prot_H-canaliculatus_F_contig1417.3287.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1417.3287.1
Unique Nameprot_H-canaliculatus_F_contig1417.3287.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length410
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1417.3287.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 8.250e-88
Identity = 236/341 (69.21%), Postives = 257/341 (75.37%), Query Frame = 0 
Query:   80 VVEALKRSSTVDTLTFHNAGLTETSFAILVEGLEHTSVQCLGLDYNTPPSPTPLPASSLLKRTGTGNKPEGAV-----LSPLSSPKRNFAGLVREGSKLKALSLRGNGIDDIEAVALAEAIEDNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLAPELEKRATAEEAIAAQNKIAQDAMKKKKDAKVETRLPLSAVIVQNGADGISRAIAGGSRSLAALNLADNRELGAGGALLTLLSRIAEARKEEAEEAG------AKAGAVVLQELNFARCQGYDEREDGEGEDQALGEEAGAIAAVVFALKPTKVVV 409
            ++EALKRSS VDT+ FHNAGLT  S  +LVEGL HT+V+C  LDYNT   P  L +SS   R       E A+         SS  RNFAGLV EGSKLKALSLRGN + D EA+ALAEAIE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVL  E EKRA A+  IAAQNK+A DAMKKKKDAKVETRLPLSAV V+ G DG SRA+AGGSRSLAALNLADNR+LG GGAL  LLSRI  ARKEEA EAG      A  G+VVLQEL+  RCQGY E        +A GE+  AIAA+ FAL+PTKVVV
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNT--LPVVLSSSSPPTRPPPSGPTEPALEEAPATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAE--------EAGGEDDTAIAAMSFALRPTKVVV 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1417.3287.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT35_ECTSI8.250e-8869.21Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 317..343
e-value: 240.0
score: 0.4
coord: 226..253
e-value: 32.0
score: 6.5
coord: 170..197
e-value: 0.63
score: 18.5
coord: 198..225
e-value: 1.8
score: 15.3
NoneNo IPR availablePANTHERPTHR46984FAMILY NOT NAMEDcoord: 159..288
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 60..335
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 30..290
e-value: 2.0E-22
score: 81.4
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 198..220
e-value: 0.0011
score: 18.8
coord: 171..185
e-value: 0.65
score: 10.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1417contigH-canaliculatus_F_contig1417:10596..12820 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1417.3287.1mRNA_H-canaliculatus_F_contig1417.3287.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1417 10479..13482 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1417.3287.1 ID=prot_H-canaliculatus_F_contig1417.3287.1|Name=mRNA_H-canaliculatus_F_contig1417.3287.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=410bp
MLSAFRHPSRIFPPNFRRQPRIFEVPVHPCLSARQQPNEATTEDAVNNVQ
SVTPSAATAAKLSTVQLRNFAVDLTTLRLVVEALKRSSTVDTLTFHNAGL
TETSFAILVEGLEHTSVQCLGLDYNTPPSPTPLPASSLLKRTGTGNKPEG
AVLSPLSSPKRNFAGLVREGSKLKALSLRGNGIDDIEAVALAEAIEDNTM
LGSLNLFDNKITDVGAAAFAATLRINTVMRGLSLSRNSLTSASAQAFGLL
LAGGYEVLAPELEKRATAEEAIAAQNKIAQDAMKKKKDAKVETRLPLSAV
IVQNGADGISRAIAGGSRSLAALNLADNRELGAGGALLTLLSRIAEARKE
EAEEAGAKAGAVVLQELNFARCQGYDEREDGEGEDQALGEEAGAIAAVVF
ALKPTKVVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf