mRNA_H-canaliculatus_F_contig14422.3452.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14422.3452.1
Unique NamemRNA_H-canaliculatus_F_contig14422.3452.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14422.3452.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 2.200e-37
Identity = 91/131 (69.47%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:   46 APLVVEVKVPVRVPLAGEELKAFRDEENRKRRLELEXXXXXXXXXAMEKEQLIADSDEGSDKDDGEADHAPKRRRAIVASLFSKYSKPQHLMFGYYDPQIPTDEYGVKETEPIGWLAAAMQQQNSEMPAAI 438
            A +VV V VPVRVPLAGEELKAFRDEENR       XXXXXXXXX                          KRRRAIVASLFSKYSKPQHLMFGYYDP +PTDEYGVKETEPIGWLAAAMQQQNSEMPAA+
Sbjct:  570 ASMVVPVTVPVRVPLAGEELKAFRDEENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRAIVASLFSKYSKPQHLMFGYYDPHVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAM 700
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BLAST of mRNA_H-canaliculatus_F_contig14422.3452.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.960e-20
Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = 1 
Query:   64 VKVPVRVPLAGEELKAFRDEENRKRRLELEXXXXXXXXXAMEKEQLIADSDEGSDKDDGEAD--HAPKRRRAIVASLFSKYSKPQHLMFGYYDPQIPTDEYGVKETEPIGWLAAAMQQQN 417
            V+VP RVPL GEEL A+ +E          XXXXXXX   ME+ Q +ADS          A   H  KRRR + ASLFSK+SKPQHLMFG++D  +  D+YGV+E EPI WLA +MQ++N
Sbjct:  448 VEVPERVPLVGEELTAYLEEXXXXXXXXXXXXXXXXXAEEMERGQGLADSXXXXXXXXXXAAVAHVNKRRRLVNASLFSKFSKPQHLMFGFHDAMVEVDDYGVREAEPIAWLAVSMQERN 567
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14422.3452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQA4_ECTSI2.200e-3769.47Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA1.960e-2051.67Cleavage and polyadenylation specificity factor su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14422contigH-canaliculatus_F_contig14422:108..2294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue3.8e-33
Seed eggNOG ortholog2880.D7FQA4
Preferred nameCPSF2
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG1236@1,KOG1135@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03019
Hectar predicted targeting categoryother localisation
Exons4
Model size449
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14422.3452.1prot_H-canaliculatus_F_contig14422.3452.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14422 108..2293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929196.432815-CDS-H-canaliculatus_F_contig14422:107..1761622929196.432815-CDS-H-canaliculatus_F_contig14422:107..176Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14422 108..176 +
1696845713.3689632-CDS-H-canaliculatus_F_contig14422:107..1761696845713.3689632-CDS-H-canaliculatus_F_contig14422:107..176Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14422 108..176 +
