mRNA_H-canaliculatus_F_contig1397.3141.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1397.3141.1
Unique NamemRNA_H-canaliculatus_F_contig1397.3141.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: D7G6A7_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A7_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 6.090e-80
Identity = 112/126 (88.89%), Postives = 119/126 (94.44%), Query Frame = 1
Query:    1 AQEVIFEITSKEHFDDVVSRAAGADGHEGYHDAQGSWRVPHKLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT 378
            AQEVIFEITS EHF+DVVSRAAGAD HEGY DAQG+WRVPHKLMMV++HAGWCRVCKGLQPKLLKL+ +HPEVLCCKINK  +EELA KLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT
Sbjct:   41 AQEVIFEITSAEHFEDVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQIHAGWCRVCKGLQPKLLKLITKHPEVLCCKINKAHHEELAAKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT 166          
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A835Z3K6_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K6_9STRA)

HSP 1 Score: 157 bits (396), Expect = 6.060e-47
Identity = 69/126 (54.76%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 AQEVIFEITSKEHFDDVVSRAAGADGHE-GYHDAQGSWRVPHKLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDN 375
            A + + EITS EH D +++ AA  +  + GY D  G+ R+PH+L+M++VHA WCR C G++PKLLKL ARHPEVLCCK+NK  +E++A +LG+R LP  + YKNGKR+DH TTA+I TIE+ + DN
Sbjct:   15 ATDCVVEITSNEHLDRILATAAQVENPDAGYVDHHGNQRLPHRLIMIQVHANWCRACIGVRPKLLKLCARHPEVLCCKLNKGNHEDVAARLGIRALPTFVLYKNGKRIDHFTTADIETIEQGVLDN 140          
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A7R9U8D8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.590e-30
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 AQEVIFEITSKEHFDDVVSRAAGADGHEGYHDAQGSWRVPHKLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDN 375
            A E + ++TS+E FD ++S AAGA+            + PHK++M+ VHA WCR CK L  + LK+   HPEVLC K+N   N E+   LG+RG+P+ I YK GKR+DH    N + +EE + DN
Sbjct:   88 AMETLIDVTSQEQFDFIISHAAGAN-------PLSPDQKPHKMVMLMVHATWCRKCKYLMKQYLKVAKAHPEVLCLKLNLATNAEVGKSLGIRGVPLFIIYKAGKRIDHFYAENADDLEEQVEDN 205          
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: UPI001C8EB8A6 (thioredoxin n=1 Tax=Crocinitomix sp. GM2_3_6_6 TaxID=2862509 RepID=UPI001C8EB8A6)

HSP 1 Score: 62.0 bits (149), Expect = 4.530e-10
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  121 HKLMMVEVHAGWCRVCKGLQPKLLKLVAR-HPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRV 321
            H +++V+ HA WC  CK L P L  L  +   ++   KI+  K++ L+G+LGVRG+P +I YK+GK+V
Sbjct:   11 HPIVLVDFHATWCGPCKALAPILKDLKNKMKDQIKIVKIDVDKHQVLSGQLGVRGVPTMILYKDGKQV 78          
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A1B8TUF0_9FLAO (Thioredoxin n=2 Tax=Polaribacter TaxID=52959 RepID=A0A1B8TUF0_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 5.350e-10
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  121 HKLMMVEVHAGWCRVCKGLQPKLLKLVARHPE-VLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHT 333
            +  ++++ +A WC  C+ L P + KL     + V   K+N   N+ELA K G+R +P L+F+K+GK VD HT
Sbjct:   17 NSTVLLDFYADWCGPCQTLLPTIHKLADELKDNVTIKKVNVDNNQELAAKFGIRNIPTLVFFKDGKAVDKHT 88          
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A1B1U5P4_9HELI (Thioredoxin n=1 Tax=Helicobacter enhydrae TaxID=222136 RepID=A0A1B1U5P4_9HELI)

HSP 1 Score: 61.6 bits (148), Expect = 7.550e-10
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  127 LMMVEVHAGWCRVCKGLQPKLLKLVARHP-EVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRD 372
            + +V+  A WC  C+ L P + KL   +  +   CK+N  + EEL+ + G+R +P ++F+K+GK VD    AN    E+AI+D
Sbjct:   20 VALVDFWAPWCGPCRMLSPVIDKLADEYESKARICKVNTDEQEELSAQFGIRSIPTILFFKDGKVVDQMVGANS---EQAIKD 99          
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A7L5CE89_9GAMM (Thioredoxin n=3 Tax=Francisella TaxID=262 RepID=A0A7L5CE89_9GAMM)

