mRNA_H-canaliculatus_F_contig13289.2686.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13289.2686.1
Unique NamemRNA_H-canaliculatus_F_contig13289.2686.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 4.630e-98
Identity = 188/277 (67.87%), Postives = 207/277 (74.73%), Query Frame = 1
Query:    1 QVQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXX----------ASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRFLQ 801
            +VQQAIVVLMD+TLRELRGAAPSLDS++LTVESCIF+SFDR          +A RQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGE+SKAAAVRDPPLWIGT+AA+RLFVTAK+R+YKIVPR+ A GA  G R +        XXXXXXXXXX            YE+KLVLEENAKW LA+DVMKEIRDLHA R+R                            PAGGARVLVLV+D+ T TQLRQHSALGGP MMK+RFLQ
Sbjct:  339 EVQQAIVVLMDHTLRELRGAAPSLDSSELTVESCIFNSFDR----------SAQRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGEKSKAAAVRDPPLWIGTSAADRLFVTAKARVYKIVPRNGAGGAAHGPRNSXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEYEVKLVLEENAKWRLAADVMKEIRDLHAARERQRVVSKPPVPAASPAAAE----------PAGGARVLVLVRDEQTCTQLRQHSALGGPAMMKRRFLQ 595          
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 1.610e-86
Identity = 165/267 (61.80%), Postives = 178/267 (66.67%), Query Frame = 1
Query:    1 QVQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRFLQ 801
            +VQQAIVVLMD+TLRELRGAAPSLDSA+LTVESCIF+SFDR          +A RQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGE+SKAAAVRDPPLWIGT+AA+RLFVTAK                                            +KLVLEENAKW LA+DVMKEIRDLHA RQR                            PAGGARVLVLVKD+ T TQLR+HSA GGP MMK+RFLQ
Sbjct:  354 EVQQAIVVLMDHTLRELRGAAPSLDSAELTVESCIFNSFDR----------SAQRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGEKSKAAAVRDPPLWIGTSAADRLFVTAK--------------------------------------------VKLVLEENAKWRLAADVMKEIRDLHAARQRQRVVSKSPVPAESSAVVE----------PAGGARVLVLVKDEQTCTQLREHSAFGGPAMMKRRFLQ 556          
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: W2QZG5_PHYPN (ERCC4 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QZG5_PHYPN)

HSP 1 Score: 143 bits (361), Expect = 4.230e-35
Identity = 93/265 (35.09%), Postives = 139/265 (52.45%), Query Frame = 1
Query:    4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRD-LHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
            +Q+A++V ++ T++EL+ +  SLD+A LT++  +  SF           +   RQL+P WH++  KTKQL+ DL TLR LL Y+ RYDAI++Y  L+  ++     R P  W+ T AA+RL   AK R+Y+IV            + N P+++              + ELKLVLE+N KW    D +KEI D +HA +++                             AGGA VLV+VKD+ T  QLR+  +LG   MM++RF
Sbjct:  238 MQEALLVALEATVKELQRSTKSLDAADLTMDKALAKSFS----------SFIRRQLDPLWHKLPVKTKQLVGDLSTLRQLLAYLPRYDAISYYSFLVNYQTMNGQQRFPSPWLFTDAADRLLTAAKERLYQIVDP----------KTNTPVNLRQLSSNGSGSNAAENAELKLVLEQNPKW----DALKEILDEVHAEQKKKMKQNMDKLA-------------------AGGATVLVMVKDERTCAQLREFLSLGAQEMMRRRF 459          
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A0W8CQU8_PHYNI (DNA repair endonuclease XPF n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CQU8_PHYNI)

HSP 1 Score: 143 bits (361), Expect = 4.480e-35
Identity = 93/265 (35.09%), Postives = 139/265 (52.45%), Query Frame = 1
