mRNA_H-canaliculatus_F_contig1417.3287.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1417.3287.1
Unique NamemRNA_H-canaliculatus_F_contig1417.3287.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1417.3287.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 5.810e-85
Identity = 236/341 (69.21%), Postives = 257/341 (75.37%), Query Frame = 1 
Query:  355 VVEALKRSSTVDTLTFHNAGLTETSFAILVEGLEHTSVQCLGLDYNTPPSPTPLPASSLLKRTGTGNKPEGAV-----LSPLSSPKRNFAGLVREGSKLKALSLRGNGIDDIEAVALAEAIEDNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLAPELEKRATAEEAIAAQNKIAQDAMKKKKDAKVETRLPLSAVIVQNGADGISRAIAGGSRSLAALNLADNRELGAGGALLTLLSRIAEARKEEAEEAG------AKAGAVVLQELNFARCQGYDEREDGEGEDQALGEEAGAIAAVVFALKPTKVVV 1344
            ++EALKRSS VDT+ FHNAGLT  S  +LVEGL HT+V+C  LDYNT   P  L +SS   R       E A+         SS  RNFAGLV EGSKLKALSLRGN + D EA+ALAEAIE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVL  E EKRA A+  IAAQNK+A DAMKKKKDAKVETRLPLSAV V+ G DG SRA+AGGSRSLAALNLADNR+LG GGAL  LLSRI  ARKEEA EAG      A  G+VVLQEL+  RCQGY E        +A GE+  AIAA+ FAL+PTKVVV
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNT--LPVVLSSSSPPTRPPPSGPTEPALEEAPATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAE--------EAGGEDDTAIAAMSFALRPTKVVV 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1417.3287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT35_ECTSI5.810e-8569.21Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1417contigH-canaliculatus_F_contig1417:10479..13482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.9
Seed ortholog evalue1.2e-73
Seed eggNOG ortholog2880.D7FT35
KEGG koko:K09257
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons3
Model size2009
Cds size1230
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1417.3287.1prot_H-canaliculatus_F_contig1417.3287.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1417 10596..12820 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.5068462-UTR-H-canaliculatus_F_contig1417:10478..105951622929166.5068462-UTR-H-canaliculatus_F_contig1417:10478..10595Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 10479..10595 +
1696845702.6434598-UTR-H-canaliculatus_F_contig1417:10478..105951696845702.6434598-UTR-H-canaliculatus_F_contig1417:10478..10595Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 10479..10595 +
1622929166.5622616-UTR-H-canaliculatus_F_contig1417:12820..134821622929166.5622616-UTR-H-canaliculatus_F_contig1417:12820..13482Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 12821..13482 +
1696845702.690016-UTR-H-canaliculatus_F_contig1417:12820..134821696845702.690016-UTR-H-canaliculatus_F_contig1417:12820..13482Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 12821..13482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.5239863-CDS-H-canaliculatus_F_contig1417:10595..111031622929166.5239863-CDS-H-canaliculatus_F_contig1417:10595..11103Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1417 10596..11103 +
