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Homology
BLAST of mRNA_H-canaliculatus_F_contig14429.3454.1 vs. uniprot
Match: D7FYE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYE5_ECTSI) HSP 1 Score: 103 bits (257), Expect = 1.140e-20 Identity = 175/401 (43.64%), Postives = 188/401 (46.88%), Query Frame = 1
Query: 1 SRVGVRKTSSQELECRLCEQTFVEELLESVVGTTALEAGSMNGQPSAHAAGART----------------GGXXXXXEGGTPQGLQMPMIGVPFSMLQALGMGGLQPMNTRPTASTGAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRASEGARAAGPFLFGGRFAMGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSFSSRVRRFRQGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLDAESPFLGTLLQALGGAGGGHAEIFIGPNMQRVPAVGGGG 1155
SRVGVRKTS++ELECR CEQTFVEELLESVVG AL G ++ G GGTP G P+IG+PFSMLQALG+GG+ P+N RP A G XXXXXXXX EG RA GPFLFGGRFAMGSG XXXXXXXXXXXXXXXXXXXXXX +SFSSRV+RFRQ XXXXXXXXXXXXXXXXXXXXXXXXXXX LDAE+PFLGTLLQALGGAG HAEIFIGPNMQR+ GG
Sbjct: 19 SRVGVRKTSTEELECRRCEQTFVEELLESVVGNAAL--GGIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGRRGTRGGTP-GQGAPVIGMPFSMLQALGVGGMHPLNARPAAPGG-------------------DRGEGEGGEQXXXXXXXXXXXXEGGRA-GPFLFGGRFAMGSGGXXXXXXXXXXXXXXXXXXXXXXGG--------------SSFSSRVQRFRQAHAGPQTPRARQXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------LDAENPFLGTLLQALGGAGAEHAEIFIGPNMQRMSGAARGG 290
BLAST of mRNA_H-canaliculatus_F_contig14429.3454.1 vs. uniprot
Match: A0A6H5JIQ8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ8_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 3.040e-5 Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1
Query: 1 SRVGVRKTSSQELECRLCEQTFVEELLESVVGTTAL 108
+RV VRKTS+QELECR CEQTFVEELLE+VVG AL
Sbjct: 19 TRVRVRKTSTQELECRRCEQTFVEELLEAVVGNAAL 54
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1236 |
| Cds size | 1236 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14429.3454.1 >prot_H-canaliculatus_F_contig14429.3454.1 ID=prot_H-canaliculatus_F_contig14429.3454.1|Name=mRNA_H-canaliculatus_F_contig14429.3454.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=412bp
SRVGVRKTSSQELECRLCEQTFVEELLESVVGTTALEAGSMNGQPSAHAA
GARTGGGGGGGEGGTPQGLQMPMIGVPFSMLQALGMGGLQPMNTRPTAST
