mRNA_H-canaliculatus_F_contig1387.3072.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1387.3072.1 vs. uniprot
Match: A0A6H5L132_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L132_9PHAE) HSP 1 Score: 212 bits (539), Expect = 1.800e-66 Identity = 115/196 (58.67%), Postives = 135/196 (68.88%), Query Frame = 1
Query: 1 RVGDVVERDIDGIWFPAKVLAVHERRFPTDSSGSCSNVWQPRQLAFDLVYLDDQNRESEVPEGDLRVVHDYGSRTKDNLLLLLREEDRSTSRAGEESRLGGGGSIGAGRRKTHTXXXXXXXXXXXSTHYDDRGRDDLVQDSVHSFEHEGPKVTIHSSRGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLRGP 588
RVG+VVERDIDG+WFPAKV+AVHE++ SG ++ + RQLA+DL YLDD NRESEVPE D+RVV+DYG++TK+++LLLL E G +S G S G G K+ + D G+D V D H GPKVTIHSS GTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLRGP
Sbjct: 26 RVGEVVERDIDGVWFPAKVVAVHEKKDEAVPSGGSGSIGRRRQLAYDLFYLDDNNRESEVPEEDIRVVYDYGTKTKESMLLLLGTEHER----GGDSTAARGHSHGGGDSKSLDARQYVEAGANSRSRGQDGGKDGGVHDEDGDG-HAGPKVTIHSSLGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLRGP 216
BLAST of mRNA_H-canaliculatus_F_contig1387.3072.1 vs. uniprot
Match: D8LHB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB0_ECTSI) HSP 1 Score: 157 bits (397), Expect = 6.260e-46 Identity = 94/196 (47.96%), Postives = 105/196 (53.57%), Query Frame = 1
Query: 1 RVGDVVERDIDGIWFPAKVLAVHERRFPTDSSGSCSNVWQPRQLAFDLVYLDDQNRESEVPEGDLRVVHDYGSRTKDNLLLLLREEDRSTSRAGEESRLGGGGSIGAGRRKTHTXXXXXXXXXXXSTHYDDRGRDDLVQDSVHSFEHEGPKVTIHSSRGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLRGP 588
RVG+VVERDIDG+WFPA+V+ VHE+ + SGS ++ +P QLA+DLVYLDD NRESE EG VHD G D G H GPKVTIHSSRGTFDTKEDGSA+AYIINGPETNVAAGSGLRGIRWLRGP
Sbjct: 21 RVGEVVERDIDGVWFPAQVVGVHEKTYEAGRSGSSGSIGRPWQLAYDLVYLDDNNRESEG-EGKDGGVHDEG----------------------------------------------------------DDG-------------HAGPKVTIHSSRGTFDTKEDGSASAYIINGPETNVAAGSGLRGIRWLRGP 144
BLAST of mRNA_H-canaliculatus_F_contig1387.3072.1 vs. uniprot
Match: A0A6S9KAU9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KAU9_HETAK) HSP 1 Score: 86.7 bits (213), Expect = 5.610e-18 Identity = 62/194 (31.96%), Postives = 88/194 (45.36%), Query Frame = 1
Query: 1 RVGDVVERDIDGIWFPAKVLAVHERRFPTDSSGSCSNVWQPRQLAFDLVYLDDQNRESEVPEGDLRVVHDYGSRTKDNLLLLLREEDRSTSRAGEESRLGGGGSIGAGRRKTHTXXXXXXXXXXXSTHYDDRGRDDLVQDSVHSFEHEGPKVTIHSSRGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLR 582
+VG+VVERDIDG W+ AK+++V + F ++ +D+ Y+DD N E VPE +LR T + L +E S +++ AGR + +++ R P+V +H +DG ATAYIINGPE NVA GSGLRGIRWL+
Sbjct: 20 QVGNVVERDIDGEWYAAKIVSVIQDEFD--------------EIIYDVEYVDDGNVEHGVPEDELRT---GDHETLEQALAKADDEGNSDNQSK------------AGRPREAPRPLGGALFPTRGEEEEEKRRQ------------AAPRVVVHG------LAQDGEATAYIINGPENNVATGSGLRGIRWLK 166
BLAST of mRNA_H-canaliculatus_F_contig1387.3072.1 vs. uniprot
Match: A0A835Z3A3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A3_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 3.300e-10 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 448 PKVTIHSSRGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLRG 585
P VT H+S D ++DG A AYIINGP+TN+AAGSGLR +RWLRG
Sbjct: 148 PTVTYHTS-AAHDNRDDGQAGAYIINGPDTNIAAGSGLRALRWLRG 192
BLAST of mRNA_H-canaliculatus_F_contig1387.3072.1 vs. uniprot
