mRNA_H-canaliculatus_F_contig14082.3227.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14082.3227.1
Unique NamemRNA_H-canaliculatus_F_contig14082.3227.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14082.3227.1 vs. uniprot
Match: A0A6H5JIA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.350e-9
Identity = 66/183 (36.07%), Postives = 82/183 (44.81%), Query Frame = 1 
Query:    1 RALIVEGLSCLAGKVRVETGRGGNXXXXXXXXXXXXXXXASSPSRRRRPKSPPRFSLQGNGAAAGDSQQGAGNPMANFDARVGGR-EPREAGPAP----LSARELSQPPAFAQESEFSPGKLEVGHL-GGLGSSLPPSHAAVNGFLDGRTFSPATAVEDAEGVGV-GTGEVDRWRSECAELAQ 528
            RAL++EGL+CLAGKVRVET RG                   SPS RRR +S    S  G    A +     G  +    +R GG  + R   PA      S R LS P     E EF  G+LEV HL G L  SLP S   + G  +   F PA   E  +   +    +V RW +E A L +
Sbjct:  140 RALVIEGLACLAGKVRVETARGNKANGRGTWSSTIRATRGLSPSPRRRTQST--HSSVGETGVASEE----GKMLQGVISRDGGDGDTRMLAPASEPDFSSLRTLSLPRVLTPEGEFPAGRLEVEHLRGSLEPSLPSSPITLTGSTNDNMFPPAPTPEKTKDRNLRAESKVGRW-AESARLTE 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14082.3227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIA0_9PHAE5.350e-936.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14082contigH-canaliculatus_F_contig14082:132..1395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1078
Cds size762
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14082.3227.1prot_H-canaliculatus_F_contig14082.3227.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14082 132..1080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.9367177-CDS-H-canaliculatus_F_contig14082:131..8091622929158.9367177-CDS-H-canaliculatus_F_contig14082:131..809Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14082 132..809 +
1696845699.2930777-CDS-H-canaliculatus_F_contig14082:131..8091696845699.2930777-CDS-H-canaliculatus_F_contig14082:131..809Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14082 132..809 +
1622929158.9659684-CDS-H-canaliculatus_F_contig14082:996..10801622929158.9659684-CDS-H-canaliculatus_F_contig14082:996..1080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14082 997..1080 +
1696845699.306851-CDS-H-canaliculatus_F_contig14082:996..10801696845699.306851-CDS-H-canaliculatus_F_contig14082:996..1080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14082 997..1080 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.981182-UTR-H-canaliculatus_F_contig14082:1080..13951622929158.981182-UTR-H-canaliculatus_F_contig14082:1080..1395Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14082 1081..1395 +
1696845699.3196323-UTR-H-canaliculatus_F_contig14082:1080..13951696845699.3196323-UTR-H-canaliculatus_F_contig14082:1080..1395Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14082 1081..1395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14082.3227.1

>prot_H-canaliculatus_F_contig14082.3227.1 ID=prot_H-canaliculatus_F_contig14082.3227.1|Name=mRNA_H-canaliculatus_F_contig14082.3227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=254bp
RALIVEGLSCLAGKVRVETGRGGNANSNGLGLSRSNASHASSPSRRRRPK
SPPRFSLQGNGAAAGDSQQGAGNPMANFDARVGGREPREAGPAPLSAREL
SQPPAFAQESEFSPGKLEVGHLGGLGSSLPPSHAAVNGFLDGRTFSPATA
VEDAEGVGVGTGEVDRWRSECAELAQSTGRQGREQPLRGGYAGGGRNSGG
GAEHRSSRKVPRGPSTRVAPDAAKARQHPSPEAPPGQAQPATKSFTTKAQ
PTS*