GAPAAAPAPAPAGGQGRDANGGRGGSGGGSGDGGSGSGRRASEGARAAGP
FLFGGRFAMGSGGSSSSSSSSSSSSGGGGSGTTVGDDGGGGGGGGGGGGG
GNSFSSRVRRFRQGSGGSTSNTGSNTSRTSAAGASGGDTSSASSSGSSGS
GSGRAGAAGSTAAGSSARAGLTRSGARRGSAAAAAAAAAAATAAPAAGRA
QGGRRQGQAAAAGVAATGGSGRAGSEGARGAGAAAAGGRGGGGGLDAESP
FLGTLLQALGGAGGGHAEIFIGPNMQRVPAVGGGGGGGDGGVGGGEGGGM
PDIGGGIAAMLG back to topmRNA from alignment at H-canaliculatus_F_contig14429:1..2469- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig14429.3454.1 ID=mRNA_H-canaliculatus_F_contig14429.3454.1|Name=mRNA_H-canaliculatus_F_contig14429.3454.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2469bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14429:1..2469- (Hapterophycus canaliculatus Oshoro5f female)
AGCCGAGTGGGCGTAAGGAAGACGTCGAGTCAGGAGCTGGAGTGCCGACT
GGTGAGAGGACAGGGGTGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGG
GTGGGGCGGGGTGGGTGGGTGTAGGTGTTCCAGCTGTTGGGTACGACTGG
ACGGGTCGAGGGGAAGGGATACGCGTGCGTGTATGCGTCGAACAGACACA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAAGAGAGAGAAAGAG
AGAGAGAGAAACGGATGGGCAGCCAGACAGGTAAGACAAAGGAAACAAGA
GCCCTGATTTCCCCCCGTCCTTTTTCGTCCCGTCGTCTTGCCCCGTCTCG
TTCCTCCCCGAAAGTCTCCTCCTCTAACCTCGGCCCGCCGGGCTTTTGAC
CGCCTGCCGTCACTCTCGCGATCGCTCCACTCCCCACCCCTCGGCACCTC
CACGCCGCGCTCCCGTGTTTCGTCCGTCAGTGCCGCCCGCTACTCCTTCC
ATCCCTGCGTGTGCTTACACACGCGTGCCCCCGCCCTCTTTCCTCACCCG
GCCTGCCATCGTTGTGTCTCTCAGTGCGAACAGACTTTCGTGGAAGAGCT
GCTGGAGAGCGTCGTGGGTACTACTGCCCTGGAGGCCGGGAGCATGAACG
GACAGCCTTCGGCGCACGCCGCGGGAGCTAGAACGGGAGGCGGCGGTGGC
GGAGGCGAAGGCGGCACGCCTCAGGGGCTCCAGATGCCGATGATCGGGGT
GCCGTTCAGCATGCTGCAGGCGTTGGGAATGGGAGGGCTTCAGCCGATGA
ACACGAGACCCACGGCGTCGACCGGAGCGCCCGCAGCGGCGCCGGCGCCG
GCGCCGGCAGGAGGTCAAGGTCGAGACGCAAATGGCGGCAGAGGCGGCAG
CGGTGGCGGCAGCGGCGACGGCGGCAGTGGCAGCGGTCGCCGGGCAAGTG
AAGGTGCCCGAGCCGCCGGGCCGTTCCTCTTCGGTGGTCGATTCGCCATG
GGCAGCGGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCGG
CGGCGGCGGTTCAGGCACCACGGTTGGTGACGATGGCGGCGGGGGCGGCG
GCGGCGGCGGGGGTGGTGGTGGTGGTAATAGTTTCAGCTCCCGCGTGCGT
CGGTTTCGCCAGGGCTCCGGTGGTAGCACCAGCAATACCGGCAGCAACAC
TTCCCGGACGTCGGCAGCAGGAGCTAGCGGGGGTGACACCAGCAGCGCCA
GCAGCAGCGGCAGCAGCGGCAGCGGCAGCGGTCGGGCTGGCGCTGCTGGG
