mRNA_H-canaliculatus_F_contig1448.3471.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1448.3471.1
Unique NamemRNA_H-canaliculatus_F_contig1448.3471.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: D7FS22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS22_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 4.200e-41
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1
Query:    1 QVWIVYHSKMKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPHKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVR 246
            QVW+VYHSKMKTKQVYLHDSTYATPFSL+LWGARVRHERP    KKEAVEVVIDRWLRFRMTE+TAVAFKAMRRELSNLLVR
Sbjct: 1289 QVWVVYHSKMKTKQVYLHDSTYATPFSLMLWGARVRHERPLGHKKKEAVEVVIDRWLRFRMTENTAVAFKAMRRELSNLLVR 1370          
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: A0A835Z4K1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.310e-17
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    7 WIVYHSKMKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPH-----KKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLV 243
            +++YHS++KT+QVYLH++T  T FSLLLWG+ +RH R  +       KK A+ V +D WLRF+ TES  V FK +R++++ LL+
Sbjct:  900 YVLYHSRVKTRQVYLHETTCCTAFSLLLWGSHIRHLRHTEDTGGPTLKKRALIVAVDEWLRFKTTESIGVVFKHLRKDINELLL 983          
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: W7TVU1_9STRA (Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVU1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.290e-9
Identity = 29/80 (36.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    7 WIVYHSKMKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPHK-KEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLV 243
            +++YH K+++ ++Y +DST+ +PF++LL+G  ++ +      +  +++ V +D WL FRMT S+AV  K +R EL+ LL+
Sbjct: 1125 FLLYHKKVQSTKIYAYDSTFVSPFTILLFGGDIKIQWEHGSLEGDQSIAVTMDNWLSFRMTASSAVLVKYIRHELNQLLL 1204          
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: A0A7S3XX33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX33_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 2.150e-9
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    7 WIVYHSKMKTKQVYLHDSTYATPFSLLLWGARVR--HERPRKPHKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLV 243
            W++YHSK+++ +VYLHDST+ + FSLLL+G  V    ++     ++ A+ + +D W+ F+M +  AV  K  R E+  LL+
Sbjct:  248 WVLYHSKVQSSRVYLHDSTFISAFSLLLFGGDVTASQDKGTTGSRRNAL-LSVDEWVSFKMPKEAAVLCKVFRLEIDRLLL 327          
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: A0A7S2ID12_9EUKA (Hypothetical protein n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2ID12_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 4.910e-9
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    7 WIVYHSKMKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPHKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLL 240
            W+VYH K+ T ++Y+HD T  T   L L+GA      P+  H +    V++D W+  R++  TAV FKA+RR+L  L+
Sbjct:  156 WLVYHEKVATGKIYVHDVTAVTSLDLFLFGAE-----PQVLHAQH--RVIVDNWIEMRISPRTAVLFKALRRQLFVLM 226          
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: W7T633_9STRA (Putative atp-dependent rna helicase dhx36 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T633_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.150e-8
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   13 VYHSKMKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPHKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLL 240
            VYH KM+T + YLHD ++ +P S+LL+G+ +R  R       + V + +D WL F+  E T+V     ++ L   L
Sbjct: 1159 VYHRKMRTSRTYLHDISFVSPLSVLLFGSNIRTRREHGGIASKVVNITVDDWLSFKTKEETSVLVTVFKKHLDACL 1234          