1622929196.4498265-CDS-H-canaliculatus_F_contig14422:597..7261622929196.4498265-CDS-H-canaliculatus_F_contig14422:597..726Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14422 598..726 +
1696845713.3807168-CDS-H-canaliculatus_F_contig14422:597..7261696845713.3807168-CDS-H-canaliculatus_F_contig14422:597..726Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14422 598..726 +
1622929196.4641562-CDS-H-canaliculatus_F_contig14422:1779..19071622929196.4641562-CDS-H-canaliculatus_F_contig14422:1779..1907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14422 1780..1907 +
1696845713.3937342-CDS-H-canaliculatus_F_contig14422:1779..19071696845713.3937342-CDS-H-canaliculatus_F_contig14422:1779..1907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14422 1780..1907 +
1622929196.4757023-CDS-H-canaliculatus_F_contig14422:2172..22931622929196.4757023-CDS-H-canaliculatus_F_contig14422:2172..2293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14422 2173..2293 +
1696845713.409176-CDS-H-canaliculatus_F_contig14422:2172..22931696845713.409176-CDS-H-canaliculatus_F_contig14422:2172..2293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14422 2173..2293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14422.3452.1

>prot_H-canaliculatus_F_contig14422.3452.1 ID=prot_H-canaliculatus_F_contig14422.3452.1|Name=mRNA_H-canaliculatus_F_contig14422.3452.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=149bp
GDDDGEDDRDEEDEEAPLVVEVKVPVRVPLAGEELKAFRDEENRKRRLEL
EEEEQRRHAAAMEKEQLIADSDEGSDKDDGEADHAPKRRRAIVASLFSKY
SKPQHLMFGYYDPQIPTDEYGVKETEPIGWLAAAMQQQNSEMPAAIQEA
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mRNA from alignment at H-canaliculatus_F_contig14422:108..2294+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14422.3452.1 ID=mRNA_H-canaliculatus_F_contig14422.3452.1|Name=mRNA_H-canaliculatus_F_contig14422.3452.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2187bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14422:108..2294+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGATGACGACGGGGAAGATGATAGGGACGAGGAGGACGAAGAGGCGCC
TCTCGTGGTGGAGGTCAAGGTGAGTCGAGGCAGGCGTATGAAGTGAGGTG
GACTTGAAGGATCTTCTTCTTTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGTTGTCAAATTTTGTCTCAAGCGCGCTGATGATTTGAAGGAAAAC
GAGAATGTTTCTTCGAGTTGGACAAACGCGCGAAAAGGAACCAGAAATTG
TCGCAAAATTGAATATTCTAGCACGTCTTTCACGTTTCCCCCCCGCGTCT
ACCCACAAAGGCACGATCTCTCGCAAACGGAGACGAACTTCGCTCCTGTT
CCATACGTTCGATTGCTCCCGCTTGCACCATTTGAGTGGCAATACAGGCA
CGTCAGGTCCGTGGACACGAAACAAGAGTTCAGACAAACATACAGACACA
CAGCGCCCCCGCCCCGCCCCCCTCCCTGTGAACGGAACAGGTGCCAGTTC
GTGTGCCGCTTGCCGGGGAAGAGCTCAAGGCCTTCCGAGACGAGGAGAAC
AGAAAACGGAGGCTGGAACTGGAGGAAGAGGAGCAGCGGCGGCACGCCGC
GGCCATGGAGAAAGAACAGGTACGCCGCCGCAAACCATAACAGCGCAGCG
CGGCGTTTGGGTGTACGTGGGTGCCGCGGCCGTGCCTCATCGAAAGGTCG
ACCAGCAAGAAGCGGAGGCGGCGGCGACGGCGGCAGCAGCAGCAGCAGCT
TACTAGTCGTGCAGTGAGAATGCGCCACCCAGCCCTCACGCCGCTGGCTT