Query:    4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRD-LHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
            +Q+A++V ++ T++EL+ +  SLD+A LT++  +  SF           +   RQL+P WH++  KTKQL+ DL TLR LL Y+ RYDAI++Y  L+  ++     R P  W+ T AA+RL   AK R+Y+IV            + N P+++              + ELKLVLE+N KW    D +KEI D +HA +++                             AGGA VLV+VKD+ T  QLR+  +LG   MM++RF
Sbjct:  518 MQEALLVALEATVKELQRSTKSLDAADLTMDKALAKSFS----------SFIRRQLDPLWHKLPVKTKQLVGDLSTLRQLLAYLPRYDAISYYSFLVNYQTMNGQQRFPSPWLFTDAADRLLTAAKERLYQIVDP----------KTNTPVNLRQLSSNGSGSNAAENAELKLVLEQNPKW----DALKEILDEVHAEQKKKMKQNMDKLA-------------------AGGATVLVMVKDERTCAQLREFLSLGAQEMMRRRF 739          
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A0P1AUF2_PLAHL (Dna repair endonuclease xpf n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUF2_PLAHL)

HSP 1 Score: 140 bits (354), Expect = 3.620e-34
Identity = 88/264 (33.33%), Postives = 138/264 (52.27%), Query Frame = 1
Query:    4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
            +Q+A++V ++ T++EL+ +  SLD+A LT++  +  SF               RQL+P WH++ FKTKQL+ DL TLR LL Y+ RYDAI+++  L+  ++  +  R P  W+ T AA+RL   AK R+Y+IV  D  +  +   R+    + +G            + ELKLVLE N KW    +++ E+ +   T ++                             AGGA VL++VKD+ T  QLR+  +LG   MM++RF
Sbjct:  235 MQEALLVALEATIKELQRSTKSLDAADLTMDKALAKSFSN----------FIRRQLDPLWHKLPFKTKQLVGDLSTLRQLLAYLPRYDAISYFSFLMSYQTMNSQQRFPSPWLFTDAADRLLTAAKERLYQIV--DYKTKKVVNPRRLTCSNKSGSESVD-------NAELKLVLEHNPKWDALHEILDEVHEKQQTMRKQNFGQGA----------------------AGGASVLIMVKDERTCAQLREFLSLGAQEMMRRRF 457          
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A225WL88_9STRA (DNA repair endonuclease n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225WL88_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.180e-34
Identity = 91/270 (33.70%), Postives = 135/270 (50.00%), Query Frame = 1
Query:    4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIV------PRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
            +Q+A++V ++ T++EL+ +  SLD+A LT++  +  SF           +   RQL+P WH++  KTKQL+ DL TLR LL Y+ RYDAI++Y  L+  ++     R P  W+ T AA+RL   AK R+Y++V      P +      S G K A                  + ELKLVLE+N KW    +++ E+ D    +Q                              AGGA VLV+VK++ T  QLR+  ALG   MM++RF
Sbjct:  485 MQEALLVALEATVKELQRSTKSLDAADLTMDKALAKSFS----------SFIRRQLDPLWHKLPAKTKQLVGDLSTLRQLLAYLPRYDAISYYSFLMSYQTMNGQQRFPSPWLFTDAADRLLTAAKERLYQLVDSTTQKPVNLRQIGSSNGGKTAD-----------------NVELKLVLEQNPKWDALKEILDEVHDEQKKKQNKEKMA------------------------AGGANVLVMVKEERTCAQLREFLALGAQEMMRRRF 703          
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A662X8F6_9STRA (ERCC4 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X8F6_9STRA)

HSP 1 Score: 140 bits (352), Expect = 6.870e-34
Identity = 99/267 (37.08%), Postives = 147/267 (55.06%), Query Frame = 1
Query:    4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDV---AGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