1696845702.655104-CDS-H-canaliculatus_F_contig1417:10595..111031696845702.655104-CDS-H-canaliculatus_F_contig1417:10595..11103Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1417 10596..11103 +
1622929166.5352066-CDS-H-canaliculatus_F_contig1417:11459..115951622929166.5352066-CDS-H-canaliculatus_F_contig1417:11459..11595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1417 11460..11595 +
1696845702.666137-CDS-H-canaliculatus_F_contig1417:11459..115951696845702.666137-CDS-H-canaliculatus_F_contig1417:11459..11595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1417 11460..11595 +
1622929166.5479195-CDS-H-canaliculatus_F_contig1417:12234..128201622929166.5479195-CDS-H-canaliculatus_F_contig1417:12234..12820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1417 12235..12820 +
1696845702.6797838-CDS-H-canaliculatus_F_contig1417:12234..128201696845702.6797838-CDS-H-canaliculatus_F_contig1417:12234..12820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1417 12235..12820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1417.3287.1

>prot_H-canaliculatus_F_contig1417.3287.1 ID=prot_H-canaliculatus_F_contig1417.3287.1|Name=mRNA_H-canaliculatus_F_contig1417.3287.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=410bp
MLSAFRHPSRIFPPNFRRQPRIFEVPVHPCLSARQQPNEATTEDAVNNVQ
SVTPSAATAAKLSTVQLRNFAVDLTTLRLVVEALKRSSTVDTLTFHNAGL
TETSFAILVEGLEHTSVQCLGLDYNTPPSPTPLPASSLLKRTGTGNKPEG
AVLSPLSSPKRNFAGLVREGSKLKALSLRGNGIDDIEAVALAEAIEDNTM
LGSLNLFDNKITDVGAAAFAATLRINTVMRGLSLSRNSLTSASAQAFGLL
LAGGYEVLAPELEKRATAEEAIAAQNKIAQDAMKKKKDAKVETRLPLSAV
IVQNGADGISRAIAGGSRSLAALNLADNRELGAGGALLTLLSRIAEARKE
EAEEAGAKAGAVVLQELNFARCQGYDEREDGEGEDQALGEEAGAIAAVVF
ALKPTKVVV*
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mRNA from alignment at H-canaliculatus_F_contig1417:10479..13482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1417.3287.1 ID=mRNA_H-canaliculatus_F_contig1417.3287.1|Name=mRNA_H-canaliculatus_F_contig1417.3287.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3004bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1417:10479..13482+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGAATCATCCTCGATGGACGTTTGGGGAGACTCTTGCCTTTCTAAAG
GTGGTCTCCACACGAGGGTATTTTTTTAACAGTGGTAACTACCGCTACAG
CTTGGTATGAAGGCACCATGCTGTCTGCCTTTCGACACCCTTCGCGTATT
TTTCCTCCGAATTTCCGACGCCAACCAAGAATTTTCGAGGTTCCCGTTCA
TCCATGCCTCTCGGCACGTCAACAGCCGAACGAGGCGACCACCGAAGACG
CCGTCAACAACGTCCAAAGTGTCACCCCGTCGGCTGCAACAGCTGCGAAA
TTATCTACCGTCCAGCTGCGAAACTTTGCCGTGGATCTGACGACTCTGCG
CCTGGTGGTGGAGGCGCTCAAGAGGTCATCGACGGTGGACACTCTTACGT
TCCACAATGCTGGGCTGACGGAAACGTCCTTCGCTATCTTGGTGGAAGGT