AGCACTGCAGCAGGGAGCAGTGCTCGGGCTGGCTTGACGCGGAGCGGGGC
TCGAAGAGGCTCAGCAGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCACTG
CTGCTCCTGCTGCTGGGCGGGCGCAGGGTGTCGAGGCGACCGCGAATCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCTCAGAACGCGAACCA
CGCTCAGATCGCGAACAGCGTAGAGCAGCTCCTGGAGCAGCTGCTCGGCG
GAGGCATGATGCAGGGGGGCATGGTGCAGATCGGCGGCGGCCCGCCGCAA
ATGGGTGAAGGAAGAAACACCGGTGGTGGCGGTGGCGGCGGCGGTGGGCT
GCAGGGCCGTCGGCAAGGGCAAGCGGCGGCCGCGGGAGTTGCGGCCACCG
GCGGAAGCGGAAGGGCAGGGAGCGAAGGTGCTAGGGGGGCTGGTGCAGCT
GCTGCTGGCGGCCGCGGCGGAGGTGGCGGTCTGGATGCGGAAAGTCCTTT
CCTGGGGTATGATGGGGGGACTTGTTTTTGTGTGTCGGCACGCTCGACTT
GGTCGCTAATTTGCAGGGCGACTTGTCCTTTGTCCAACCTTGAACGGCTG
TTGGGTGTCGCACGCCCAGCGACCATCCTCCTTGAAAGCCCTTACGCGGA
CCACGACGTCTGGTTTGCACACATGCCGCGCCGTGTCTTGAATGCCGACC
CGTCTAAAGAACTTCAAAACCGACGAGCCAACAATCCTTCCGAGTCAAGG
CGCTCGAAGGGGGCCACGTGTATCAACCCCCGCCCCCCCCCCGCCCCCCC
TCCCGCTTATTCCCACACCAGTCGCTCCCAAACGCGCACCACACCGCCTC
CGGGCCAAGGCGCACTGCGTGACCCAATGCATCCGGCACATCGTCCACGG
TTTATTGCAGGACCCTCCTGCAAGCGCTTGGAGGAGCGGGGGGTGGCCAC
GCCGAGATCTTCATCGGTCCCAACATGCAGCGGGTGCCAGCAGTCGGTGG
GGGTGGCGAGGCTCGTGGCAGCGGCAGCACCCGCGCCGGCGACGCGGGCG
CGGCTGCCGCGGGGGCGGCGGGCGCGGGCGGAGGAGGAGGAGGAGGCGAC
GGTGGCGTCGGGGGTGGTGAGGGAGGCGGGATGCCCGACATCGGCGGAGG
CATCGCGGCTATGCTTGGC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig14429:1..2469- >mRNA_H-canaliculatus_F_contig14429.3454.1 ID=mRNA_H-canaliculatus_F_contig14429.3454.1|Name=mRNA_H-canaliculatus_F_contig14429.3454.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2472bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14429:1..2469- (Hapterophycus canaliculatus Oshoro5f female)
AGCCGAGTGGGCGTAAGGAAGACGTCGAGTCAGGAGCTGGAGTGCCGACT
GAGCCGAGTGGGCGTAAGGAAGACGTCGAGTCAGGAGCTGGAGTGCCGAC
TGTGCGAACAGACTTTCGTGGAAGAGCTGCTGGAGAGCGTCGTGGGTACT
ACTGCCCTGGAGGCCGGGAGCATGAACGGACAGCCTTCGGCGCACGCCGC
GGGAGCTAGAACGGGAGGCGGCGGTGGCGGAGGCGAAGGCGGCACGCCTC
AGGGGCTCCAGATGCCGATGATCGGGGTGCCGTTCAGCATGCTGCAGGCG
TTGGGAATGGGAGGGCTTCAGCCGATGAACACGAGACCCACGGCGTCGAC
CGGAGCGCCCGCAGCGGCGCCGGCGCCGGCGCCGGCAGGAGGTCAAGGTC
GAGACGCAAATGGCGGCAGAGGCGGCAGCGGTGGCGGCAGCGGCGACGGC
GGCAGTGGCAGCGGTCGCCGGGCAAGTGAAGGTGCCCGAGCCGCCGGGCC
