mRNA_H-canaliculatus_F_contig14005.3187.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14005.3187.1
Unique NamemRNA_H-canaliculatus_F_contig14005.3187.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14005.3187.1 vs. uniprot
Match: A0A6H5KZS0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.090e-31
Identity = 153/386 (39.64%), Postives = 188/386 (48.70%), Query Frame = 1 
Query:    1 MHSDETI-DVFSPFWAFPGAHGHLGSAVDTHN-------NDKPSKPDVGGAAVXXXXXXXXXXXXXKEMGAVEHRM-EN---DIMDVGGGLSFGGLAGEVEQIADNVDGFLDDFLALGG------------GADGE----IAEEDLCWLEEMDPTAFLPXXXXXXXXXXXVAAGRD-DRLPSPAHEIKLTVPLVAEVAEGGEARWTPAAPAPV---------------LAAAPVPAGGPAIAAVG-VTPSSAGTPAASAPVGS-DTNGVNGESVQEGFPVVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRQKVERYLEKRKRRRWSKVSSYQSRQRVANARPRHKGRFLPLESEFVPIAELQRRQRNLVKEMRDKAAA 1020
            MH DETI ++++PF A  GAH  L   VD+         N+  S+   GG +                +   E+   EN   D MDVG  +S  G       IADNVDGFLD+F+AL G            G +GE    I+EE L +L +MD   FLP                   R PS  HEI++   +VA    GG                           +  +PV  GG  ++ VG V+P  +   AA A V      GVN +           XXXXXXXXXXXXXX                 Q+RRQKV RYL K++RRRWSK S YQSRQRVAN+RPRHKGRFLPLESEFVPIAE+QRRQR L+ +MR+KAAA
Sbjct:    1 MHDDETIINMYAPFRACSGAHRPLKGTVDSSRRKINAGGNNGNSEVGAGGGSTATVPAAGTLCKNKNSIIITENESGENKQLDSMDVGLNVSGEG------DIADNVDGFLDEFIALAGDDDYGDSMMLEEGCEGEGGAAISEEGLAYLADMDLADFLPAGSAKGASNAGTGXXXXAPRSPSSDHEIEILPDIVA----GGXXXXXXXXXXXXXXXXXXXXXXXXXGGVMGSPVAGGGAEVSGVGDVSPIRSVAAAAVAAVEVVAAPGVNADGXXXXXXXX--XXXXXXXXXXXXXXDWDGGDDDADAIVSLKEQVRRQKVARYLAKKQRRRWSKASCYQSRQRVANSRPRHKGRFLPLESEFVPIAEVQRRQRVLMAQMREKAAA 374
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BLAST of mRNA_H-canaliculatus_F_contig14005.3187.1 vs. uniprot
Match: A0A6H5KKD0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD0_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.110e-29
Identity = 171/366 (46.72%), Postives = 200/366 (54.64%), Query Frame = 1 
Query:    1 MHSDETIDVFSPFWAFPGAHGHLGSAVDTHNNDKPSKPDVGGAAVXXXXXXXXXXXXXKEMGAVEHRMENDIMDVGGGLSFGGLAGEVEQIADNVDGFLDDFLALGGGADG----------------EIAEEDLCWLEEMDPTAFLPXXXXXXXXXXXVAAGRDDRL--PSPAHEIKLTVPLVAEVAEGGEARWTPAAPAPVLAAAPVPAGGPAIAAVGVTPSSAGTPA--ASAPVGSDTNGVNGESVQEGFPVVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRQKVERYLEKRKRRRWSK--VSSYQSRQRVANARPRHKGRFLPLESEFVPIAELQRRQRNLVKEMRDKAAALART 1032
            MH DETI + +PFWAF GAH  +  +  T N     K +      XXXXXXXXXXXXX                 G  +  GG  G+   IADNVDGFLD+F+ L GG D                  I+EEDL +L +MD   FLP           + A   D L  PS  HE++ T+P     ++GG         +PV+ AA     GPA                 A AP G +T+G               XXXXXXXXXXXXXXXXXXXXXXXXXX     Q+RRQKV RYL K++RR WSK   SSYQSRQRVAN+RPRHKGRFLPLESEFVPIAELQRRQR L+ +MR+KAAA A T