CTTGAGCACACCAGCGTCCAGTGTCTCGGTCTGGACTACAACACACCGCC
GTCGCCGACACCATTGCCGGCGTCGTCGCTCTTAAAGAGAACGGGAACGG
GGAACAAGCCGGAGGGTGCAGTCCTCTCCCCGCTTTCTTCTCCAAAACGA
AATTTTGCCGGCCTCGTCCGCGAAGGTACACCTGCGTTCAGCAAAACTCT
GAGTTTGTCTGAAGTAGATCGGCTTCCCAATGAGTAGTGTGGATGTGAAA
TTACGAGTGCTCGCGCGGACACACCTGCGTGCTGAGAGTCGCAACATGGA
TGTGTCAAGAACTCGTCCACATTGAGTCAAGATTTAGTGCGCGAGGATAG
CTTCATGTGTTTCTTTCTAAGTTATGTTTGCTGGTGCTCATGGCGACGTT
GAAGTGCATAATGAGTAGCGCCGTCGAAGTCAACCAAATTTTAGCGTTTC
GCTTCCGGTACCGGCCCATGCGGTTTTCAGCGCTACTGGCTCCTCGCTTG
CGCATGCTGTGGTGCTTTGTTGTACTCGAAGGCTCAAAGCTTAAGGCGTT
GTCCCTCAGAGGGAATGGGATTGACGACATCGAGGCGGTTGCTCTCGCTG
AAGCCATCGAAGATAACACCATGCTGGGCTCGCTGAATCTTTTTGACAAC
AAGATCACAGACGTCGGGTAAGCAAGCCAGCGTTTGAGATTGATCGAGCT
GTGTTTGAGCAAGACGAGTGTTTCCAAATACCTTAGTGGGGCAAAGTAAG
CTTGAGGTCGATTGTTGCAAGGTAGGTTCGAGTGGTAGCTTAAGAACACC
TCTTGAAAAACAACGCGTCGCGTCGACCCTGACTTAATCCGTTGTCCCGA
CTTGTTCACTGGTGATGTCGGCTGCACACTTTACCAGTGTGCGACGGTTG
TTACGCTCACTACAGCATTTTAATGCGAATGTGCCAGGTGCCGGTATCGT
TCGCATGGATCAATCAATCTGCGACATTGAAGAGTGATATGATCAAGTGA
TCGTGCTACCGTGCAAACACCTTCCACACCATAGCTGTCGAACTAGGTGA
TGGGGATTTCTTACGATCCTGTCCCTACTCTCTCCGGGCTTCGCCGGCTT
CCCATATTAACACCACTCTTGCATCATGAGATTGCAGGGCAAATAATTCC
CCGACCCGTGTACTCCATACACAGGCAAGGGGGGTGCGTGTTGGTTGTCT
GCTGTAACACCCCACGTTTCCTGTTACGTCTCATATTGTTCTGGCCAACG
CGCTCGTGTCACTTGTCGCGTGTATATGTCCACTGAACACACCAACCAAA
CTACAGCGCCGCTGCGTTTGCAGCAACTCTGAGGATCAACACCGTCATGC
GCGGCCTATCTTTGTCTAGAAACTCGTTGACCTCCGCTTCAGCCCAGGCC
TTCGGGCTTCTCCTGGCGGGTGGTTACGAGGTCCTAGCCCCCGAGCTCGA
AAAGCGGGCTACCGCCGAGGAGGCAATAGCGGCACAGAACAAAATCGCCC
AAGACGCCATGAAAAAGAAAAAGGACGCTAAGGTGGAAACCCGTCTCCCG
CTAAGCGCGGTTATCGTCCAGAACGGGGCAGACGGAATCAGCAGGGCCAT
CGCCGGAGGAAGCCGGAGTTTAGCGGCACTAAATCTGGCAGACAATCGGG
AGCTCGGCGCGGGCGGGGCACTTTTGACTCTCCTTTCGAGGATAGCGGAA
GCGAGGAAAGAAGAGGCGGAGGAGGCGGGTGCGAAGGCCGGGGCGGTCGT
GCTGCAGGAGTTGAACTTTGCGCGTTGTCAAGGGTATGACGAGCGGGAGG
ACGGGGAGGGGGAGGACCAAGCCCTCGGGGAGGAGGCGGGGGCGATCGCT
GCTGTGGTGTTCGCGCTGAAGCCGACCAAAGTCGTGGTGTGAAAGGTCAT
CGGTTTTTCGCCGTCTCTCGGCACGGCGGTGGATGGTTTGTTTTAAGTTT
CTGAGGAGATTCCAGCGCACCTGCGATCTTCGCCTCACAGCAGGTGCTAT
CGTCTCGAGCCCCTGCGCGTGCCTGCAGTCGCACCCACCCATCGGAATCG
TTTGAGTGGTGAGCGACCTATTGCCGACACCAACTCGCGAAGCAGGGACT
TGAGCGGGACTTCCCCCGAGGGCGACATGAACGGGGTGTGCTTGGAGCTT
CGGTTCTCGCTCCAACGCTTGCCGTGAATTGAGGGGGGGCTCATCTGTTC
AAAAAGTGTTGGGCGCCTCTCCTGCCTGTCCGGAATTTCGCTCGTCTGAA
GAAGCCGCCACGTTATCTTCCCTGATGTTATTCCTAGAGCACGAAACGTG
TGTGTTTGCTTCTCAGGGTGAACCTTGCAAACGCTTCCGAGAACCCTTTC
GCAAGAGGAATACCGATGTGGCTCTGTCTGTTAGGAGCGACTTTGTTGCT
TTTAGGTGGTGCGAGGTCACACGCCCACAGTTTCGTACGTAAAATCTAGT
CGTTTTCACCCTCGTGACAGAAACATTTCGTTCAACGTTCAACGGAGGTC
CTGGCGTAAGCGACACACGTGTTGCCTGTACGACCGTCGTGAGGTCTGGC
GCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1417:10479..13482+

