mRNA_H-canaliculatus_F_contig13289.2686.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE) HSP 1 Score: 321 bits (822), Expect = 4.630e-98 Identity = 188/277 (67.87%), Postives = 207/277 (74.73%), Query Frame = 1
Query: 1 QVQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXX----------ASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRFLQ 801
+VQQAIVVLMD+TLRELRGAAPSLDS++LTVESCIF+SFDR +A RQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGE+SKAAAVRDPPLWIGT+AA+RLFVTAK+R+YKIVPR+ A GA G R + XXXXXXXXXX YE+KLVLEENAKW LA+DVMKEIRDLHA R+R PAGGARVLVLV+D+ T TQLRQHSALGGP MMK+RFLQ
Sbjct: 339 EVQQAIVVLMDHTLRELRGAAPSLDSSELTVESCIFNSFDR----------SAQRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGEKSKAAAVRDPPLWIGTSAADRLFVTAKARVYKIVPRNGAGGAAHGPRNSXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEYEVKLVLEENAKWRLAADVMKEIRDLHAARERQRVVSKPPVPAASPAAAE----------PAGGARVLVLVRDEQTCTQLRQHSALGGPAMMKRRFLQ 595
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI) HSP 1 Score: 288 bits (738), Expect = 1.610e-86 Identity = 165/267 (61.80%), Postives = 178/267 (66.67%), Query Frame = 1
Query: 1 QVQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRFLQ 801
+VQQAIVVLMD+TLRELRGAAPSLDSA+LTVESCIF+SFDR +A RQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGE+SKAAAVRDPPLWIGT+AA+RLFVTAK +KLVLEENAKW LA+DVMKEIRDLHA RQR PAGGARVLVLVKD+ T TQLR+HSA GGP MMK+RFLQ
Sbjct: 354 EVQQAIVVLMDHTLRELRGAAPSLDSAELTVESCIFNSFDR----------SAQRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGEKSKAAAVRDPPLWIGTSAADRLFVTAK--------------------------------------------VKLVLEENAKWRLAADVMKEIRDLHAARQRQRVVSKSPVPAESSAVVE----------PAGGARVLVLVKDEQTCTQLREHSAFGGPAMMKRRFLQ 556
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: W2QZG5_PHYPN (ERCC4 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QZG5_PHYPN) HSP 1 Score: 143 bits (361), Expect = 4.230e-35 Identity = 93/265 (35.09%), Postives = 139/265 (52.45%), Query Frame = 1
Query: 4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRD-LHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
+Q+A++V ++ T++EL+ + SLD+A LT++ + SF + RQL+P WH++ KTKQL+ DL TLR LL Y+ RYDAI++Y L+ ++ R P W+ T AA+RL AK R+Y+IV + N P+++ + ELKLVLE+N KW D +KEI D +HA +++ AGGA VLV+VKD+ T QLR+ +LG MM++RF
Sbjct: 238 MQEALLVALEATVKELQRSTKSLDAADLTMDKALAKSFS----------SFIRRQLDPLWHKLPVKTKQLVGDLSTLRQLLAYLPRYDAISYYSFLVNYQTMNGQQRFPSPWLFTDAADRLLTAAKERLYQIVDP----------KTNTPVNLRQLSSNGSGSNAAENAELKLVLEQNPKW----DALKEILDEVHAEQKKKMKQNMDKLA-------------------AGGATVLVMVKDERTCAQLREFLSLGAQEMMRRRF 459
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A0W8CQU8_PHYNI (DNA repair endonuclease XPF n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CQU8_PHYNI) HSP 1 Score: 143 bits (361), Expect = 4.480e-35 Identity = 93/265 (35.09%), Postives = 139/265 (52.45%), Query Frame = 1
Query: 4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRD-LHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
+Q+A++V ++ T++EL+ + SLD+A LT++ + SF + RQL+P WH++ KTKQL+ DL TLR LL Y+ RYDAI++Y L+ ++ R P W+ T AA+RL AK R+Y+IV + N P+++ + ELKLVLE+N KW D +KEI D +HA +++ AGGA VLV+VKD+ T QLR+ +LG MM++RF