GTTCCTCTTCGGTGGTCGATTCGCCATGGGCAGCGGTGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGTAGCGGCGGCGGCGGTTCAGGCACCACG
GTTGGTGACGATGGCGGCGGGGGCGGCGGCGGCGGCGGGGGTGGTGGTGG
TGGTAATAGTTTCAGCTCCCGCGTGCGTCGGTTTCGCCAGGGCTCCGGTG
GTAGCACCAGCAATACCGGCAGCAACACTTCCCGGACGTCGGCAGCAGGA
GCTAGCGGGGGTGACACCAGCAGCGCCAGCAGCAGCGGCAGCAGCGGCAG
CGGCAGCGGTCGGGCTGGCGCTGCTGGGAGCACTGCAGCAGGGAGCAGTG
CTCGGGCTGGCTTGACGCGGAGCGGGGCTCGAAGAGGCTCAGCAGCTGCC
GCCGCCGCCGCCGCCGCCGCCGCCACTGCTGCTCCTGCTGCTGGGCGGGC
GCAGGGTTGCGAACAGACTTTCGTGGAAGAGCTGCTGGAGAGCGTCGTGG
GTACTACTGCCCTGGAGGCCGGGAGCATGAACGGACAGCCTTCGGCGCAC
GCCGCGGGAGCTAGAACGGGAGGCGGCGGTGGCGGAGGCGAAGGCGGCAC
GCCTCAGGGGCTCCAGATGCCGATGATCGGGGTGCCGTTCAGCATGCTGC
AGGCGTTGGGAATGGGAGGGCTTCAGCCGATGAACACGAGACCCACGGCG
TCGACCGGAGCGCCCGCAGCGGCGCCGGCGCCGGCGCCGGCAGGAGGTCA
AGGTCGAGACGCAAATGGCGGCAGAGGCGGCAGCGGTGGCGGCAGCGGCG
ACGGCGGCAGTGGCAGCGGTCGCCGGGCAAGTGAAGGTGCCCGAGCCGCC
GGGCCGTTCCTCTTCGGTGGTCGATTCGCCATGGGCAGCGGTGGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCGGCGGCGGCGGTTCAGGCA
CCACGGTTGGTGACGATGGCGGCGGGGGCGGCGGCGGCGGCGGGGGTGGT
GGTGGTGGTAATAGTTTCAGCTCCCGCGTGCGTCGGTTTCGCCAGGGCTC
CGGTGGTAGCACCAGCAATACCGGCAGCAACACTTCCCGGACGTCGGCAG
CAGGAGCTAGCGGGGGTGACACCAGCAGCGCCAGCAGCAGCGGCAGCAGC
GGCAGCGGCAGCGGTCGGGCTGGCGCTGCTGGGAGCACTGCAGCAGGGAG
CAGTGCTCGGGCTGGCTTGACGCGGAGCGGGGCTCGAAGAGGCTCAGCAG
CTGCCGCCGCCGCCGCCGCCGCCGCCGCCACTGCTGCTCCTGCTGCTGGG
CGGGCGCAGGGTGGCCGTCGGCAAGGGCAAGCGGCGGCCGCGGGAGTTGC
GGCCACCGGCGGAAGCGGAAGGGCAGGGAGCGAAGGTGCTAGGGGGGCTG
GTGCAGCTGCTGCTGGCGGCCGCGGCGGAGGTGGCGGTCTGGATGCGGAA
AGTCCTTTCCTGGGGGCCGTCGGCAAGGGCAAGCGGCGGCCGCGGGAGTT
GCGGCCACCGGCGGAAGCGGAAGGGCAGGGAGCGAAGGTGCTAGGGGGGC
TGGTGCAGCTGCTGCTGGCGGCCGCGGCGGAGGTGGCGGTCTGGATGCGG
AAAGTCCTTTCCTGGGGACCCTCCTGCAAGCGCTTGGAGGAGCGGGGGGT
GGCCACGCCGAGATCTTCATCGGTCCCAACATGCAGCGGGTGCCAGCAGT
CGGTGGGGGACCCTCCTGCAAGCGCTTGGAGGAGCGGGGGGTGGCCACGC
CGAGATCTTCATCGGTCCCAACATGCAGCGGGTGCCAGCAGTCGGTGGGG
GAGGAGGAGGAGGCGACGGTGGCGTCGGGGGTGGTGAGGGAGGCGGGATG
CCCGACATCGGCGGAGGCATCGCGGCTATGCTTGGCGAGGAGGAGGAGGC
GACGGTGGCGTCGGGGGTGGTGAGGGAGGCGGGATGCCCGACATCGGCGG
AGGCATCGCGGCTATGCTTGGC back to top
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