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: A0A0M0JFJ6_9EUKA (ATP-dependent RNA helicase dhx29-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFJ6_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 2.910e-8
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    7 WIVYHSKMKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPHKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLL 240
            W+VYH K+ T +V++HD T  T   L L+GA      P+  H +   +V+ID W+  R++  TAV FKA+R++L  L+
Sbjct:  737 WLVYHEKVATGKVFVHDVTAVTSLDLFLFGAE-----PQVLHAQH--KVIIDGWIDLRISPRTAVLFKALRKQLFELM 807          
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: A7SF08_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SF08_NEMVE)

HSP 1 Score: 57.4 bits (137), Expect = 1.010e-7
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    7 WIVYHSKMKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPHKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVR 246
            W++YH K+K+ +V++HDST   PF LL +G  +      + H +    + +D +++FR  +  A   K +RREL  LL R
Sbjct:  670 WLIYHQKIKSSKVFIHDSTVIAPFPLLFFGGSISMH-VEQGHGQGHETIAVDNFIKFRSPKRIANLVKDLRRELDTLLER 748          
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: UPI001390545E (ATP-dependent DNA/RNA helicase DHX36 isoform X1 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=UPI001390545E)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-7
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    7 WIVYHSKMKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPHKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLLVR 246
            W++YH K+K+ +V++HDST   PF LL +G  +      + H +    + +D +++FR  +  A   K +RREL  LL R
Sbjct:  978 WLIYHQKIKSSKVFIHDSTVIAPFPLLFFGGSISMH-VEQGHGQGHETIAVDNFIKFRSPKRIANLVKDLRRELDTLLER 1056          
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Match: T1IZC6_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IZC6_STRMM)

HSP 1 Score: 55.8 bits (133), Expect = 3.550e-7
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    7 WIVYHSKMKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPHKKEAVEVVIDRWLRFRMTESTAVAFKAMRRELSNLL 240
            WIVYH +MK+  VY+HDS+  +P+ LLL+G ++R     + +      V ID W++F   E  A     +R EL  LL
Sbjct:  829 WIVYHQRMKSTCVYIHDSSMVSPYPLLLFGGKLRCGAIDRKYG-----VTIDGWIKFWCPEERADLIMRLRNELDKLL 901          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1448.3471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FS22_ECTSI4.200e-4191.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4K1_9STRA1.310e-1747.62P-loop containing nucleoside triphosphate hydrolas... [more]
W7TVU1_9STRA1.290e-936.25Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsi... [more]
A0A7S3XX33_HETAK2.150e-938.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2ID12_9EUKA4.910e-939.74Hypothetical protein n=2 Tax=Haptolina brevifila T... [more]
W7T633_9STRA1.150e-835.53Putative atp-dependent rna helicase dhx36 n=2 Tax=... [more]
A0A0M0JFJ6_9EUKA2.910e-839.74ATP-dependent RNA helicase dhx29-like protein n=1 ... [more]
A7SF08_NEMVE1.010e-735.00Predicted protein n=1 Tax=Nematostella vectensis T... [more]
UPI001390545E1.020e-735.00ATP-dependent DNA/RNA helicase DHX36 isoform X1 n=... [more]
T1IZC6_STRMM3.550e-738.46Uncharacterized protein n=1 Tax=Strigamia maritima... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1448contigH-canaliculatus_F_contig1448:25823..26460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue2.8e-29
Seed eggNOG ortholog2880.D7FS22
Preferred nameDHX29
KEGG koko:K18995