            +Q+A++V ++ T++EL+ +  +LD+A LT+E  +  SF           ++  RQL+P WH+V  KTKQL+ DL TLR LL Y+ RYDAI++Y  L+  ++     R P  W+ T AA+RL   AK R+Y++V R          +  API++   A             + ELKLVLE+N KW    ++++E++        XXXXXXXXXXX                   GGA +LV+VKD+ T  QLR+  +LG   MM++RF
Sbjct:  323 MQEALLVALEATVKELQRSTKALDAADLTMEKALAKSFS----------SSIRRQLDPLWHKVPVKTKQLVGDLSTLRQLLVYLPRYDAISYYCFLVNHQTMNGQQRFPSPWLFTEAADRLLTAAKERLYQVVDR----------QTKAPINLRRFASSSSSGTAARSTETVELKLVLEQNPKWTALKEIIEEVQQXXXXXXXXXXXXXXXXXX-------------------GGASILVMVKDERTCAQLREFLSLGAQEMMRRRF 550          
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A6G0KZF6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0KZF6_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.800e-33
Identity = 104/273 (38.10%), Postives = 148/273 (54.21%), Query Frame = 1
Query:    4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIV---------PRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
            +Q+A++V ++ T++EL+ +  SLD+A LT++  +  SF           +   RQL+P WH++  KTKQL+ DL TLR LL Y+ RYDAI++Y  L+  ++     R P  W+ T AA+RL   AK RIY++V         PR  A+ +      NA +D A               ELKLVLE+N KW    +++ E+ D                    XXXXXXXXXXXX    AGGA +LV+VKD+ T  QLR+  +LG   MM++RF
Sbjct:  244 MQEALLVALEATVKELQRSTKSLDAADLTMDKALARSFS----------SFIRRQLDPLWHKLPVKTKQLVGDLATLRQLLAYIPRYDAISYYSFLVNYQTMNGQQRFPSPWLFTDAADRLLTAAKERIYQVVDSTTKKPVNPRQFAANS------NA-VDRA---------------ELKLVLEQNPKWDALKEILDEVHD------------------EQXXXXXXXXXXXXDKLAAGGASILVMVKDERTCAQLREFLSLGAQEMMRRRF 466          
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A836CHZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.220e-33
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 1
Query:    4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAV------RDPPLWIGTAAAERLFVTAKSRIYKIVPRDKAS 420
            VQQA+ V MD  LRELR  AP+LD A+LTVE+ +F +FD          A+  RQL+PEWHRV  +T+QL+ DL TLR LLDY+FRYD +TFY  L   R+ +AA         P +W+   AA+RLF  AK+R+Y++V  DKA+
Sbjct:  224 VQQAVAVTMDVCLRELRRRAPALDVAELTVENGLFEAFD----------ASLRRQLDPEWHRVRPETRQLVADLSTLRKLLDYLFRYDCVTFYGFLQAVRAASAAGGRXXGGSAPSMWLSMDAADRLFEQAKARVYRVVATDKAA 358          
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A3F2S0Q9_9STRA (ERCC4 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S0Q9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 7.960e-33
Identity = 89/264 (33.71%), Postives = 138/264 (52.27%), Query Frame = 1
Query:    4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
            +Q+A++V ++ T++EL+ +  SLD+A LT++  +  SF               RQL+P WH++  KTKQL+ DL TL  LL Y+ RYDAI++Y  L+  ++     R P  W+ T AA+RL   AK R+Y+IV   K    I+  R  +  D +             + ELKLV+E++ KW    +V+ E+   +A +QR                             AGGARV+V++KD+ T  Q+R+  +LGG  MM++RF
Sbjct:  319 MQEALLVALEATVKELQRSTKSLDAADLTMDKALAKSFSN----------FIRRQLDPLWHKLPVKTKQLVGDLSTLHQLLAYLPRYDAISYYSFLVNYQTMNGQQRFPSPWLFTDAADRLLTAAKERLYQIVD-SKTKQPINIRRFPSSSDASAAD----------NAELKLVMEQSPKWKALKEVLDEV---YAEKQRERSKTTKQDQDQIA---------------AGGARVVVMIKDERTCAQVREFLSLGGQEMMRRRF 543          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEA6_9PHAE4.630e-9867.87ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FH45_ECTSI1.610e-8661.80ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