>mRNA_H-canaliculatus_F_contig1417.3287.1 ID=mRNA_H-canaliculatus_F_contig1417.3287.1|Name=mRNA_H-canaliculatus_F_contig1417.3287.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2460bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1417:10479..13482+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGTCTGCCTTTCGACACCCTTCGCGTATTTTTCCTCCGAATTTCCG
ACGCCAACCAAGAATTTTCGAGGTTCCCGTTCATCCATGCCTCTCGGCAC
GTCAACAGCCGAACGAGGCGACCACCGAAGACGCCGTCAACAACGTCCAA
AGTGTCACCCCGTCGGCTGCAACAGCTGCGAAATTATCTACCGTCCAGCT
GCGAAACTTTGCCGTGGATCTGACGACTCTGCGCCTGGTGGTGGAGGCGC
TCAAGAGGTCATCGACGGTGGACACTCTTACGTTCCACAATGCTGGGCTG
ACGGAAACGTCCTTCGCTATCTTGGTGGAAGGTCTTGAGCACACCAGCGT
CCAGTGTCTCGGTCTGGACTACAACACACCGCCGTCGCCGACACCATTGC
CGGCGTCGTCGCTCTTAAAGAGAACGGGAACGGGGAACAAGCCGGAGGGT
GCAGTCCTCTCCCCGCTTTCTTCTCCAAAACGAAATTTTGCCGGCCTCGT
CCGCGAAGATGCTGTCTGCCTTTCGACACCCTTCGCGTATTTTTCCTCCG
AATTTCCGACGCCAACCAAGAATTTTCGAGGTTCCCGTTCATCCATGCCT
CTCGGCACGTCAACAGCCGAACGAGGCGACCACCGAAGACGCCGTCAACA
ACGTCCAAAGTGTCACCCCGTCGGCTGCAACAGCTGCGAAATTATCTACC
GTCCAGCTGCGAAACTTTGCCGTGGATCTGACGACTCTGCGCCTGGTGGT
GGAGGCGCTCAAGAGGTCATCGACGGTGGACACTCTTACGTTCCACAATG
CTGGGCTGACGGAAACGTCCTTCGCTATCTTGGTGGAAGGTCTTGAGCAC
ACCAGCGTCCAGTGTCTCGGTCTGGACTACAACACACCGCCGTCGCCGAC
ACCATTGCCGGCGTCGTCGCTCTTAAAGAGAACGGGAACGGGGAACAAGC
CGGAGGGTGCAGTCCTCTCCCCGCTTTCTTCTCCAAAACGAAATTTTGCC
GGCCTCGTCCGCGAAGGCTCAAAGCTTAAGGCGTTGTCCCTCAGAGGGAA
TGGGATTGACGACATCGAGGCGGTTGCTCTCGCTGAAGCCATCGAAGATA
ACACCATGCTGGGCTCGCTGAATCTTTTTGACAACAAGATCACAGACGTC
GGGCTCAAAGCTTAAGGCGTTGTCCCTCAGAGGGAATGGGATTGACGACA
TCGAGGCGGTTGCTCTCGCTGAAGCCATCGAAGATAACACCATGCTGGGC
TCGCTGAATCTTTTTGACAACAAGATCACAGACGTCGGCGCCGCTGCGTT
TGCAGCAACTCTGAGGATCAACACCGTCATGCGCGGCCTATCTTTGTCTA
GAAACTCGTTGACCTCCGCTTCAGCCCAGGCCTTCGGGCTTCTCCTGGCG
GGTGGTTACGAGGTCCTAGCCCCCGAGCTCGAAAAGCGGGCTACCGCCGA
GGAGGCAATAGCGGCACAGAACAAAATCGCCCAAGACGCCATGAAAAAGA
AAAAGGACGCTAAGGTGGAAACCCGTCTCCCGCTAAGCGCGGTTATCGTC
CAGAACGGGGCAGACGGAATCAGCAGGGCCATCGCCGGAGGAAGCCGGAG
TTTAGCGGCACTAAATCTGGCAGACAATCGGGAGCTCGGCGCGGGCGGGG
CACTTTTGACTCTCCTTTCGAGGATAGCGGAAGCGAGGAAAGAAGAGGCG
GAGGAGGCGGGTGCGAAGGCCGGGGCGGTCGTGCTGCAGGAGTTGAACTT
TGCGCGTTGTCAAGGGTATGACGAGCGGGAGGACGGGGAGGGGGAGGACC
AAGCCCTCGGGGAGGAGGCGGGGGCGATCGCTGCTGTGGTGTTCGCGCTG
AAGCCGACCAAAGTCGTGGTGTGACGCCGCTGCGTTTGCAGCAACTCTGA
GGATCAACACCGTCATGCGCGGCCTATCTTTGTCTAGAAACTCGTTGACC
TCCGCTTCAGCCCAGGCCTTCGGGCTTCTCCTGGCGGGTGGTTACGAGGT
CCTAGCCCCCGAGCTCGAAAAGCGGGCTACCGCCGAGGAGGCAATAGCGG
CACAGAACAAAATCGCCCAAGACGCCATGAAAAAGAAAAAGGACGCTAAG
GTGGAAACCCGTCTCCCGCTAAGCGCGGTTATCGTCCAGAACGGGGCAGA
CGGAATCAGCAGGGCCATCGCCGGAGGAAGCCGGAGTTTAGCGGCACTAA
ATCTGGCAGACAATCGGGAGCTCGGCGCGGGCGGGGCACTTTTGACTCTC
CTTTCGAGGATAGCGGAAGCGAGGAAAGAAGAGGCGGAGGAGGCGGGTGC
GAAGGCCGGGGCGGTCGTGCTGCAGGAGTTGAACTTTGCGCGTTGTCAAG
GGTATGACGAGCGGGAGGACGGGGAGGGGGAGGACCAAGCCCTCGGGGAG
GAGGCGGGGGCGATCGCTGCTGTGGTGTTCGCGCTGAAGCCGACCAAAGT
CGTGGTGTGA
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