mRNA_H-canaliculatus_F_contig1397.3141.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: D7G6A7_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A7_ECTSI) HSP 1 Score: 241 bits (615), Expect = 6.090e-80 Identity = 112/126 (88.89%), Postives = 119/126 (94.44%), Query Frame = 1
Query: 1 AQEVIFEITSKEHFDDVVSRAAGADGHEGYHDAQGSWRVPHKLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT 378
AQEVIFEITS EHF+DVVSRAAGAD HEGY DAQG+WRVPHKLMMV++HAGWCRVCKGLQPKLLKL+ +HPEVLCCKINK +EELA KLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT
Sbjct: 41 AQEVIFEITSAEHFEDVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQIHAGWCRVCKGLQPKLLKLITKHPEVLCCKINKAHHEELAAKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT 166
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A835Z3K6_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K6_9STRA) HSP 1 Score: 157 bits (396), Expect = 6.060e-47 Identity = 69/126 (54.76%), Postives = 95/126 (75.40%), Query Frame = 1
Query: 1 AQEVIFEITSKEHFDDVVSRAAGADGHE-GYHDAQGSWRVPHKLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDN 375
A + + EITS EH D +++ AA + + GY D G+ R+PH+L+M++VHA WCR C G++PKLLKL ARHPEVLCCK+NK +E++A +LG+R LP + YKNGKR+DH TTA+I TIE+ + DN
Sbjct: 15 ATDCVVEITSNEHLDRILATAAQVENPDAGYVDHHGNQRLPHRLIMIQVHANWCRACIGVRPKLLKLCARHPEVLCCKLNKGNHEDVAARLGIRALPTFVLYKNGKRIDHFTTADIETIEQGVLDN 140
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A7R9U8D8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D8_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.590e-30 Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 1 AQEVIFEITSKEHFDDVVSRAAGADGHEGYHDAQGSWRVPHKLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDN 375
A E + ++TS+E FD ++S AAGA+ + PHK++M+ VHA WCR CK L + LK+ HPEVLC K+N N E+ LG+RG+P+ I YK GKR+DH N + +EE + DN
Sbjct: 88 AMETLIDVTSQEQFDFIISHAAGAN-------PLSPDQKPHKMVMLMVHATWCRKCKYLMKQYLKVAKAHPEVLCLKLNLATNAEVGKSLGIRGVPLFIIYKAGKRIDHFYAENADDLEEQVEDN 205
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: UPI001C8EB8A6 (thioredoxin n=1 Tax=Crocinitomix sp. GM2_3_6_6 TaxID=2862509 RepID=UPI001C8EB8A6) HSP 1 Score: 62.0 bits (149), Expect = 4.530e-10 Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 1
Query: 121 HKLMMVEVHAGWCRVCKGLQPKLLKLVAR-HPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRV 321
H +++V+ HA WC CK L P L L + ++ KI+ K++ L+G+LGVRG+P +I YK+GK+V
Sbjct: 11 HPIVLVDFHATWCGPCKALAPILKDLKNKMKDQIKIVKIDVDKHQVLSGQLGVRGVPTMILYKDGKQV 78
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A1B8TUF0_9FLAO (Thioredoxin n=2 Tax=Polaribacter TaxID=52959 RepID=A0A1B8TUF0_9FLAO) HSP 1 Score: 62.0 bits (149), Expect = 5.350e-10 Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 121 HKLMMVEVHAGWCRVCKGLQPKLLKLVARHPE-VLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHT 333
+ ++++ +A WC C+ L P + KL + V K+N N+ELA K G+R +P L+F+K+GK VD HT
Sbjct: 17 NSTVLLDFYADWCGPCQTLLPTIHKLADELKDNVTIKKVNVDNNQELAAKFGIRNIPTLVFFKDGKAVDKHT 88
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A1B1U5P4_9HELI (Thioredoxin n=1 Tax=Helicobacter enhydrae TaxID=222136 RepID=A0A1B1U5P4_9HELI) HSP 1 Score: 61.6 bits (148), Expect = 7.550e-10 Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 127 LMMVEVHAGWCRVCKGLQPKLLKLVARHP-EVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRD 372
+ +V+ A WC C+ L P + KL + + CK+N + EEL+ + G+R +P ++F+K+GK VD AN E+AI+D
Sbjct: 20 VALVDFWAPWCGPCRMLSPVIDKLADEYESKARICKVNTDEQEELSAQFGIRSIPTILFFKDGKVVDQMVGANS---EQAIKD 99
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A7L5CE89_9GAMM (Thioredoxin n=3 Tax=Francisella TaxID=262 RepID=A0A7L5CE89_9GAMM) HSP 1 Score: 61.6 bits (148), Expect = 8.110e-10 Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 1
Query: 124 KLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVD 324
K ++V+ +A WC CK L P L +L + L K+N N+ LAG+ G+R +P +I +KNGK+V+
Sbjct: 23 KPVLVDFYADWCGPCKTLGPILDQLSKDYKNALIVKVNVDDNQNLAGQFGIRSIPTMIIFKNGKQVE 89
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A7C4UZH4_9ARCH (Thioredoxin n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A7C4UZH4_9ARCH) HSP 1 Score: 61.2 bits (147), Expect = 9.920e-10 Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 133 MVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTT-ANINTIEEAIRD 372
+V+ A WC CK + P + H E L K+N + EL+ LG+RG+P LIF+++GK V H A+ +E I+D
Sbjct: 19 VVDFWAPWCGPCKMMAPVFEETSKTHNEALFAKVNTDEEPELSTSLGIRGIPTLIFFRDGKEVARHVGYADKRVLEAKIKD 99
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A2E6PZF8_9EURY (Thioredoxin n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6PZF8_9EURY) HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9 Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 130 MMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTA 339
++V+ A WC C+ L P +L +A E+ K+N +N G+ GVRG+P L+ + NGK VD HT A
Sbjct: 22 VLVDFWAPWCGPCRALSP-VLNSIADEREITIAKVNTDQNPVTPGEYGVRGIPYLVLFHNGKPVDQHTGA 90
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A061S1S4_9CHLO (Thioredoxin-like chloroplastic-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S1S4_9CHLO) HSP 1 Score: 62.8 bits (151), Expect = 2.000e-9 Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 124 KLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYK-NGKRVDHHTTA--NINTIEEAI 366
+L++V+ +A WC C+GL P+L KL+ HP+V K+ N L LGV+ LP FY+ N R+D + + I +++AI
Sbjct: 99 RLVIVDFYATWCHACRGLYPRLSKLMEEHPDVKLLKVEFESNRSLCKSLGVKVLPFFHFYRGNEGRLDAFSASLKKIGRLKDAI 182 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1397.3141.1 >prot_H-canaliculatus_F_contig1397.3141.1 ID=prot_H-canaliculatus_F_contig1397.3141.1|Name=mRNA_H-canaliculatus_F_contig1397.3141.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp AQEVIFEITSKEHFDDVVSRAAGADGHEGYHDAQGSWRVPHKLMMVEVHAback to top mRNA from alignment at H-canaliculatus_F_contig1397:2..1263+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1397.3141.1 ID=mRNA_H-canaliculatus_F_contig1397.3141.1|Name=mRNA_H-canaliculatus_F_contig1397.3141.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1262bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1397:2..1263+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1397:2..1263+ >mRNA_H-canaliculatus_F_contig1397.3141.1 ID=mRNA_H-canaliculatus_F_contig1397.3141.1|Name=mRNA_H-canaliculatus_F_contig1397.3141.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1397:2..1263+ (Hapterophycus canaliculatus Oshoro5f female)back to top |