W2QZG5_PHYPN4.230e-3535.09ERCC4 domain-containing protein n=10 Tax=Phytophth... [more]
A0A0W8CQU8_PHYNI4.480e-3535.09DNA repair endonuclease XPF n=1 Tax=Phytophthora n... [more]
A0A0P1AUF2_PLAHL3.620e-3433.33Dna repair endonuclease xpf n=1 Tax=Plasmopara hal... [more]
A0A225WL88_9STRA5.180e-3433.70DNA repair endonuclease n=3 Tax=Phytophthora TaxID... [more]
A0A662X8F6_9STRA6.870e-3437.08ERCC4 domain-containing protein n=2 Tax=Nothophyto... [more]
A0A6G0KZF6_9STRA2.800e-3338.10Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A836CHZ1_9STRA3.220e-3349.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3F2S0Q9_9STRA7.960e-3333.71ERCC4 domain-containing protein n=3 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13289contigH-canaliculatus_F_contig13289:517..3139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.5
Seed ortholog evalue1e-70
Seed eggNOG ortholog2880.D7FH45
Preferred nameRAD1
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000280,GO:0000710,GO:0000712,GO:0000724,GO:0000725,GO:0000726,GO:0000735,GO:0000736,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006289,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045002,GO:0045132,GO:0045165,GO:0046483,GO:0048285,GO:0048869,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:1990599
EggNOG free text desc.resolution of meiotic recombination intermediates
EggNOG OGsCOG1948@1,KOG0442@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size804
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13289.2686.1prot_H-canaliculatus_F_contig13289.2686.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13289 544..3139 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929066.0026064-UTR-H-canaliculatus_F_contig13289:516..5431622929066.0026064-UTR-H-canaliculatus_F_contig13289:516..543Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13289 517..543 +
1696845666.6999326-UTR-H-canaliculatus_F_contig13289:516..5431696845666.6999326-UTR-H-canaliculatus_F_contig13289:516..543Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13289 517..543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929066.0162716-CDS-H-canaliculatus_F_contig13289:543..6781622929066.0162716-CDS-H-canaliculatus_F_contig13289:543..678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13289 544..678 +
1696845666.7158542-CDS-H-canaliculatus_F_contig13289:543..6781696845666.7158542-CDS-H-canaliculatus_F_contig13289:543..678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13289 544..678 +
1622929066.0287952-CDS-H-canaliculatus_F_contig13289:1467..15151622929066.0287952-CDS-H-canaliculatus_F_contig13289:1467..1515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13289 1468..1515 +
1696845666.725627-CDS-H-canaliculatus_F_contig13289:1467..15151696845666.725627-CDS-H-canaliculatus_F_contig13289:1467..1515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13289 1468..1515 +
1622929066.042638-CDS-H-canaliculatus_F_contig13289:2120..22721622929066.042638-CDS-H-canaliculatus_F_contig13289:2120..2272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13289 2121..2272 +
