mRNA_H-canaliculatus_F_contig145.3490.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig145.3490.1
Unique NamemRNA_H-canaliculatus_F_contig145.3490.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig145.3490.1 vs. uniprot
Match: D7FWR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR7_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.980e-40
Identity = 115/231 (49.78%), Postives = 130/231 (56.28%), Query Frame = 1 
Query:    1 ETSRPPFVDSRDVKRMLACPAEEMHLFSDPKNYRTRARYTRLALPLREIEGRIQDTIASHVRLEYRDKLKETLGTADGTASGVDRGEPEGMGTYSSTVAHAAP--------KLVNHAAAEQQKQQQQAHTATSDQGVSIKPNSCNKRRASVVFARGAV--TAPAFQPPASLRQ--QDREPATAATMELVSRAQASTATATVGTAGEGGRWQPRRGGVAMVVPTSTRNAVAA 657
            ETSRPP VDSRDVKRML CPAEEMH+FSDP NYRTR RYTRLALP REI G IQDTIAS+VR EYRDKLKE LG  D   SG+ + EP     YSS     A         K    AAA+Q +QQQQA TA           + NK RASV F  GA   T P  Q  A++       +P  A    L  +   + A A   +A +G  W+  R G AM VP  T  A AA
Sbjct:  996 ETSRPPLVDSRDVKRMLECPAEEMHMFSDPMNYRTRPRYTRLALPFREIGGIIQDTIASNVRSEYRDKLKEALGPTDARESGIHQQEP-----YSSPAGAFAEDTNTGWVHKDATAAAAQQPRQQQQAPTAEHAH------KNSNKTRASVNFDTGAAATTTPPHQQRAAVGMLAAGHKPTPAV---LAPQTATAVAAAASRSAVQGRAWRSGRDGAAMAVPMMTAKATAA 1212
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig145.3490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWR7_ECTSI1.980e-4049.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig145contigH-canaliculatus_F_contig145:52315..53572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size660
Cds size660
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig145.3490.1prot_H-canaliculatus_F_contig145.3490.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig145 52315..53572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929201.4060166-CDS-H-canaliculatus_F_contig145:52314..524761622929201.4060166-CDS-H-canaliculatus_F_contig145:52314..52476Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 52315..52476 +
1696845715.3812022-CDS-H-canaliculatus_F_contig145:52314..524761696845715.3812022-CDS-H-canaliculatus_F_contig145:52314..52476Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 52315..52476 +
1622929201.4570417-CDS-H-canaliculatus_F_contig145:52993..531651622929201.4570417-CDS-H-canaliculatus_F_contig145:52993..53165Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 52994..53165 +
1696845715.3969028-CDS-H-canaliculatus_F_contig145:52993..531651696845715.3969028-CDS-H-canaliculatus_F_contig145:52993..53165Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 52994..53165 +
1622929201.4674773-CDS-H-canaliculatus_F_contig145:53246..535721622929201.4674773-CDS-H-canaliculatus_F_contig145:53246..53572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 53247..53572 +
1696845715.4069731-CDS-H-canaliculatus_F_contig145:53246..535721696845715.4069731-CDS-H-canaliculatus_F_contig145:53246..53572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 53247..53572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig145.3490.1

>prot_H-canaliculatus_F_contig145.3490.1 ID=prot_H-canaliculatus_F_contig145.3490.1|Name=mRNA_H-canaliculatus_F_contig145.3490.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=220bp
ETSRPPFVDSRDVKRMLACPAEEMHLFSDPKNYRTRARYTRLALPLREIE
GRIQDTIASHVRLEYRDKLKETLGTADGTASGVDRGEPEGMGTYSSTVAH
AAPKLVNHAAAEQQKQQQQAHTATSDQGVSIKPNSCNKRRASVVFARGAV
TAPAFQPPASLRQQDREPATAATMELVSRAQASTATATVGTAGEGGRWQP
RRGGVAMVVPTSTRNAVAA*
back to top