Sbjct:    1 MHDDETIGMHAPFWAFSGAHRPVEES--TVNGGSGRKTNSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDVVVGGHDGD---IADNVDGFLDEFMVLAGGNDDGNDYGMXXXXXXXXXPAISEEDLVFLADMDLADFLPPA---------ITAEEGDALLSPSSVHEME-TLP-----SQGGRVA------SPVMTAAAEATLGPAXXXXXXXXXXXXXXXXXAVAP-GVETDGRGAARXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXISPKEQVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAAASAAT 333
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BLAST of mRNA_H-canaliculatus_F_contig14005.3187.1 vs. uniprot
Match: D8LIC1_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC1_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 6.600e-26
Identity = 152/359 (42.34%), Postives = 180/359 (50.14%), Query Frame = 1 
Query:    1 MHSDETIDVFSPFWAFPGAHGHLG-SAVDTHNNDKPSKPDVGGAAVXXXXXXXXXXXXXKEMGAVEHRMENDIMDVGGGLSFGGLAGEVEQIADNVDGFLDDFLALGGGADGE--------------IAEEDLCWLEEMDPTAFLPXXXXXXXXXXXVAAGRDDRLPSPAHEIKLTVPLVAEVAEGGEARWTPAAPAPVLAAAPVPAGGPAIAAVGVTPSSAGTPAASAPVGSDTNGVNGESVQEGFPVVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRQKVERYLEKRKRRRWSK--VSSYQSRQRVANARPRHKGRFLPLESEFVPIAELQRRQRNLVKEMRDKAAALA 1026
            MH DETI + +PFWAF GAH  +  S VD+ ++ + +    GG A        XXXXXX                 G  +   G  G+   IADNVDGFLD+F+AL GG D +              I+EEDL +L +MD   FLP           ++       PS  HE++ TVP     +EGG                                                                 XXXXXXXXXXXXXXXXXXXXXXXXXX     Q+RRQKV RYL K++RR WSK   SSYQSRQRVAN+RPRHKGRFLPLESEFVPIAELQRRQR L+ +MR+KAAA A
Sbjct:    1 MHDDETIAMHAPFWAFSGAHRPVEESTVDSSSSGRKANNAGGGIANKYSIEAGXXXXXXXXXXXXXXXXPGKGSSGGRDVVVNGHEGD---IADNVDGFLDEFMALAGGNDEDYGMMLEXXXXXXPAISEEDLVFLADMDLADFLPPATTAEDGGALLS-------PSSVHEME-TVP-----SEGGGVSXXXXXXXXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLKEQVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAAAAA 330
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BLAST of mRNA_H-canaliculatus_F_contig14005.3187.1 vs. uniprot
Match: D7G0D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D0_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 6.060e-12
Identity = 80/206 (38.83%), Postives = 100/206 (48.54%), Query Frame = 1 
Query:    1 MHSDETI-DVFSPFWAFPGAHGHLGSAVDTHNNDKPSKPDVGGAAVXXXXXXXXXXXXXKEMGAV--------------EHRMENDIMDVGGGLSFGGLAGEVEQIADNVDGFLDDFLALGG----------------GADGEIAEEDLCWLEEMDPTAFLPXXXXXXXXXXXVAAGRDDRL-PSPAHEIKLTVPLVAEVAEGGEA 522
            MH+DETI  +++PFWA  GAH  +   VD+ +    +  + G + V XXXXXXXXXXXX  +G                  R + D MDVG  +S  G       IADNVDGFLD+F+AL G                G    I+EEDL +L +MD   FLP            +AG    L PS AHEI+    L   VA GGEA
Sbjct:    1 MHNDETIISMYAPFWACSGAHRPVEGTVDSSDRKINAGGNNGNSEVGXXXXXXXXXXXXXXLGKXXXXXXXXXXXESGENQRKQLDSMDVGLNVSGEG------DIADNVDGFLDEFIALAGDDDYGDSMMLEEGCEGGGGAAISEEDLAYLADMDLADFLPAGAAEGAPEAGTSAGGGAPLSPSSAHEIET---LPDHVAGGGEA 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14005.3187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KZS0_9PHAE1.090e-3139.64CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KKD0_9PHAE2.110e-2946.72CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LIC1_ECTSI6.600e-2642.34CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0D0_ECTSI6.060e-1238.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14005contigH-canaliculatus_F_contig14005:627..1709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1083