HSP 1 Score: 61.6 bits (148), Expect = 8.110e-10
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 1
Query:  124 KLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVD 324
            K ++V+ +A WC  CK L P L +L   +   L  K+N   N+ LAG+ G+R +P +I +KNGK+V+
Sbjct:   23 KPVLVDFYADWCGPCKTLGPILDQLSKDYKNALIVKVNVDDNQNLAGQFGIRSIPTMIIFKNGKQVE 89          
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A7C4UZH4_9ARCH (Thioredoxin n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A7C4UZH4_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 9.920e-10
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1
Query:  133 MVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTT-ANINTIEEAIRD 372
            +V+  A WC  CK + P   +    H E L  K+N  +  EL+  LG+RG+P LIF+++GK V  H   A+   +E  I+D
Sbjct:   19 VVDFWAPWCGPCKMMAPVFEETSKTHNEALFAKVNTDEEPELSTSLGIRGIPTLIFFRDGKEVARHVGYADKRVLEAKIKD 99          
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A2E6PZF8_9EURY (Thioredoxin n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6PZF8_9EURY)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1
Query:  130 MMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYKNGKRVDHHTTA 339
            ++V+  A WC  C+ L P +L  +A   E+   K+N  +N    G+ GVRG+P L+ + NGK VD HT A
Sbjct:   22 VLVDFWAPWCGPCRALSP-VLNSIADEREITIAKVNTDQNPVTPGEYGVRGIPYLVLFHNGKPVDQHTGA 90          
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Match: A0A061S1S4_9CHLO (Thioredoxin-like chloroplastic-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S1S4_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 2.000e-9
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  124 KLMMVEVHAGWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIFYK-NGKRVDHHTTA--NINTIEEAI 366
            +L++V+ +A WC  C+GL P+L KL+  HP+V   K+    N  L   LGV+ LP   FY+ N  R+D  + +   I  +++AI
Sbjct:   99 RLVIVDFYATWCHACRGLYPRLSKLMEEHPDVKLLKVEFESNRSLCKSLGVKVLPFFHFYRGNEGRLDAFSASLKKIGRLKDAI 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1397.3141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6A7_ECTSI6.090e-8088.89Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A835Z3K6_9STRA6.060e-4754.76Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7R9U8D8_9STRA1.590e-3044.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
UPI001C8EB8A64.530e-1042.65thioredoxin n=1 Tax=Crocinitomix sp. GM2_3_6_6 Tax... [more]
A0A1B8TUF0_9FLAO5.350e-1038.89Thioredoxin n=2 Tax=Polaribacter TaxID=52959 RepID... [more]
A0A1B1U5P4_9HELI7.550e-1036.14Thioredoxin n=1 Tax=Helicobacter enhydrae TaxID=22... [more]
A0A7L5CE89_9GAMM8.110e-1040.30Thioredoxin n=3 Tax=Francisella TaxID=262 RepID=A0... [more]
A0A7C4UZH4_9ARCH9.920e-1037.04Thioredoxin n=1 Tax=Candidatus Woesearchaeota arch... [more]
A0A2E6PZF8_9EURY1.070e-940.00Thioredoxin n=1 Tax=Euryarchaeota archaeon TaxID=2... [more]
A0A061S1S4_9CHLO2.000e-936.90Thioredoxin-like chloroplastic-like n=1 Tax=Tetras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1397contigH-canaliculatus_F_contig1397:2..1263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.3
Seed ortholog evalue1.2e-61
Seed eggNOG ortholog2880.D7G6A7
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
EggNOG free text desc.protein-disulfide reductase activity
EggNOG OGsKOG0908@1,KOG0908@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-10_001160.1
Exons3
Model size381
Cds size381
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1397.3141.1prot_H-canaliculatus_F_contig1397.3141.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1397 2..1263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929141.8361819-CDS-H-canaliculatus_F_contig1397:1..221622929141.8361819-CDS-H-canaliculatus_F_contig1397:1..22Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 2..22 +
1696845693.27335-CDS-H-canaliculatus_F_contig1397:1..221696845693.27335-CDS-H-canaliculatus_F_contig1397:1..22Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 2..22 +
1622929141.8558567-CDS-H-canaliculatus_F_contig1397:410..6411622929141.8558567-CDS-H-canaliculatus_F_contig1397:410..641Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 411..641 +
1696845693.287962-CDS-H-canaliculatus_F_contig1397:410..6411696845693.287962-CDS-H-canaliculatus_F_contig1397:410..641Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 411..641 +
1622929141.8719256-CDS-H-canaliculatus_F_contig1397:1134..12631622929141.8719256-CDS-H-canaliculatus_F_contig1397:1134..1263Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 1135..1263 +
1696845693.2992826-CDS-H-canaliculatus_F_contig1397:1134..12631696845693.2992826-CDS-H-canaliculatus_F_contig1397:1134..1263Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 1135..1263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1397.3141.1