Match: A0A485KQE5_9STRA (Aste57867_10453 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQE5_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.080e-9 Identity = 56/189 (29.63%), Postives = 78/189 (41.27%), Query Frame = 1
Query: 16 VERDIDGIWFPAKVLAVHERRFPTDSSGSCSNVWQPRQLAFDLVYLDDQNRESEVPEGDLRVVHDYGSRTKDNLLLLLREEDRSTSRAGEESRLGGGGSIGAGRRKTHTXXXXXXXXXXXSTHYDDRGRDDLVQDSVHSFEHEGPKVTIHSSRGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLR 582
VERDIDG+WFPA++LA H+ +D+ Y +D E +P +LR R+ R+ ++A G S A R++ L+Q ++ P V +H+ E +A YIING ETNVAAG+GLRGIRWLR
Sbjct: 39 VERDIDGLWFPARILADHD------------------DGTYDVQYDEDHKIEEHIPACELR----------------RRDHARNENQAPPRCYTSHGRSDDALLRESSL----------------------LMQSDYDP--NKAPTVVVHNKG------EATAANGYIINGLETNVAAGNGLRGIRWLR 163
BLAST of mRNA_H-canaliculatus_F_contig1387.3072.1 vs. uniprot
Match: A0A2D4BRW4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRW4_PYTIN) HSP 1 Score: 54.7 bits (130), Expect = 2.650e-5 Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 400 RDDLVQDSVHSFEHEGPKVTIHSSRGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLR 582
RD L+ ++ P V +H RG + D +A+AYIING E N+AAG+GLRGIRWLR
Sbjct: 908 RDSLLLQPSDXDPNKAPTVVLHH-RG----ESDAAASAYIINGLENNIAAGNGLRGIRWLR 963
BLAST of mRNA_H-canaliculatus_F_contig1387.3072.1 vs. uniprot
Match: A0A8K1FRW7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRW7_PYTOL) HSP 1 Score: 52.0 bits (123), Expect = 5.730e-5 Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 400 RDDLVQDSVHSFEHEGPKVTIHSSRGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLR 582
RD L+ + ++ P V +H T +A+AYIING E N+AAG+GLRGIRWLR
Sbjct: 114 RDSLLLQTSDYDPNKAPTVVLHHRGETH-----AAASAYIINGLENNIAAGNGLRGIRWLR 169
BLAST of mRNA_H-canaliculatus_F_contig1387.3072.1 vs. uniprot
Match: W4FSG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSG6_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 6.150e-5 Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 1
Query: 448 PKVTIHSSRGTFDTKEDGSATAYIINGPETNVAAGSGLRGIRWLR 582
P V +H+ E +A YIING ETNVAAG+GLRGIRWLR
Sbjct: 115 PTVVVHNKG------EATAANGYIINGIETNVAAGNGLRGIRWLR 153 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1387.3072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1387.3072.1 >prot_H-canaliculatus_F_contig1387.3072.1 ID=prot_H-canaliculatus_F_contig1387.3072.1|Name=mRNA_H-canaliculatus_F_contig1387.3072.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp RVGDVVERDIDGIWFPAKVLAVHERRFPTDSSGSCSNVWQPRQLAFDLVYback to top mRNA from alignment at H-canaliculatus_F_contig1387:12339..14643+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1387.3072.1 ID=mRNA_H-canaliculatus_F_contig1387.3072.1|Name=mRNA_H-canaliculatus_F_contig1387.3072.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2305bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1387:12339..14643+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1387:12339..14643+ >mRNA_H-canaliculatus_F_contig1387.3072.1 ID=mRNA_H-canaliculatus_F_contig1387.3072.1|Name=mRNA_H-canaliculatus_F_contig1387.3072.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1387:12339..14643+ (Hapterophycus canaliculatus Oshoro5f female)back to top |