mRNA_H-canaliculatus_F_contig14067.3217.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14067.3217.1
Unique NamemRNA_H-canaliculatus_F_contig14067.3217.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: A0A0C6FPM0_9HYPH (Uncharacterized protein n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0C6FPM0_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-14
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1
Query:    1 TRNILRKEVIQPQVPLRLPCYDFTPVADPTVAACP 105
            T +ILRKEVIQPQVPLRLPCYDFTPVADPTV ACP
Sbjct:   15 TNSILRKEVIQPQVPLRLPCYDFTPVADPTVVACP 49          
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: A0A0N9HTQ9_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5G12 TaxID=1701325 RepID=A0A0N9HTQ9_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 2.730e-14
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    7 NILRKEVIQPQVPLRLPCYDFTPVADPTVAACPPEGLAQRRRVEPT 144
             I RKEVIQPQ+PLRLPCYDFTP+ DPT   C P GLA R RV PT
Sbjct:   21 EIPRKEVIQPQLPLRLPCYDFTPITDPTFDGCLPCGLAHRLRVLPT 66          
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: X8E3E5_MYCXE (Uncharacterized protein n=1 Tax=Mycobacterium xenopi 4042 TaxID=1299334 RepID=X8E3E5_MYCXE)

HSP 1 Score: 64.3 bits (155), Expect = 1.140e-12
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   16 RKEVIQPQVPLRLPCYDFTPVADPTVAACPPEGLAQRRRVEPT 144
            RKEVIQP +P+RLPCYDF P+ADPT  A  P GL QR RV PT
Sbjct:    4 RKEVIQPHLPVRLPCYDFVPIADPTFDASLPNGLGQRLRVLPT 46          
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: A0A0J7YQQ7_BETVV (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A0J7YQQ7_BETVV)

HSP 1 Score: 64.7 bits (156), Expect = 2.310e-12
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1
Query:    7 NILRKEVIQPQVPLRLPCYDFTPVADPTVAAC 102
             ILRKEVIQPQVPLRLPCYDFTPVADPTV +C
Sbjct:   24 QILRKEVIQPQVPLRLPCYDFTPVADPTVVSC 55          
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: A0A0P0YVL6_9HYPH (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A0P0YVL6_9HYPH)

HSP 1 Score: 64.3 bits (155), Expect = 4.390e-12
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   10 ILRKEVIQPQVPLRLPCYDFTPVADPTVAAC------PPEG 114
            +LRKEVIQPQVPLRLPCYDFTPVADPTV  C      PP G
Sbjct:   37 VLRKEVIQPQVPLRLPCYDFTPVADPTVVGCLLAVSAPPSG 77          
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: F2AB39_RHIET (Uncharacterized protein n=4 Tax=root TaxID=1 RepID=F2AB39_RHIET)

HSP 1 Score: 63.5 bits (153), Expect = 4.650e-12
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1
Query:    7 NILRKEVIQPQVPLRLPCYDFTPVADPTVAAC 102
            + LRKEVIQPQVPLRLPCYDFTPVADPTV +C
Sbjct:   10 SFLRKEVIQPQVPLRLPCYDFTPVADPTVVSC 41          
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: A0A330LZK0_9GAMM (Uncharacterized protein n=1 Tax=Shewanella benthica TaxID=43661 RepID=A0A330LZK0_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 1.010e-11
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   19 KEVIQPQVPLRLPCYDFTPVADPTVAACPPEGLAQRRRVEPTPMV 153
            KEVIQPQVPL LPCYDFTPV + TV    PEGL+    V+PTPMV
Sbjct:    8 KEVIQPQVPLGLPCYDFTPVMNHTVVNALPEGLSYLLLVQPTPMV 52          
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: G7ZB01_AZOL4 (Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) TaxID=862719 RepID=G7ZB01_AZOL4)

HSP 1 Score: 60.5 bits (145), Expect = 9.800e-11
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    7 NILRKEVIQPQVPLRLPCYDFTPVADPTVAAC 102
              LRKEVIQPQVPLRLPCYDFTPVAD TVA C
Sbjct:   20 GFLRKEVIQPQVPLRLPCYDFTPVADLTVAGC 51          
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: A0A6A5L485_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L485_LUPAL)

