prot_H-canaliculatus_F_contig14422.3452.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig14422.3452.1
Unique Nameprot_H-canaliculatus_F_contig14422.3452.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length149
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14422.3452.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 2.200e-37
Identity = 91/131 (69.47%), Postives = 94/131 (71.76%), Query Frame = 0 
Query:   16 APLVVEVKVPVRVPLAGEELKAFRDEENRKRRLELEXXXXXXXXXAMEKEQLIADSDEGSDKDDGEADHAPKRRRAIVASLFSKYSKPQHLMFGYYDPQIPTDEYGVKETEPIGWLAAAMQQQNSEMPAAI 146
            A +VV V VPVRVPLAGEELKAFRDEENR       XXXXXXXXX                          KRRRAIVASLFSKYSKPQHLMFGYYDP +PTDEYGVKETEPIGWLAAAMQQQNSEMPAA+
Sbjct:  570 ASMVVPVTVPVRVPLAGEELKAFRDEENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRAIVASLFSKYSKPQHLMFGYYDPHVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAM 700
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BLAST of mRNA_H-canaliculatus_F_contig14422.3452.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.960e-20
Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = 0 
Query:   22 VKVPVRVPLAGEELKAFRDEENRKRRLELEXXXXXXXXXAMEKEQLIADSDEGSDKDDGEAD--HAPKRRRAIVASLFSKYSKPQHLMFGYYDPQIPTDEYGVKETEPIGWLAAAMQQQN 139
            V+VP RVPL GEEL A+ +E          XXXXXXX   ME+ Q +ADS          A   H  KRRR + ASLFSK+SKPQHLMFG++D  +  D+YGV+E EPI WLA +MQ++N
Sbjct:  448 VEVPERVPLVGEELTAYLEEXXXXXXXXXXXXXXXXXAEEMERGQGLADSXXXXXXXXXXAAVAHVNKRRRLVNASLFSKFSKPQHLMFGFHDAMVEVDDYGVREAEPIAWLAVSMQERN 567
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14422.3452.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQA4_ECTSI2.200e-3769.47Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA1.960e-2051.67Cleavage and polyadenylation specificity factor su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 38..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14422contigH-canaliculatus_F_contig14422:108..2293 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14422.3452.1mRNA_H-canaliculatus_F_contig14422.3452.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig14422 108..2294 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig14422.3452.1 ID=prot_H-canaliculatus_F_contig14422.3452.1|Name=mRNA_H-canaliculatus_F_contig14422.3452.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=149bp
GDDDGEDDRDEEDEEAPLVVEVKVPVRVPLAGEELKAFRDEENRKRRLEL
EEEEQRRHAAAMEKEQLIADSDEGSDKDDGEADHAPKRRRAIVASLFSKY
SKPQHLMFGYYDPQIPTDEYGVKETEPIGWLAAAMQQQNSEMPAAIQEA
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