1696845666.7374737-CDS-H-canaliculatus_F_contig13289:2120..22721696845666.7374737-CDS-H-canaliculatus_F_contig13289:2120..2272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13289 2121..2272 +
1622929066.0570939-CDS-H-canaliculatus_F_contig13289:2697..31391622929066.0570939-CDS-H-canaliculatus_F_contig13289:2697..3139Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13289 2698..3139 +
1696845666.752891-CDS-H-canaliculatus_F_contig13289:2697..31391696845666.752891-CDS-H-canaliculatus_F_contig13289:2697..3139Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13289 2698..3139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13289.2686.1

>prot_H-canaliculatus_F_contig13289.2686.1 ID=prot_H-canaliculatus_F_contig13289.2686.1|Name=mRNA_H-canaliculatus_F_contig13289.2686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=259bp
MDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEP
EWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRD
PPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGGS
GSGGGGGAASYELKLVLEENAKWHLASDVMKEIRDLHATRQRRAAAAAAA
ASSSRDGSGGTAAAAAAAVEPAGGARVLVLVKDDHTGTQLRQHSALGGPP
MMKKRFLQ*
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mRNA from alignment at H-canaliculatus_F_contig13289:517..3139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13289.2686.1 ID=mRNA_H-canaliculatus_F_contig13289.2686.1|Name=mRNA_H-canaliculatus_F_contig13289.2686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2623bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13289:517..3139+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGCAGCAGGCGATCGTGGTCCTGATGGACAACACGCTGCGGGAGCT GAGAGGGGCGGCCCCGTCTCTCGACAGCGCTCAGCTTACGGTGGAGAGCT GCATCTTCCACTCCTTCGACAGGCGAGGCGCTGGCACCGCGCTGGATTTT GCTGCTGCTTCCGTCGTTGTTGTTTTTGTCATTCCTGTTGCTCCGTTATT CCTGTAGTTGTTGTTGTTGGTGTTGTTGCTGTTGGTGGTGGTGATGGTGT TGTTTGTGTTGTTGTTTTTGCTGGTGCTACTGCTGTTGCTGCTGGTACTG GTGCTGATGCTGCTGGTGCTGGCGCTGGCGCTGATCCTACTGTTGTTGCT GTTGTTGCTGTTGGTGGTTGCTGGTTGCTGGTTGCTCGCTGCTCGTTGCT GTTGCTGTTGCCGATGCTGCTGGTGTTTTTGTTGCTGCTGCTGTCGCTTT CGGAAGTATGAAAACCAGGCTTGGCGGGCCTCCACGGTTTCGTTGCGAAT CGGCAGTACGACCAACAACGCGCCCTTGCTGATGCCGACACCGCTAGATC TACAATTAAGGCATCGAGCCGTCTCGGGCTACCTAAATAGACCCCAAGGG TGAATAGCATTGATATCCACCAACACCATTGAAACCCAACAGCACCTTTG ACATCCATCAGCACCATTGACATCCACCACCACCGAGGTTGGTTCGCTAG CGCCAAGACAGCTAACGTATCGATAGATAGACTCGGGGTTCTGATGCTGC CGAAGCTCAAGCGCCGATGGCTGGTGCTGGCACCGATAGATGTGTAGAGC ACGGCCGCGGACGATGTCCACGGCATGGATGCCGGCGGGCGAGGCTCAAT GGATGCCACCGATCGCTGACGAGGCTAGACGCGACGGCGTGCCGGCGCCG ACGGTGATACGCGTACAACAATGTGTGTATGCCTCGCGCAGGTCGGTGAA GCGCCAGCTGGAGCCGGAGTGGCACCGCGTGGGTTTCAAGACCAAGCAGG TAGGCGTGAACGCACCTGCACAGGGCGTGCATGCGAAACCGTAGCCTCGG TGTGTGCTCAGTGCTGGTGTGGGTTTCGAGACGAAGCAGGCAGGCGTACG CGCGAAACCGTCGAAACCGCACAGTAGGCTCGGTGTGTGTTCAGTACTGC TGTGGGTTTCGAGGCGGAGCAGGCAGGCGTACGCGCGAAACCGTCGAAAC CGTCGCCTCCATGGGTGTTCAGTGCTGCTGTGGGTTTCGAGACGAAGCAG GCAGGCGTACGCGCGAAACCGTCGAAACCGTCGCCTCCATGGATGTTCAG TGCTGCTGTGGGTTTCGAGACGGAGGAGGTGCATGGATGCAAACGCGAGG CGTATCACGCGCAACCGCCCTCCGCGTGTGGGCACCATCGCACCGCGTGG GTTTCAAGTCCAAGCAGGGAGGCGTGAAAGCGCCGCGTGTCGAAGGAAAC CGTCCCCGGTGTGCACGCACCGTGTGAGAGAGCATGAAGATACCGCGTAC CCCCCTTCTCCCGTCCCTTCCCCATGAGCTCACCTCCACAACCACGTACC