HSP 1 Score: 63.5 bits (153), Expect = 1.170e-10
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1
Query:    7 NILRKEVIQPQVPLRLPCYDFTPVADPTVAAC 102
            + LRKEVIQPQVPLRLPCYDFTPVADPTV +C
Sbjct:  194 SFLRKEVIQPQVPLRLPCYDFTPVADPTVVSC 225          
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Match: D9VQ42_9ACTN (Uncharacterized protein (Fragment) n=3 Tax=Streptomyces TaxID=1883 RepID=D9VQ42_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 9.080e-10
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   10 ILRKEVIQPQVPLRLPCYDFTPVADPTVAACPPEGLAQRRRV 135
            +LRKEVIQP +P+RLPCYDF P+A PT  +  P GL  R RV
Sbjct:    8 LLRKEVIQPHLPVRLPCYDFVPIAGPTFDSSLPYGLGHRLRV 49          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14067.3217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C6FPM0_9HYPH1.010e-1491.43Uncharacterized protein n=3 Tax=Hyphomicrobiales T... [more]
A0A0N9HTQ9_9BACT2.730e-1471.74Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
X8E3E5_MYCXE1.140e-1269.77Uncharacterized protein n=1 Tax=Mycobacterium xeno... [more]
A0A0J7YQQ7_BETVV2.310e-1290.63Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A0P0YVL6_9HYPH4.390e-1275.61Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
F2AB39_RHIET4.650e-1287.50Uncharacterized protein n=4 Tax=root TaxID=1 RepID... [more]
A0A330LZK0_9GAMM1.010e-1168.89Uncharacterized protein n=1 Tax=Shewanella benthic... [more]
G7ZB01_AZOL49.800e-1187.50Uncharacterized protein n=1 Tax=Azospirillum lipof... [more]
A0A6A5L485_LUPAL1.170e-1087.50Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
D9VQ42_9ACTN9.080e-1061.90Uncharacterized protein (Fragment) n=3 Tax=Strepto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14067contigH-canaliculatus_F_contig14067:2586..2741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.9
Seed ortholog evalue6.6e-09
Seed eggNOG ortholog928210.CALU01000057_gene333
EggNOG OGs1PWSF@1224,2E4EA@1,2V587@28211,32Z9I@2,48UAE@772
Best tax levelBartonellaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929157.574831-CDS-H-canaliculatus_F_contig14067:2585..27411622929157.574831-CDS-H-canaliculatus_F_contig14067:2585..2741Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14067 2586..2741 +
1696845698.5924613-CDS-H-canaliculatus_F_contig14067:2585..27411696845698.5924613-CDS-H-canaliculatus_F_contig14067:2585..2741Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14067 2586..2741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14067.3217.1prot_H-canaliculatus_F_contig14067.3217.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14067 2586..2741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14067.3217.1

>prot_H-canaliculatus_F_contig14067.3217.1 ID=prot_H-canaliculatus_F_contig14067.3217.1|Name=mRNA_H-canaliculatus_F_contig14067.3217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=52bp
TRNILRKEVIQPQVPLRLPCYDFTPVADPTVAACPPEGLAQRRRVEPTPM
V*
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mRNA from alignment at H-canaliculatus_F_contig14067:2586..2741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14067.3217.1 ID=mRNA_H-canaliculatus_F_contig14067.3217.1|Name=mRNA_H-canaliculatus_F_contig14067.3217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=156bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14067:2586..2741+ (Hapterophycus canaliculatus Oshoro5f female)
ACTAGAAACATCCTTAGAAAGGAGGTGATCCAGCCGCAGGTTCCCCTACG GCTACCTTGTTACGACTTCACCCCAGTCGCTGATCCTACCGTGGCCGCCT GCCCCCCCGAAGGGTTAGCGCAGCGTCGTCGGGTAGAACCAACTCCCATG GTGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14067:2586..2741+

>mRNA_H-canaliculatus_F_contig14067.3217.1 ID=mRNA_H-canaliculatus_F_contig14067.3217.1|Name=mRNA_H-canaliculatus_F_contig14067.3217.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14067:2586..2741+ (Hapterophycus canaliculatus Oshoro5f female)
ACTAGAAACATCCTTAGAAAGGAGGTGATCCAGCCGCAGGTTCCCCTACG
GCTACCTTGTTACGACTTCACCCCAGTCGCTGATCCTACCGTGGCCGCCT
GCCCCCCCGAAGGGTTAGCGCAGCGTCGTCGGGTAGAACCAACTCCCATG
GTGTGAACTAGAAACATCCTTAGAAAGGAGGTGATCCAGCCGCAGGTTCC
CCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGATCCTACCGTGG
CCGCCTGCCCCCCCGAAGGGTTAGCGCAGCGTCGTCGGGTAGAACCAACT
CCCATGGTGTGA
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