>prot_H-canaliculatus_F_contig1397.3141.1 ID=prot_H-canaliculatus_F_contig1397.3141.1|Name=mRNA_H-canaliculatus_F_contig1397.3141.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
AQEVIFEITSKEHFDDVVSRAAGADGHEGYHDAQGSWRVPHKLMMVEVHA
GWCRVCKGLQPKLLKLVARHPEVLCCKINKTKNEELAGKLGVRGLPMLIF
YKNGKRVDHHTTANINTIEEAIRDNT*
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mRNA from alignment at H-canaliculatus_F_contig1397:2..1263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1397.3141.1 ID=mRNA_H-canaliculatus_F_contig1397.3141.1|Name=mRNA_H-canaliculatus_F_contig1397.3141.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1262bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1397:2..1263+ (Hapterophycus canaliculatus Oshoro5f female)
GCGCAGGAAGTCATCTTCGAGGTGAGCAGACCCTTCGCTGGGCATGCTTG GTCGAGCTCGCCGTTCACGTTCTTCCGCGTCGTTCTACTCTGTACATTGA TGAACATGTCCTCGGCCACATGTGCCCTCATGAGCAACATGAGCAACAGG GTATCTCCCCCACATTGCAGCCATGTCTGGCATATTCGAACGTATTACGT TGGTTGGCACCCGCACGTCCGAGCTTGTCGTTGTGGCAGTTTTTCCAGTT GAATCTATAAAAAACGTTTGAATGGTTTGCGTTCTTCCCGGCAGTTAAAA AACAGAAGCAGGATCACAGGGTGCCGATCGGGAGTACGCACTCTTAAACA ACACGAAGTTAATTTTTGTAATTATATACTCTGAGAGGTGAACGTCGCTG ACGCTACAGATTACGTCGAAGGAGCACTTTGATGACGTGGTGTCTCGGGC AGCAGGCGCGGATGGACACGAGGGGTACCACGATGCTCAAGGGAGCTGGA GGGTCCCACATAAGCTCATGATGGTGGAAGTCCATGCGGGCTGGTGCCGT GTTTGCAAGGGATTACAACCAAAATTGTTGAAGCTCGTCGCAAGGCATCC GGAGGTCCTCTGCTGCAAGATTAATAAGACGAAGAATGAGGTGAAGGTTG CTGTGAATCTCCATTGCGTACCACAAATAAAGCGGTTGTCAGGTCGGTAC ACTTTGGGCAGGACATGCACCAGTCATCCATCTCCCGGTAGTCGAGAAAC TTGTATCTATGAGCACTCTTCGTTGAGGTAATGAGTTTTTTCCTGCAAGC CGGTCTATGCCTTACCCCCAAAAAAGCGGGCCGTGGTTACGAAATGTGTA ACAAAACATCAAAAACGTCATCGAGGATCCGTCGCTTGAAAATCGGACGG TTGTTGGGGCATGCATCTGCATTTGCACGTGCGAGGGCGCCGGGTCCTCC CACGGTGTTCTTGTTACCGCCCCGTGTGAGAGACGCACGCTCTCGATTTG AACGAGTGAAACGGCAGCAATCGACAGCTTCTCAGATAATTGTTCGCCAA GATCGAGAGTAGCTCATCAAGTTGCGCTCCAAATTTATCCGTACAAACTG CTTTCTTCATTCTCCGATCCATAACCCTGTTAGGAGCTCGCGGGAAAGCT GGGCGTGCGTGGACTACCAATGCTTATCTTCTACAAGAATGGAAAGCGAG TGGATCACCACACAACCGCGAACATCAACACGATAGAGGAGGCTATCAGA GATAATACGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1397:2..1263+

>mRNA_H-canaliculatus_F_contig1397.3141.1 ID=mRNA_H-canaliculatus_F_contig1397.3141.1|Name=mRNA_H-canaliculatus_F_contig1397.3141.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1397:2..1263+ (Hapterophycus canaliculatus Oshoro5f female)
GCGCAGGAAGTCATCTTCGAGGCGCAGGAAGTCATCTTCGAGATTACGTC
GAAGGAGCACTTTGATGACGTGGTGTCTCGGGCAGCAGGCGCGGATGGAC
ACGAGGGGTACCACGATGCTCAAGGGAGCTGGAGGGTCCCACATAAGCTC
ATGATGGTGGAAGTCCATGCGGGCTGGTGCCGTGTTTGCAAGGGATTACA
ACCAAAATTGTTGAAGCTCGTCGCAAGGCATCCGGAGGTCCTCTGCTGCA
AGATTAATAAGACGAAGAATGAGATTACGTCGAAGGAGCACTTTGATGAC
GTGGTGTCTCGGGCAGCAGGCGCGGATGGACACGAGGGGTACCACGATGC
TCAAGGGAGCTGGAGGGTCCCACATAAGCTCATGATGGTGGAAGTCCATG
CGGGCTGGTGCCGTGTTTGCAAGGGATTACAACCAAAATTGTTGAAGCTC
GTCGCAAGGCATCCGGAGGTCCTCTGCTGCAAGATTAATAAGACGAAGAA
TGAGGAGCTCGCGGGAAAGCTGGGCGTGCGTGGACTACCAATGCTTATCT
TCTACAAGAATGGAAAGCGAGTGGATCACCACACAACCGCGAACATCAAC
ACGATAGAGGAGGCTATCAGAGATAATACGTAAGAGCTCGCGGGAAAGCT
GGGCGTGCGTGGACTACCAATGCTTATCTTCTACAAGAATGGAAAGCGAG
TGGATCACCACACAACCGCGAACATCAACACGATAGAGGAGGCTATCAGA
GATAATACGTAA
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