Cds size1083
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929151.688187-CDS-H-canaliculatus_F_contig14005:626..17091622929151.688187-CDS-H-canaliculatus_F_contig14005:626..1709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14005 627..1709 -
1696845696.4787955-CDS-H-canaliculatus_F_contig14005:626..17091696845696.4787955-CDS-H-canaliculatus_F_contig14005:626..1709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14005 627..1709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14005.3187.1prot_H-canaliculatus_F_contig14005.3187.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14005 627..1709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14005.3187.1

>prot_H-canaliculatus_F_contig14005.3187.1 ID=prot_H-canaliculatus_F_contig14005.3187.1|Name=mRNA_H-canaliculatus_F_contig14005.3187.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=361bp
MHSDETIDVFSPFWAFPGAHGHLGSAVDTHNNDKPSKPDVGGAAVAEQTS
SSSSSNNNKEMGAVEHRMENDIMDVGGGLSFGGLAGEVEQIADNVDGFLD
DFLALGGGADGEIAEEDLCWLEEMDPTAFLPPPPPLPPSSDDVAAGRDDR
LPSPAHEIKLTVPLVAEVAEGGEARWTPAAPAPVLAAAPVPAGGPAIAAV
GVTPSSAGTPAASAPVGSDTNGVNGESVQEGFPVVGAAAAAAAASGAPFD
SAGGAAAAAAAATVTQKEQLRRQKVERYLEKRKRRRWSKVSSYQSRQRVA
NARPRHKGRFLPLESEFVPIAELQRRQRNLVKEMRDKAAALARTADAGVV
SPDFNQHVAV*
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mRNA from alignment at H-canaliculatus_F_contig14005:627..1709-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14005.3187.1 ID=mRNA_H-canaliculatus_F_contig14005.3187.1|Name=mRNA_H-canaliculatus_F_contig14005.3187.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14005:627..1709- (Hapterophycus canaliculatus Oshoro5f female)
ATGCACAGCGACGAGACCATCGACGTGTTCTCCCCCTTCTGGGCCTTCCC
CGGAGCGCACGGCCACCTCGGCAGCGCTGTGGACACCCACAATAACGATA
AGCCCAGCAAGCCCGACGTCGGCGGCGCGGCAGTCGCCGAGCAGACGAGC
AGCAGCAGCAGCAGCAACAATAACAAAGAGATGGGCGCCGTGGAGCACCG
GATGGAGAACGACATCATGGACGTCGGCGGCGGCTTGAGCTTCGGCGGCC
TCGCCGGCGAGGTGGAGCAGATCGCGGATAACGTAGACGGGTTCCTGGAC
GACTTCTTGGCGCTCGGCGGCGGTGCGGACGGAGAGATCGCCGAGGAGGA
CCTGTGCTGGCTCGAGGAAATGGACCCGACCGCTTTCCTGCCGCCGCCGC
CGCCGCTGCCGCCGTCGTCTGACGACGTGGCCGCTGGCCGCGACGACCGG
CTGCCGTCTCCCGCCCATGAAATCAAGCTGACGGTGCCGCTGGTGGCGGA
GGTGGCGGAGGGCGGCGAGGCGCGGTGGACTCCTGCTGCTCCCGCTCCTG
TACTCGCTGCCGCTCCAGTTCCAGCTGGCGGTCCCGCCATCGCCGCTGTG
GGAGTGACCCCGTCCTCGGCGGGGACACCCGCGGCGAGTGCGCCGGTGGG
GTCGGACACGAATGGCGTGAACGGTGAAAGCGTCCAAGAGGGTTTCCCCG
TCGTCGGCGCTGCCGCCGCTGCCGCCGCTGCTAGTGGTGCGCCCTTTGAT
AGCGCTGGCGGTGCCGCCGCCGCGGCCGCCGCCGCCACGGTCACCCAGAA
GGAGCAGCTGCGACGGCAAAAGGTGGAGCGCTACCTGGAGAAGAGGAAGC