GTAGTCTCTCTTTTGGCCTTTCGGACACGCACGGCACCCGTCTTTGTGCC
GATGCGACGGCCAAAGCTGAGCGACGTCCGCCCACCCGCCCGCCCGCCCG
CCCCGTCGAGATGACAAGAGTCCGGAATGGGCCCCGCGTGCAGAGCTCGT
TGCGATAGGATAGGATAGGATAGGATAGGATAGGCAGGATCCATGCCGAC
GGTGGGAGGATGAAGAAGTAGCGAAAAGGAAGGGGGTGCGGTGTCCATCG
ACGGGCGTGCGTGTTTCCGAGATTGAACCGAGGACTTTCGGCGTGGTGCA
CGAGTTGAGCCTATCGGCGACTCTCCGTCTCTCTTCGATGGTTGGTTCAG
GTCTCAGCACGCTGGTCTCATTCTTCGCGTGGAGGTCTAGAGTGTTGACG
GCGCCTTCAGGTCGAACGGGCGGTTTCGAGTTGAAACGACGTTGTTGCAC
ATGAGTAGATTGAAAGATGGGGTGGTTGGGCCGGGGCGCCGCGTCCAATT
ACATGGACGGAATGCGTGTTCGACTTCTGCGACAAGTAGCATAAACCGCG
CTGTGAAAGGCTGCGCAATGCCAGTGCGATTCTCTCCGCAAAGTAAAAAT
CCCACAAGGTTCTCTAGGTAGCCTGTTCATGCATGTATGTGTGCGTGTGT
TTGTGTGTTCATCGTGAGCATCGACCGCGGTAGACGGCTGGCCGATTAGA
ATGCCAGGCGCTGCCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGT
GTCTGTGTTTTTGTTGTCGTGTCCTCTCCCTGGTACGATCTAGTGCGATA
CGTTTATCATTCGACCTCATTCGGGTCTGTCCGTCTTTCCGTCTGTCCCC
TTTCGTTTTCTTTGCGGGCCAGTTGATCGCCGACTCCGACGAAGGCTCCG
ACAAAGACGACGGCGAGGCGGACCACGCGCCGAAGCGCAGGAGAGCGATC
GTGGCTAGCCTCTTCAGCAAGTACTCCAAGCCACAGCACCTCATGTTCGG
GTAAGGGCGTCTATTCGCTCCTTCTCTTATCTCAAAATAGGGCACAAGGA
AGGAAGCGTTGCACGTAGACTGGAGCACAGTGCGGACAAAGGGAGGTACC
GCTGTGGGCAGAGACGGATCAACAACTTTTTCACGTGAAGACAACGACAA
CATTAACAACACACAGCGCACGATACGCATCACCTACGTAACCATTGCGA
CCAACATCGCCAATATCGCCAACACTAGCAAACATCACAAGCCACTCCCA
CCCGCGTCTTTCCAGGTACTACGACCCTCAGATACCGACGGACGAGTACG
GCGTGAAGGAGACAGAGCCGATCGGATGGCTGGCGGCGGCAATGCAGCAG
CAAAACTCGGAGATGCCAGCGGCCATACAGGAAGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14422:108..2294+

>mRNA_H-canaliculatus_F_contig14422.3452.1 ID=mRNA_H-canaliculatus_F_contig14422.3452.1|Name=mRNA_H-canaliculatus_F_contig14422.3452.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=894bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14422:108..2294+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGATGACGACGGGGAAGATGATAGGGACGAGGAGGACGAAGAGGCGCC
TCTCGTGGTGGAGGTCAAGGGTGATGACGACGGGGAAGATGATAGGGACG
AGGAGGACGAAGAGGCGCCTCTCGTGGTGGAGGTCAAGGTGCCAGTTCGT
GTGCCGCTTGCCGGGGAAGAGCTCAAGGCCTTCCGAGACGAGGAGAACAG
AAAACGGAGGCTGGAACTGGAGGAAGAGGAGCAGCGGCGGCACGCCGCGG
CCATGGAGAAAGAACAGGTGCCAGTTCGTGTGCCGCTTGCCGGGGAAGAG
CTCAAGGCCTTCCGAGACGAGGAGAACAGAAAACGGAGGCTGGAACTGGA
GGAAGAGGAGCAGCGGCGGCACGCCGCGGCCATGGAGAAAGAACAGTTGA
TCGCCGACTCCGACGAAGGCTCCGACAAAGACGACGGCGAGGCGGACCAC
GCGCCGAAGCGCAGGAGAGCGATCGTGGCTAGCCTCTTCAGCAAGTACTC
CAAGCCACAGCACCTCATGTTCGGTTGATCGCCGACTCCGACGAAGGCTC
CGACAAAGACGACGGCGAGGCGGACCACGCGCCGAAGCGCAGGAGAGCGA
TCGTGGCTAGCCTCTTCAGCAAGTACTCCAAGCCACAGCACCTCATGTTC
GGGTACTACGACCCTCAGATACCGACGGACGAGTACGGCGTGAAGGAGAC
AGAGCCGATCGGATGGCTGGCGGCGGCAATGCAGCAGCAAAACTCGGAGA
TGCCAGCGGCCATACAGGAAGCGGTACTACGACCCTCAGATACCGACGGA
CGAGTACGGCGTGAAGGAGACAGAGCCGATCGGATGGCTGGCGGCGGCAA
TGCAGCAGCAAAACTCGGAGATGCCAGCGGCCATACAGGAAGCG
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