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mRNA from alignment at H-canaliculatus_F_contig14082:132..1395+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14082.3227.1 ID=mRNA_H-canaliculatus_F_contig14082.3227.1|Name=mRNA_H-canaliculatus_F_contig14082.3227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1264bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14082:132..1395+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGCTCTGATCGTTGAAGGGCTCTCGTGCCTCGCTGGAAAGGTGAGGGT
CGAGACGGGACGGGGCGGCAACGCCAACAGCAACGGGCTAGGGCTGAGCC
GGAGCAACGCGAGCCACGCCTCGAGCCCGTCACGCCGGCGCCGCCCGAAA
TCTCCTCCTCGCTTCTCCCTCCAGGGAAACGGAGCCGCGGCGGGAGACAG
CCAGCAAGGGGCGGGCAACCCGATGGCGAACTTCGATGCTCGTGTGGGGG
GAAGGGAGCCGCGAGAGGCAGGACCCGCCCCGTTGTCGGCGAGAGAGCTC
TCCCAGCCGCCGGCGTTTGCGCAGGAGAGCGAGTTCTCGCCGGGCAAGCT
GGAGGTGGGACATCTCGGAGGCCTCGGGTCCTCTCTGCCTCCGTCGCATG
CTGCCGTCAACGGGTTCTTGGACGGCAGAACATTCTCGCCTGCCACCGCT
GTGGAGGATGCTGAGGGCGTGGGCGTGGGGACGGGCGAGGTGGATCGATG
GCGCTCGGAGTGCGCCGAGCTCGCGCAGTCGACCGGCCGGCAGGGCAGGG
AGCAGCCACTCCGTGGCGGTTATGCGGGCGGCGGAAGGAACAGTGGCGGC
GGGGCTGAGCACCGGTCAAGCCGCAAAGTTCCGAGAGGTCCGAGCACGCG
AGTCGCTCCCGATGCAGCGAAGGCCAGAGCCGCTGCCGTCGCCGCCGTCG
CCGCCTGCGAAAGTGCTGGCCCGGAGAACGGGCAGCTTTCAGCGAGCGTT
GGCGACGTTGTTGATGGCAGCGGCGCGAGCGCTGTCGCACGCGGGCTTGA
AGGCACCGCAGAAGTGTCGGGGACGGACGTCGGCGGCGTCGCCTCATCTA
TCGCCACCGACGGAGCAACATCCCTCGCCGGAAGCTCCGCCGGGTCAAGC
ACAACCGGCAACAAAAAGCTTCACAACAAAAGCGCAGCCAACCTCGTGAG
CGCTGCTCATGCTCACGCCTCCGATAGCGCCGCGAGCGCCGAGTGGAGCG
GGCGCACCGCTAGAGGCTTTGGAGGTGCGTGGGACCGAGGCCTGATGACC
AGGATGCTGCTCGACGCTGCCGGAGTGGCAGCCGAGGCTGAACAGAAAGC
TGGAGGCTTGCGGATGCAACACGCGGGTGGAAGTGAGGCGGGTCGAATGA
CTGTCAACGGTGGTGGTGGTGGCGATGGCAATTGCGGGAATCGTGCCGGT
GTTGGCGCGGATGATACCCAAGAAGGCTACAGCGGGCAGAGCCTCGGCGA
GGAGGTGGAGGCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14082:132..1395+

>mRNA_H-canaliculatus_F_contig14082.3227.1 ID=mRNA_H-canaliculatus_F_contig14082.3227.1|Name=mRNA_H-canaliculatus_F_contig14082.3227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1524bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14082:132..1395+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGCTCTGATCGTTGAAGGGCTCTCGTGCCTCGCTGGAAAGGTGAGGGT
CGAGACGGGACGGGGCGGCAACGCCAACAGCAACGGGCTAGGGCTGAGCC
GGAGCAACGCGAGCCACGCCTCGAGCCCGTCACGCCGGCGCCGCCCGAAA
TCTCCTCCTCGCTTCTCCCTCCAGGGAAACGGAGCCGCGGCGGGAGACAG
CCAGCAAGGGGCGGGCAACCCGATGGCGAACTTCGATGCTCGTGTGGGGG
GAAGGGAGCCGCGAGAGGCAGGACCCGCCCCGTTGTCGGCGAGAGAGCTC
TCCCAGCCGCCGGCGTTTGCGCAGGAGAGCGAGTTCTCGCCGGGCAAGCT
GGAGGTGGGACATCTCGGAGGCCTCGGGTCCTCTCTGCCTCCGTCGCATG
CTGCCGTCAACGGGTTCTTGGACGGCAGAACATTCTCGCCTGCCACCGCT
GTGGAGGATGCTGAGGGCGTGGGCGTGGGGACGGGCGAGGTGGATCGATG
GCGCTCGGAGTGCGCCGAGCTCGCGCAGTCGACCGGCCGGCAGGGCAGGG
AGCAGCCACTCCGTGGCGGTTATGCGGGCGGCGGAAGGAACAGTGGCGGC
GGGGCTGAGCACCGGTCAAGCCGCAAAGTTCCGAGAGGTCCGAGCACGCG
AGTCGCTCCCGATGCAGCGAAGGCCAGAAGAGCTCTGATCGTTGAAGGGC
TCTCGTGCCTCGCTGGAAAGGTGAGGGTCGAGACGGGACGGGGCGGCAAC
GCCAACAGCAACGGGCTAGGGCTGAGCCGGAGCAACGCGAGCCACGCCTC
GAGCCCGTCACGCCGGCGCCGCCCGAAATCTCCTCCTCGCTTCTCCCTCC
AGGGAAACGGAGCCGCGGCGGGAGACAGCCAGCAAGGGGCGGGCAACCCG
ATGGCGAACTTCGATGCTCGTGTGGGGGGAAGGGAGCCGCGAGAGGCAGG
ACCCGCCCCGTTGTCGGCGAGAGAGCTCTCCCAGCCGCCGGCGTTTGCGC
AGGAGAGCGAGTTCTCGCCGGGCAAGCTGGAGGTGGGACATCTCGGAGGC
CTCGGGTCCTCTCTGCCTCCGTCGCATGCTGCCGTCAACGGGTTCTTGGA
CGGCAGAACATTCTCGCCTGCCACCGCTGTGGAGGATGCTGAGGGCGTGG
GCGTGGGGACGGGCGAGGTGGATCGATGGCGCTCGGAGTGCGCCGAGCTC
GCGCAGTCGACCGGCCGGCAGGGCAGGGAGCAGCCACTCCGTGGCGGTTA
TGCGGGCGGCGGAAGGAACAGTGGCGGCGGGGCTGAGCACCGGTCAAGCC
GCAAAGTTCCGAGAGGTCCGAGCACGCGAGTCGCTCCCGATGCAGCGAAG
GCCAGACAACATCCCTCGCCGGAAGCTCCGCCGGGTCAAGCACAACCGGC
AACAAAAAGCTTCACAACAAAAGCGCAGCCAACCTCGTGACAACATCCCT
CGCCGGAAGCTCCGCCGGGTCAAGCACAACCGGCAACAAAAAGCTTCACA
ACAAAAGCGCAGCCAACCTCGTGA
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