQERLMGQEMYSKHAETPRALSTSTARGASGVRCMTQLLNNYRAHEVLLTLPSAMFYGGTLVRSAERSQTDSMLQWEELPKTKPFPLVFYGIQ 804
+PY++FGPPGTGKT T+IE ILQ+ P SRIL C PS++AAD+IC RL S + L R+N R V P +L S +D H F H++VV TC +AGM +G+ +FTH+F+DE+ A E E L+P+S QI+L GDP QLG V+S A A GL VSL ERLM +YS+ + +T+L+ NYR+HE LL LPS +FY G L A R+ DS+ QW+ LPK K FPL+F+G++
Sbjct: 50 IPYVLFGPPGTGKTVTLIEAILQVYHFLPSSRILVCTPSNSAADLICVRLHHSGFLHAASLARVNASCRQDESV-PEVLRPYSRAGEDIRHASF-------HRIVVSTCSSAGMFHNIGLQVGHFTHVFLDEAGQATEPESLIPMSLVSERDGQIVLAGDPCQLGPIVKSKLAAAFGLGVSLLERLMANPLYSRQD------------WGYNPKLVTKLIYNYRSHESLLMLPSKLFYQGELCFKAPRAVVDSLCQWKNLPK-KGFPLLFHGVR 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1466.3575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1466.3575.1 >prot_H-canaliculatus_F_contig1466.3575.1 ID=prot_H-canaliculatus_F_contig1466.3575.1|Name=mRNA_H-canaliculatus_F_contig1466.3575.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=268bp VPYIIFGPPGTGKTCTVIETILQLVKLKPESRILACGPSDTAADVICERLback to top mRNA from alignment at H-canaliculatus_F_contig1466:20631..25621+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1466.3575.1 ID=mRNA_H-canaliculatus_F_contig1466.3575.1|Name=mRNA_H-canaliculatus_F_contig1466.3575.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4991bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1466:20631..25621+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1466:20631..25621+ >mRNA_H-canaliculatus_F_contig1466.3575.1 ID=mRNA_H-canaliculatus_F_contig1466.3575.1|Name=mRNA_H-canaliculatus_F_contig1466.3575.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1608bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1466:20631..25621+ (Hapterophycus canaliculatus Oshoro5f female)back to top |