GCCGCCGCTGGTCGAAGGTCTCCTCGTACCAGAGCCGGCAGAGGGTGGCC
AACGCCCGGCCGAGGCACAAGGGGCGCTTCCTGCCCCTCGAGTCCGAGTT
CGTCCCGATCGCGGAGCTGCAGCGGCGGCAGCGGAACCTCGTCAAGGAGA
TGCGGGACAAGGCAGCGGCCTTGGCGAGGACGGCGGACGCTGGGGTGGTG
TCCCCGGACTTCAATCAGCATGTGGCCGTTTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14005:627..1709-

>mRNA_H-canaliculatus_F_contig14005.3187.1 ID=mRNA_H-canaliculatus_F_contig14005.3187.1|Name=mRNA_H-canaliculatus_F_contig14005.3187.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2166bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14005:627..1709- (Hapterophycus canaliculatus Oshoro5f female)
ATGCACAGCGACGAGACCATCGACGTGTTCTCCCCCTTCTGGGCCTTCCC
CGGAGCGCACGGCCACCTCGGCAGCGCTGTGGACACCCACAATAACGATA
AGCCCAGCAAGCCCGACGTCGGCGGCGCGGCAGTCGCCGAGCAGACGAGC
AGCAGCAGCAGCAGCAACAATAACAAAGAGATGGGCGCCGTGGAGCACCG
GATGGAGAACGACATCATGGACGTCGGCGGCGGCTTGAGCTTCGGCGGCC
TCGCCGGCGAGGTGGAGCAGATCGCGGATAACGTAGACGGGTTCCTGGAC
GACTTCTTGGCGCTCGGCGGCGGTGCGGACGGAGAGATCGCCGAGGAGGA
CCTGTGCTGGCTCGAGGAAATGGACCCGACCGCTTTCCTGCCGCCGCCGC
CGCCGCTGCCGCCGTCGTCTGACGACGTGGCCGCTGGCCGCGACGACCGG
CTGCCGTCTCCCGCCCATGAAATCAAGCTGACGGTGCCGCTGGTGGCGGA
GGTGGCGGAGGGCGGCGAGGCGCGGTGGACTCCTGCTGCTCCCGCTCCTG
TACTCGCTGCCGCTCCAGTTCCAGCTGGCGGTCCCGCCATCGCCGCTGTG
GGAGTGACCCCGTCCTCGGCGGGGACACCCGCGGCGAGTGCGCCGGTGGG
GTCGGACACGAATGGCGTGAACGGTGAAAGCGTCCAAGAGGGTTTCCCCG
TCGTCGGCGCTGCCGCCGCTGCCGCCGCTGCTAGTGGTGCGCCCTTTGAT
AGCGCTGGCGGTGCCGCCGCCGCGGCCGCCGCCGCCACGGTCACCCAGAA
GGAGCAGCTGCGACGGCAAAAGGTGGAGCGCTACCTGGAGAAGAGGAAGC
GCCGCCGCTGGTCGAAGGTCTCCTCGTACCAGAGCCGGCAGAGGGTGGCC
AACGCCCGGCCGAGGCACAAGGGGCGCTTCCTGCCCCTCGAGTCCGAGTT
CGTCCCGATCGCGGAGCTGCAGCGGCGGCAGCGGAACCTCGTCAAGGAGA
TGCGGGACAAGGCAGCGGCCTTGGCGAGGACGGCGGACGCTGGGGTGGTG
TCCCCGGACTTCAATCAGCATGTGGCCGTTTAAATGCACAGCGACGAGAC
CATCGACGTGTTCTCCCCCTTCTGGGCCTTCCCCGGAGCGCACGGCCACC
TCGGCAGCGCTGTGGACACCCACAATAACGATAAGCCCAGCAAGCCCGAC
GTCGGCGGCGCGGCAGTCGCCGAGCAGACGAGCAGCAGCAGCAGCAGCAA
CAATAACAAAGAGATGGGCGCCGTGGAGCACCGGATGGAGAACGACATCA
TGGACGTCGGCGGCGGCTTGAGCTTCGGCGGCCTCGCCGGCGAGGTGGAG
CAGATCGCGGATAACGTAGACGGGTTCCTGGACGACTTCTTGGCGCTCGG
CGGCGGTGCGGACGGAGAGATCGCCGAGGAGGACCTGTGCTGGCTCGAGG
AAATGGACCCGACCGCTTTCCTGCCGCCGCCGCCGCCGCTGCCGCCGTCG
TCTGACGACGTGGCCGCTGGCCGCGACGACCGGCTGCCGTCTCCCGCCCA
TGAAATCAAGCTGACGGTGCCGCTGGTGGCGGAGGTGGCGGAGGGCGGCG
AGGCGCGGTGGACTCCTGCTGCTCCCGCTCCTGTACTCGCTGCCGCTCCA
GTTCCAGCTGGCGGTCCCGCCATCGCCGCTGTGGGAGTGACCCCGTCCTC
GGCGGGGACACCCGCGGCGAGTGCGCCGGTGGGGTCGGACACGAATGGCG
TGAACGGTGAAAGCGTCCAAGAGGGTTTCCCCGTCGTCGGCGCTGCCGCC
GCTGCCGCCGCTGCTAGTGGTGCGCCCTTTGATAGCGCTGGCGGTGCCGC
CGCCGCGGCCGCCGCCGCCACGGTCACCCAGAAGGAGCAGCTGCGACGGC
AAAAGGTGGAGCGCTACCTGGAGAAGAGGAAGCGCCGCCGCTGGTCGAAG
GTCTCCTCGTACCAGAGCCGGCAGAGGGTGGCCAACGCCCGGCCGAGGCA
CAAGGGGCGCTTCCTGCCCCTCGAGTCCGAGTTCGTCCCGATCGCGGAGC
TGCAGCGGCGGCAGCGGAACCTCGTCAAGGAGATGCGGGACAAGGCAGCG
GCCTTGGCGAGGACGGCGGACGCTGGGGTGGTGTCCCCGGACTTCAATCA
GCATGTGGCCGTTTAA
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