GOsGO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016282,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043021,GO:0043024,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0070035,GO:0070993,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0920@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1448.3471.1prot_H-canaliculatus_F_contig1448.3471.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1448 25823..26433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.3723361-CDS-H-canaliculatus_F_contig1448:25822..259081622929199.3723361-CDS-H-canaliculatus_F_contig1448:25822..25908Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1448 25823..25908 -
1696845714.8752377-CDS-H-canaliculatus_F_contig1448:25822..259081696845714.8752377-CDS-H-canaliculatus_F_contig1448:25822..25908Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1448 25823..25908 -
1622929199.3845534-CDS-H-canaliculatus_F_contig1448:26300..264331622929199.3845534-CDS-H-canaliculatus_F_contig1448:26300..26433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1448 26301..26433 -
1696845714.8883424-CDS-H-canaliculatus_F_contig1448:26300..264331696845714.8883424-CDS-H-canaliculatus_F_contig1448:26300..26433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1448 26301..26433 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.3949442-UTR-H-canaliculatus_F_contig1448:26433..264601622929199.3949442-UTR-H-canaliculatus_F_contig1448:26433..26460Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1448 26434..26460 -
1696845714.8967938-UTR-H-canaliculatus_F_contig1448:26433..264601696845714.8967938-UTR-H-canaliculatus_F_contig1448:26433..26460Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1448 26434..26460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1448.3471.1

>prot_H-canaliculatus_F_contig1448.3471.1 ID=prot_H-canaliculatus_F_contig1448.3471.1|Name=mRNA_H-canaliculatus_F_contig1448.3471.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=73bp
MKTKQVYLHDSTYATPFSLLLWGARVRHERPRKPHKKEAVEVVIDRWLRF
RMTESTAVAFKAMRRELSNLLVR
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mRNA from alignment at H-canaliculatus_F_contig1448:25823..26460-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1448.3471.1 ID=mRNA_H-canaliculatus_F_contig1448.3471.1|Name=mRNA_H-canaliculatus_F_contig1448.3471.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1448:25823..26460- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGTGGATAGTCTACCACAGCAAGATGAAGACGAAGCAGGTGTACCT CCATGACTCCACGTACGCCACGCCGTTCAGCCTCCTGCTCTGGGGCGCCC GGGTCCGCCACGAGCGCCCGCGCAAACCTCACAAGAAGGAGGCTGTCGAG GTCGTCATTGGTGAGGAAACACAAACAATATGTATCCAAAGCCCAAAACT CGCCTCTGTGTTTTGAGAGGGCTGTGGCCAACCGTGCGCTTCCAAGAGAG GAGGTGGAAGACGGCTTTGTAGACACTTTTTTAGTAGATATGGTTTGTGC GTGGCGGAACACCAATGCGCTGAGCATCATCCCCTCTCCACTCCCAATCA AACGCCGATTATGCACAGTAGATACCTGATTGTCATGGTGCTGAGGTACT GGAGGACACGTGATTCCGTGACTTTCATAGCTCGTCGATGCATCTGAGTC ACGCGTCCTGTTCTTCCTTTTTCTGACGCCCAACCTATCCCCGTTCCTGG CTTTACGTTGGGAACCGCTCGCTGAAATTATGCATCTGCAACCCCCGAAC AGATCGATGGTTGCGGTTCCGGATGACGGAGAGCACGGCTGTAGCGTTCA AGGCGATGCGGCGGGAACTTAGCAACCTTCTCGTGCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1448:25823..26460-

>mRNA_H-canaliculatus_F_contig1448.3471.1 ID=mRNA_H-canaliculatus_F_contig1448.3471.1|Name=mRNA_H-canaliculatus_F_contig1448.3471.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1448:25823..26460- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGACGAAGCAGGTGTACCTCCATGACTCCACGTACGCCACGCCGTT
CAGCCTCCTGCTCTGGGGCGCCCGGGTCCGCCACGAGCGCCCGCGCAAAC
CTCACAAGAAGGAGGCTGTCGAGGTCGTCATTGATGAAGACGAAGCAGGT
GTACCTCCATGACTCCACGTACGCCACGCCGTTCAGCCTCCTGCTCTGGG
GCGCCCGGGTCCGCCACGAGCGCCCGCGCAAACCTCACAAGAAGGAGGCT
GTCGAGGTCGTCATTGATCGATGGTTGCGGTTCCGGATGACGGAGAGCAC
GGCTGTAGCGTTCAAGGCGATGCGGCGGGAACTTAGCAACCTTCTCGTGC
GCATCGATGGTTGCGGTTCCGGATGACGGAGAGCACGGCTGTAGCGTTCA
AGGCGATGCGGCGGGAACTTAGCAACCTTCTCGTGCGC
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