mRNA_H-canaliculatus_F_contig13752.2996.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13752.2996.1
Unique NamemRNA_H-canaliculatus_F_contig13752.2996.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: D7FHI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 7.580e-29
Identity = 59/94 (62.77%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    4 VSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDSNGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDG-DVFSVGGSID 282
            + +ADLDGD +LDL+V SYW D+VRWY+NEDGKG FSEA D+++   GAG + VGDLDGDG  DVVVA     Q+TWF NLDG   FSVG  ID
Sbjct:  104 IFAADLDGDEDLDLLVGSYWNDWVRWYENEDGKGAFSEAMDVASGYGGAGSIDVGDLDGDGSPDVVVAFQTSFQLTWFSNLDGLGEFSVGTDID 197          
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: D7FHI7_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.280e-24
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    4 VSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDSNGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDG-DVFSVGGSID 282
            V +ADLD DG+LDL+V +Y  D+VRWY+NEDGKGTFSEA D+++   GA  + VGDL+GDG  DVVVA     Q+TWF NL G   FSVG  ID
Sbjct:   65 VFAADLDDDGDLDLLVGTYVEDWVRWYENEDGKGTFSEAVDVASGYGGAASIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLYGLGEFSVGADID 158          
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: A0A1F3PQL1_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3PQL1_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 3.550e-19
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    4 VSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDSNGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDGD 255
            + SAD+DGDG++D++  S+  D + WY+N DG GTF     I+TD+NGA  +   D+DGDG +DV+ A S D++I W+ N DG+
Sbjct:  349 ICSADIDGDGDMDVLSASFHDDKIAWYENTDGSGTFGTQQSITTDANGARDVCCADIDGDGDMDVLSASSTDDKIAWYENTDGN 432          
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: A0A4P7PTH1_9FLAO (Por_Secre_tail domain-containing protein n=1 Tax=Flavobacterium sangjuense TaxID=2518177 RepID=A0A4P7PTH1_9FLAO)

HSP 1 Score: 91.7 bits (226), Expect = 5.010e-19
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    4 VSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADI-STDSNGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDG 252
            V++ DLDGDG+ D+V  SYW D + W++N DG+G +     I ST  NGA  + +GD++GDGF DV+    LDN + WFRN DG
Sbjct:  391 VAADDLDGDGDKDIVAASYWDDKISWFRNLDGQGNYYNTQTILSTALNGASSVFIGDVNGDGFKDVLATAYLDNDVVWFRNTDG 474          
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: A0A1W9LJS4_9DELT (Cadherin_4 domain-containing protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9LJS4_9DELT)

HSP 1 Score: 91.3 bits (225), Expect = 6.770e-19
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    4 VSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDSNGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDG 252
            V +AD+DGDG++D+V  S W + + WY+N DGKG F     ISTD+N A  +  GD+DGDG  DVV A + DN+I W+ N DG
Sbjct:  340 VFAADVDGDGDIDVVSASAWDNKIAWYENTDGKGNFGSQKIISTDANWALSVFAGDIDGDGDADVVSASANDNKIAWYENTDG 422          
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: UPI0013D69919 (FG-GAP-like repeat-containing protein n=1 Tax=Spartinivicinus ruber TaxID=2683272 RepID=UPI0013D69919)

HSP 1 Score: 90.1 bits (222), Expect = 1.740e-18
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   10 SADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDSNGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDG 252
            +AD+DGDG+LD+V  S   D + W++N DG GTF     IS   +GA  + +GD+DGDG LDVV A +LD+ I WF N DG
Sbjct:  603 AADIDGDGDLDVVTASNLDDTIAWFENTDGLGTFGPENTISNTQDGAENVTIGDVDGDGDLDVVTASTLDDTIAWFENTDG 683          
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: A0A6H5K481_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K481_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.880e-18
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    4 VSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDSNGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDGD-VFSVG 270
            V  AD+DGDG+ D++  S + D V WY+N DG+GTF+   DIS  S+GA      D+DGD  +D+VVA   D+++TWF+N DG   F++G
Sbjct:  158 VKCADVDGDGDFDIISVSSFDDRVTWYENTDGEGTFAVGLDISATSSGADMAVAADIDGDEAVDIVVASFDDDRVTWFKNTDGKGAFALG 247          
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: A0A5C6YYM0_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Aequorivita antarctica TaxID=153266 RepID=A0A5C6YYM0_9FLAO)