Sbjct: 518 MQEALLVALEATVKELQRSTKSLDAADLTMDKALAKSFS----------SFIRRQLDPLWHKLPVKTKQLVGDLSTLRQLLAYLPRYDAISYYSFLVNYQTMNGQQRFPSPWLFTDAADRLLTAAKERLYQIVDP----------KTNTPVNLRQLSSNGSGSNAAENAELKLVLEQNPKW----DALKEILDEVHAEQKKKMKQNMDKLA-------------------AGGATVLVMVKDERTCAQLREFLSLGAQEMMRRRF 739
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A0P1AUF2_PLAHL (Dna repair endonuclease xpf n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUF2_PLAHL) HSP 1 Score: 140 bits (354), Expect = 3.620e-34 Identity = 88/264 (33.33%), Postives = 138/264 (52.27%), Query Frame = 1
Query: 4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
+Q+A++V ++ T++EL+ + SLD+A LT++ + SF RQL+P WH++ FKTKQL+ DL TLR LL Y+ RYDAI+++ L+ ++ + R P W+ T AA+RL AK R+Y+IV D + + R+ + +G + ELKLVLE N KW +++ E+ + T ++ AGGA VL++VKD+ T QLR+ +LG MM++RF
Sbjct: 235 MQEALLVALEATIKELQRSTKSLDAADLTMDKALAKSFSN----------FIRRQLDPLWHKLPFKTKQLVGDLSTLRQLLAYLPRYDAISYFSFLMSYQTMNSQQRFPSPWLFTDAADRLLTAAKERLYQIV--DYKTKKVVNPRRLTCSNKSGSESVD-------NAELKLVLEHNPKWDALHEILDEVHEKQQTMRKQNFGQGA----------------------AGGASVLIMVKDERTCAQLREFLSLGAQEMMRRRF 457
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A225WL88_9STRA (DNA repair endonuclease n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225WL88_9STRA) HSP 1 Score: 140 bits (353), Expect = 5.180e-34 Identity = 91/270 (33.70%), Postives = 135/270 (50.00%), Query Frame = 1
Query: 4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIV------PRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
+Q+A++V ++ T++EL+ + SLD+A LT++ + SF + RQL+P WH++ KTKQL+ DL TLR LL Y+ RYDAI++Y L+ ++ R P W+ T AA+RL AK R+Y++V P + S G K A + ELKLVLE+N KW +++ E+ D +Q AGGA VLV+VK++ T QLR+ ALG MM++RF
Sbjct: 485 MQEALLVALEATVKELQRSTKSLDAADLTMDKALAKSFS----------SFIRRQLDPLWHKLPAKTKQLVGDLSTLRQLLAYLPRYDAISYYSFLMSYQTMNGQQRFPSPWLFTDAADRLLTAAKERLYQLVDSTTQKPVNLRQIGSSNGGKTAD-----------------NVELKLVLEQNPKWDALKEILDEVHDEQKKKQNKEKMA------------------------AGGANVLVMVKEERTCAQLREFLALGAQEMMRRRF 703
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A662X8F6_9STRA (ERCC4 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X8F6_9STRA) HSP 1 Score: 140 bits (352), Expect = 6.870e-34 Identity = 99/267 (37.08%), Postives = 147/267 (55.06%), Query Frame = 1
Query: 4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDV---AGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
+Q+A++V ++ T++EL+ + +LD+A LT+E + SF ++ RQL+P WH+V KTKQL+ DL TLR LL Y+ RYDAI++Y L+ ++ R P W+ T AA+RL AK R+Y++V R + API++ A + ELKLVLE+N KW ++++E++ XXXXXXXXXXX GGA +LV+VKD+ T QLR+ +LG MM++RF
Sbjct: 323 MQEALLVALEATVKELQRSTKALDAADLTMEKALAKSFS----------SSIRRQLDPLWHKVPVKTKQLVGDLSTLRQLLVYLPRYDAISYYCFLVNHQTMNGQQRFPSPWLFTEAADRLLTAAKERLYQVVDR----------QTKAPINLRRFASSSSSGTAARSTETVELKLVLEQNPKWTALKEIIEEVQQXXXXXXXXXXXXXXXXXX-------------------GGASILVMVKDERTCAQLREFLSLGAQEMMRRRF 550
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A6G0KZF6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0KZF6_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.800e-33 Identity = 104/273 (38.10%), Postives = 148/273 (54.21%), Query Frame = 1
Query: 4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIV---------PRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