mRNA from alignment at H-canaliculatus_F_contig145:52315..53572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig145.3490.1 ID=mRNA_H-canaliculatus_F_contig145.3490.1|Name=mRNA_H-canaliculatus_F_contig145.3490.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1258bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:52315..53572+ (Hapterophycus canaliculatus Oshoro5f female)
GAAACGTCAAGACCGCCGTTCGTTGACAGCAGAGACGTTAAGCGGATGCT
GGCCTGTCCGGCGGAGGAGATGCATCTGTTCAGCGACCCAAAAAACTACC
GGACGAGGGCGCGATACACCCGATTAGCTCTGCCACTCAGAGAGATCGAG
GGTCGGATTCAGGTGCCTCATGAGCTCACGAATGCATGCGTTCGTGCGCG
CCTCGGCTGTCGATGTCTTGGCGGTGCGAGGCAATGAATTTAAATTTGAA
ACCCCCATTGTTGATGGCGTGCTCTACTGCCCCACCTCCTGTCCCCCCTC
CCCTCGGACGTGTGCAACTGCAAGTGTCCGTGTGTATCTCCACAACCTCA
TAAGTCCAAGAGCAAATCAAGGGAAAGGATTTTGGAAGGGGGCCTTCTCG
GGCGTGTCCAAATGCACAGCACCGGCAGCTTTCCCGCTGCAGAGCATCCG
CAGAAGCGTTCACAATGTTATTAGTCGGCTCATGAATCTTGGCGAAATAG
CTTCCTTGCTCTTGAACCTTCTCCGTAGATACTGCTCGGCCCCCCCCATC
CGGAGGAAGCGGGAAGAATAAGCAATCAAAGCGTATCTCAACGCATGTAC
GCCTGGCGTGCCAGGACCAATTCATTGCTGCTGCATCCATCTACCCGCCA
CCAACGTGCCTATTTCCATCACATACCAGGACACCATCGCAAGCCACGTG
AGGTTGGAATACCGAGACAAGCTCAAGGAGACGCTGGGCACAGCGGACGG
CACGGCAAGCGGGGTTGACAGGGGGGAGCCTGAAGGAATGGGGACTTATT
CGAGCACCGTCGCACATGCGGCACCAAAGCTCGTCAATCACGCCGCGGCG
GGTGCTCTCAACCACAGCAACATGGGTGGCATAGTTGGACCAACCAGGCC
AACAGGCAGTGTGGTCGCACACTCACCACAAGAGCAGCAGAAGCAGCAGC
AGCAAGCCCATACAGCAACCTCGGATCAGGGTGTTAGCATCAAGCCCAAC
AGCTGCAACAAGAGAAGAGCGTCCGTGGTTTTTGCCCGAGGAGCGGTAAC
AGCACCAGCATTTCAACCGCCAGCCTCCCTTCGGCAGCAAGACCGCGAAC
CAGCGACAGCAGCCACGATGGAGCTTGTCAGCCGTGCGCAAGCATCAACG
GCAACAGCAACAGTGGGTACCGCCGGGGAAGGGGGGCGGTGGCAACCACG
CCGAGGCGGGGTCGCCATGGTGGTGCCAACGTCGACGAGAAATGCCGTCG
CTGCGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig145:52315..53572+

>mRNA_H-canaliculatus_F_contig145.3490.1 ID=mRNA_H-canaliculatus_F_contig145.3490.1|Name=mRNA_H-canaliculatus_F_contig145.3490.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1320bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:52315..53572+ (Hapterophycus canaliculatus Oshoro5f female)
GAAACGTCAAGACCGCCGTTCGTTGACAGCAGAGACGTTAAGCGGATGCT
GGCCTGTCCGGCGGAGGAGATGCATCTGTTCAGCGACCCAAAAAACTACC
GGACGAGGGCGCGATACACCCGATTAGCTCTGCCACTCAGAGAGATCGAG
GGTCGGATTCAGGAAACGTCAAGACCGCCGTTCGTTGACAGCAGAGACGT
TAAGCGGATGCTGGCCTGTCCGGCGGAGGAGATGCATCTGTTCAGCGACC
CAAAAAACTACCGGACGAGGGCGCGATACACCCGATTAGCTCTGCCACTC
AGAGAGATCGAGGGTCGGATTCAGGACACCATCGCAAGCCACGTGAGGTT
GGAATACCGAGACAAGCTCAAGGAGACGCTGGGCACAGCGGACGGCACGG
CAAGCGGGGTTGACAGGGGGGAGCCTGAAGGAATGGGGACTTATTCGAGC
ACCGTCGCACATGCGGCACCAAAGCTCGTCAATCACGCCGCGGCGGGACA
CCATCGCAAGCCACGTGAGGTTGGAATACCGAGACAAGCTCAAGGAGACG
CTGGGCACAGCGGACGGCACGGCAAGCGGGGTTGACAGGGGGGAGCCTGA
AGGAATGGGGACTTATTCGAGCACCGTCGCACATGCGGCACCAAAGCTCG
TCAATCACGCCGCGGCGGAGCAGCAGAAGCAGCAGCAGCAAGCCCATACA
GCAACCTCGGATCAGGGTGTTAGCATCAAGCCCAACAGCTGCAACAAGAG
AAGAGCGTCCGTGGTTTTTGCCCGAGGAGCGGTAACAGCACCAGCATTTC
AACCGCCAGCCTCCCTTCGGCAGCAAGACCGCGAACCAGCGACAGCAGCC
ACGATGGAGCTTGTCAGCCGTGCGCAAGCATCAACGGCAACAGCAACAGT
GGGTACCGCCGGGGAAGGGGGGCGGTGGCAACCACGCCGAGGCGGGGTCG
CCATGGTGGTGCCAACGTCGACGAGAAATGCCGTCGCTGCGTGAAGCAGC
AGAAGCAGCAGCAGCAAGCCCATACAGCAACCTCGGATCAGGGTGTTAGC
ATCAAGCCCAACAGCTGCAACAAGAGAAGAGCGTCCGTGGTTTTTGCCCG
AGGAGCGGTAACAGCACCAGCATTTCAACCGCCAGCCTCCCTTCGGCAGC
AAGACCGCGAACCAGCGACAGCAGCCACGATGGAGCTTGTCAGCCGTGCG
CAAGCATCAACGGCAACAGCAACAGTGGGTACCGCCGGGGAAGGGGGGCG
GTGGCAACCACGCCGAGGCGGGGTCGCCATGGTGGTGCCAACGTCGACGA
GAAATGCCGTCGCTGCGTGA
back to top