ACCACTATCCGAGCGGTCAACCCTAACTGTTTGCATCCGCCGTCGCCCCC GCAGCTGCTGCAAGACCTCAAGACCCTGCGGTCCCTGCTCGACTACGTTT TCCGATACGACGCCATCACCTTCTACCAACTCCTGCTGGGAGAGAGAAGC AAGGCGGCGGCCGTGAGAGACCCGCCCCTGTGGATCGGGACCGCCGCCGC AGAGAGGTGTTTGATTGTTCCTGCCGTGGTGGTGGTGTTGCTCGTCTGTT TTCGTGGCCGTGTTGTGGTCGTGCTTGCTTGCTGCTGCGGTGGGTAAGGT GGTGGCATTGGAGCTTAGGGTGGTAGGGGCGGCCTTGCTTCGCAGCCGTT GCGGCCCTTTCCTTTTTAAAGAAAACATAACAACACCGTTAGAACACCTC CTGAGGTGCGTCGTGTTTCCTTTTACCAGACTTCCTTGGCCCCACGGCTC GCCGGCTCGCAGCACGTGGGCCCAACACAACATCGACGAATCCGGCCTCC CCCCTTCGGAAAATTCCCCATCCCGCCTTTCAAAAGCAAGAACAATCAGG TGGTACTGGCTCTTGAAACCCCCGCATGTTCTCATCCGCGTGCCCCCCCA CCCCACCCCCGCCCCCCGTCGGGTGTGACAGGCTTTTCGTCACAGCCAAG TCCAGGATCTACAAGATCGTTCCTCGGGACAAGGCCTCGGGTGCTATCTC GGGCGGGAGGAAAAACGCCCCCATCGATGTCGCCGGCGGCGGCAGCGGCA GCGGCGGCGGCGGCGGCGCGGCTTCGTACGAGCTGAAGCTGGTCCTGGAG GAGAACGCCAAGTGGCACCTGGCCTCGGACGTGATGAAGGAGATCCGTGA TCTGCACGCCACGAGGCAGCGCAGGGCCGCCGCCGCCGCCGCCGCGGCGT CGTCGTCGAGGGACGGCAGCGGTGGGACCGCCGCCGCGGCGGCGGCTGCG GTCGAGCCCGCCGGCGGCGCGAGAGTTCTTGTCCTCGTGAAGGACGACCA CACGGGCACCCAGCTGCGGCAGCACTCGGCCCTCGGGGGCCCGCCCATGA TGAAGAAGCGTTTTCTGCAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13289:517..3139+

>mRNA_H-canaliculatus_F_contig13289.2686.1 ID=mRNA_H-canaliculatus_F_contig13289.2686.1|Name=mRNA_H-canaliculatus_F_contig13289.2686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1554bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13289:517..3139+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACAACACGCTGCGGGAGCTGAGAGGGGCGGCCCCGTCTCTCGACAG
CGCTCAGCTTACGGTGGAGAGCTGCATCTTCCACTCCTTCGACAGGCGAG
GCGCTGGCACCGCGCTGGATTTTGCTGCTGCTTCCATGGACAACACGCTG
CGGGAGCTGAGAGGGGCGGCCCCGTCTCTCGACAGCGCTCAGCTTACGGT
GGAGAGCTGCATCTTCCACTCCTTCGACAGGCGAGGCGCTGGCACCGCGC
TGGATTTTGCTGCTGCTTCCCGCCAGCTGGAGCCGGAGTGGCACCGCGTG
GGTTTCAAGACCAAGCAGCGCCAGCTGGAGCCGGAGTGGCACCGCGTGGG
TTTCAAGACCAAGCAGCTGCTGCAAGACCTCAAGACCCTGCGGTCCCTGC
TCGACTACGTTTTCCGATACGACGCCATCACCTTCTACCAACTCCTGCTG
GGAGAGAGAAGCAAGGCGGCGGCCGTGAGAGACCCGCCCCTGTGGATCGG
GACCGCCGCCGCAGAGAGCTGCTGCAAGACCTCAAGACCCTGCGGTCCCT
GCTCGACTACGTTTTCCGATACGACGCCATCACCTTCTACCAACTCCTGC
TGGGAGAGAGAAGCAAGGCGGCGGCCGTGAGAGACCCGCCCCTGTGGATC
GGGACCGCCGCCGCAGAGAGGCTTTTCGTCACAGCCAAGTCCAGGATCTA
CAAGATCGTTCCTCGGGACAAGGCCTCGGGTGCTATCTCGGGCGGGAGGA
AAAACGCCCCCATCGATGTCGCCGGCGGCGGCAGCGGCAGCGGCGGCGGC
GGCGGCGCGGCTTCGTACGAGCTGAAGCTGGTCCTGGAGGAGAACGCCAA
GTGGCACCTGGCCTCGGACGTGATGAAGGAGATCCGTGATCTGCACGCCA
CGAGGCAGCGCAGGGCCGCCGCCGCCGCCGCCGCGGCGTCGTCGTCGAGG
GACGGCAGCGGTGGGACCGCCGCCGCGGCGGCGGCTGCGGTCGAGCCCGC
CGGCGGCGCGAGAGTTCTTGTCCTCGTGAAGGACGACCACACGGGCACCC
AGCTGCGGCAGCACTCGGCCCTCGGGGGCCCGCCCATGATGAAGAAGCGT
TTTCTGCAGTGAGCTTTTCGTCACAGCCAAGTCCAGGATCTACAAGATCG
TTCCTCGGGACAAGGCCTCGGGTGCTATCTCGGGCGGGAGGAAAAACGCC
CCCATCGATGTCGCCGGCGGCGGCAGCGGCAGCGGCGGCGGCGGCGGCGC
GGCTTCGTACGAGCTGAAGCTGGTCCTGGAGGAGAACGCCAAGTGGCACC
TGGCCTCGGACGTGATGAAGGAGATCCGTGATCTGCACGCCACGAGGCAG
CGCAGGGCCGCCGCCGCCGCCGCCGCGGCGTCGTCGTCGAGGGACGGCAG
CGGTGGGACCGCCGCCGCGGCGGCGGCTGCGGTCGAGCCCGCCGGCGGCG
CGAGAGTTCTTGTCCTCGTGAAGGACGACCACACGGGCACCCAGCTGCGG
CAGCACTCGGCCCTCGGGGGCCCGCCCATGATGAAGAAGCGTTTTCTGCA
GTGA
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