+Q+A++V ++ T++EL+ + SLD+A LT++ + SF + RQL+P WH++ KTKQL+ DL TLR LL Y+ RYDAI++Y L+ ++ R P W+ T AA+RL AK RIY++V PR A+ + NA +D A ELKLVLE+N KW +++ E+ D XXXXXXXXXXXX AGGA +LV+VKD+ T QLR+ +LG MM++RF
Sbjct: 244 MQEALLVALEATVKELQRSTKSLDAADLTMDKALARSFS----------SFIRRQLDPLWHKLPVKTKQLVGDLATLRQLLAYIPRYDAISYYSFLVNYQTMNGQQRFPSPWLFTDAADRLLTAAKERIYQVVDSTTKKPVNPRQFAANS------NA-VDRA---------------ELKLVLEQNPKWDALKEILDEVHD------------------EQXXXXXXXXXXXXDKLAAGGASILVMVKDERTCAQLREFLSLGAQEMMRRRF 466
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A836CHZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ1_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.220e-33 Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 1
Query: 4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAV------RDPPLWIGTAAAERLFVTAKSRIYKIVPRDKAS 420
VQQA+ V MD LRELR AP+LD A+LTVE+ +F +FD A+ RQL+PEWHRV +T+QL+ DL TLR LLDY+FRYD +TFY L R+ +AA P +W+ AA+RLF AK+R+Y++V DKA+
Sbjct: 224 VQQAVAVTMDVCLRELRRRAPALDVAELTVENGLFEAFD----------ASLRRQLDPEWHRVRPETRQLVADLSTLRKLLDYLFRYDCVTFYGFLQAVRAASAAGGRXXGGSAPSMWLSMDAADRLFEQAKARVYRVVATDKAA 358
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Match: A0A3F2S0Q9_9STRA (ERCC4 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S0Q9_9STRA) HSP 1 Score: 137 bits (344), Expect = 7.960e-33 Identity = 89/264 (33.71%), Postives = 138/264 (52.27%), Query Frame = 1
Query: 4 VQQAIVVLMDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPEWHRVGFKTKQLLQDLKTLRSLLDYVFRYDAITFYQLLLGERSKAAAVRDPPLWIGTAAAERLFVTAKSRIYKIVPRDKASGAISGGRKNAPIDVAGGXXXXXXXXXXASYELKLVLEENAKWHLASDVMKEIRDLHATRQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGGARVLVLVKDDHTGTQLRQHSALGGPPMMKKRF 795
+Q+A++V ++ T++EL+ + SLD+A LT++ + SF RQL+P WH++ KTKQL+ DL TL LL Y+ RYDAI++Y L+ ++ R P W+ T AA+RL AK R+Y+IV K I+ R + D + + ELKLV+E++ KW +V+ E+ +A +QR AGGARV+V++KD+ T Q+R+ +LGG MM++RF
Sbjct: 319 MQEALLVALEATVKELQRSTKSLDAADLTMDKALAKSFSN----------FIRRQLDPLWHKLPVKTKQLVGDLSTLHQLLAYLPRYDAISYYSFLVNYQTMNGQQRFPSPWLFTDAADRLLTAAKERLYQIVD-SKTKQPINIRRFPSSSDASAAD----------NAELKLVMEQSPKWKALKEVLDEV---YAEKQRERSKTTKQDQDQIA---------------AGGARVVVMIKDERTCAQVREFLSLGGQEMMRRRF 543 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13289.2686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13289.2686.1 >prot_H-canaliculatus_F_contig13289.2686.1 ID=prot_H-canaliculatus_F_contig13289.2686.1|Name=mRNA_H-canaliculatus_F_contig13289.2686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=259bp MDNTLRELRGAAPSLDSAQLTVESCIFHSFDRRGAGTALDFAAASRQLEPback to top mRNA from alignment at H-canaliculatus_F_contig13289:517..3139+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13289.2686.1 ID=mRNA_H-canaliculatus_F_contig13289.2686.1|Name=mRNA_H-canaliculatus_F_contig13289.2686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2623bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13289:517..3139+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13289:517..3139+ >mRNA_H-canaliculatus_F_contig13289.2686.1 ID=mRNA_H-canaliculatus_F_contig13289.2686.1|Name=mRNA_H-canaliculatus_F_contig13289.2686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1554bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13289:517..3139+ (Hapterophycus canaliculatus Oshoro5f female)back to top |