HSP 1 Score: 89.0 bits (219), Expect = 4.390e-18
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 FVSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDSNGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDGD 255
            +V +AD+DGDG++D++    + D V WYKN DG G F     IS++ +GAG +  GD+DGDG LDV+ +   D   +WF+N+DG+
Sbjct:  492 WVYAADIDGDGDMDVLSAEPYNDTVNWYKNLDGLGNFGSRQTISSNLDGAGSVVAGDIDGDGDLDVLTSSRFDKTFSWFKNMDGN 576          
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: UPI002004C737 (T9SS type A sorting domain-containing protein n=1 Tax=Subsaxibacter sp. CAU 1640 TaxID=2933271 RepID=UPI002004C737)

HSP 1 Score: 88.2 bits (217), Expect = 8.180e-18
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    4 VSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDS-NGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDG 252
            V + D+DGDG+ D+V  SYW D + WY+N DG+G F     I   + NGA  + VGD+DGDGF DV+    LD ++ W++NLDG
Sbjct:  392 VYADDIDGDGDKDIVAASYWDDKISWYENLDGQGNFYNTQKIIASTLNGATSVHVGDVDGDGFNDVLATSYLDYEVVWYKNLDG 475          
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Match: UPI00156A8EF3 (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella undariae TaxID=1285465 RepID=UPI00156A8EF3)

HSP 1 Score: 88.2 bits (217), Expect = 8.190e-18
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    4 VSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDSNGAGRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDGD 255
            V SADLDGDG++D++  SY  D + WYKN DG+G FS    I+T+++ A  + V D+DGDG +DV+ A   D++I W+ NLDG+
Sbjct:   92 VFSADLDGDGDMDILSASYNDDKIAWYKNLDGEGQFSSEIIITTNADNARSVYVSDVDGDGDMDVMSASRNDDKIAWYENLDGE 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13752.2996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHI8_ECTSI7.580e-2962.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHI7_ECTSI1.280e-2459.57N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A1F3PQL1_9BACT3.550e-1946.43Por_Secre_tail domain-containing protein n=2 Tax=B... [more]
A0A4P7PTH1_9FLAO5.010e-1948.81Por_Secre_tail domain-containing protein n=1 Tax=F... [more]
A0A1W9LJS4_9DELT6.770e-1950.60Cadherin_4 domain-containing protein (Fragment) n=... [more]
UPI0013D699191.740e-1850.62FG-GAP-like repeat-containing protein n=1 Tax=Spar... [more]
A0A6H5K481_9PHAE2.880e-1846.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5C6YYM0_9FLAO4.390e-1844.71T9SS type A sorting domain-containing protein n=1 ... [more]
UPI002004C7378.180e-1847.62T9SS type A sorting domain-containing protein n=1 ... [more]
UPI00156A8EF38.190e-1848.81T9SS type A sorting domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13752contigH-canaliculatus_F_contig13752:232..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue7.1e-25
Seed eggNOG ortholog2880.D7FHI8
EggNOG free text desc.Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
EggNOG OGs29QRV@1,2RX97@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929115.3532522-CDS-H-canaliculatus_F_contig13752:231..4571622929115.3532522-CDS-H-canaliculatus_F_contig13752:231..457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13752 232..457 -
1696845684.7740777-CDS-H-canaliculatus_F_contig13752:231..4571696845684.7740777-CDS-H-canaliculatus_F_contig13752:231..457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13752 232..457 -
1622929115.3708827-CDS-H-canaliculatus_F_contig13752:1059..12111622929115.3708827-CDS-H-canaliculatus_F_contig13752:1059..1211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13752 1060..1211 -
1696845684.7878034-CDS-H-canaliculatus_F_contig13752:1059..12111696845684.7878034-CDS-H-canaliculatus_F_contig13752:1059..1211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13752 1060..1211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13752.2996.1prot_H-canaliculatus_F_contig13752.2996.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13752 232..1211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13752.2996.1

>prot_H-canaliculatus_F_contig13752.2996.1 ID=prot_H-canaliculatus_F_contig13752.2996.1|Name=mRNA_H-canaliculatus_F_contig13752.2996.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
FVSSADLDGDGNLDLVVCSYWGDFVRWYKNEDGKGTFSEAADISTDSNGA
GRLAVGDLDGDGFLDVVVARSLDNQITWFRNLDGDVFSVGGSIDAAGPTD
VAVADVDGDGNLDVIFTSNGGGELT*
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mRNA from alignment at H-canaliculatus_F_contig13752:232..1211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13752.2996.1 ID=mRNA_H-canaliculatus_F_contig13752.2996.1|Name=mRNA_H-canaliculatus_F_contig13752.2996.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=980bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13752:232..1211- (Hapterophycus canaliculatus Oshoro5f female)
TTTGTGTCTTCGGCGGACCTAGACGGTGACGGGAACCTGGATTTAGTTGT GTGCTCTTATTGGGGCGATTTTGTGAGATGGTACAAGAACGAGGACGGGA AGGGTACGTTTTCGGAGGCAGCCGATATCTCCACGGACAGCAATGGAGCA GGGTGAGGCAGCACCGCCCCGAACCACGTTTGTTCCCAAACATGCTTCAT TGTCGTGCCCATTCCGTGCGACGGCAATCTTCGTGACCGTGGATGTATAT CGCTGTGTCTGGCCTGACGAGCATGATGACTCGCTCAATATCGGAAAGGA CAAAACTACGGTTTTTCACACATCAGGCAGGCAAGTTGCGGCAAGCAGTG CGCCTTGAGGCTGGACACATGGAAGGGACCCCACGATCCCACCAAACTCC GTCCGTTGCTACACAAACTACATACGAAGTACAAGGTCGGACCACCACCT CGTGGGCGATATCTGACCTCGTGATTTGCGTCGCCTGCAGCCACTCTCCC GTACTACCTTCGTATGGGGGCTATGTCTTGAGACCTGGCTGCTGAACATG ATGAGCACCATCCCACGTTGTACCAAAAAAACAGCTTTCCATGCTGGGAC CAATGACGATATATTCCACCCTACTCGCAGTTATGTATCGATGGTACACT TCGATCCTGGGATCGGGAAACTGGGACAAGACGTGAATCTCATCGATTTT CGCGCAACACCCTCCGGCCTTGCACTGTCATTTTCCGGTTATTAAACATT CAAGGCGGCTTGCCGTCGGAGACCTCGACGGCGACGGATTCCTTGACGTG GTGGTGGCGCGCAGTTTGGACAATCAAATCACGTGGTTCCGGAACCTCGA TGGTGACGTGTTCTCGGTCGGTGGTAGCATTGACGCGGCGGGCCCTACAG ACGTCGCGGTGGCCGATGTGGACGGAGACGGGAACTTGGACGTGATTTTC ACTTCAAATGGTGGTGGTGAGCTCACTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13752:232..1211-

>mRNA_H-canaliculatus_F_contig13752.2996.1 ID=mRNA_H-canaliculatus_F_contig13752.2996.1|Name=mRNA_H-canaliculatus_F_contig13752.2996.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13752:232..1211- (Hapterophycus canaliculatus Oshoro5f female)
TTTGTGTCTTCGGCGGACCTAGACGGTGACGGGAACCTGGATTTAGTTGT
GTGCTCTTATTGGGGCGATTTTGTGAGATGGTACAAGAACGAGGACGGGA
AGGGTACGTTTTCGGAGGCAGCCGATATCTCCACGGACAGCAATGGAGCA
GGTTTGTGTCTTCGGCGGACCTAGACGGTGACGGGAACCTGGATTTAGTT
GTGTGCTCTTATTGGGGCGATTTTGTGAGATGGTACAAGAACGAGGACGG
GAAGGGTACGTTTTCGGAGGCAGCCGATATCTCCACGGACAGCAATGGAG
CAGGGCGGCTTGCCGTCGGAGACCTCGACGGCGACGGATTCCTTGACGTG
GTGGTGGCGCGCAGTTTGGACAATCAAATCACGTGGTTCCGGAACCTCGA
TGGTGACGTGTTCTCGGTCGGTGGTAGCATTGACGCGGCGGGCCCTACAG
ACGTCGCGGTGGCCGATGTGGACGGAGACGGGAACTTGGACGTGATTTTC
ACTTCAAATGGTGGTGGTGAGCTCACTTAGGCGGCTTGCCGTCGGAGACC
TCGACGGCGACGGATTCCTTGACGTGGTGGTGGCGCGCAGTTTGGACAAT
CAAATCACGTGGTTCCGGAACCTCGATGGTGACGTGTTCTCGGTCGGTGG
TAGCATTGACGCGGCGGGCCCTACAGACGTCGCGGTGGCCGATGTGGACG
GAGACGGGAACTTGGACGTGATTTTCACTTCAAATGGTGGTGGTGAGCTC
ACTTAG
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