mRNA_H-canaliculatus_F_contig13157.2597.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13157.2597.1
Unique NamemRNA_H-canaliculatus_F_contig13157.2597.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 3.680e-50
Identity = 94/141 (66.67%), Postives = 114/141 (80.85%), Query Frame = 1
Query:    1 AVFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDEAMPTQTPLELRQSAGSDDDVPVFESVPATWRSFMRHVSVAEEPGPTQSTSGTTLTVN 423
            ++FE LSPYESESD+WLSRGGH+IVFLSMFD+LLLKVDVS ESD+SQA+F+GVLVAGH+L++L I+VEV G+CYA  KKR V  A   ++   LR  AGSDD VP FESVPA+W SFMR  SV+EEPGPT+  +G  + VN
Sbjct: 1221 SLFEILSPYESESDMWLSRGGHVIVFLSMFDLLLLKVDVSCESDQSQAVFSGVLVAGHVLMILVIIVEVVGMCYASGKKRVVGAASSPESSPGLRPRAGSDD-VPAFESVPASWPSFMRQSSVSEEPGPTRRIAGI-MVVN 1359          
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.120e-49
Identity = 89/139 (64.03%), Postives = 111/139 (79.86%), Query Frame = 1
Query:    4 VFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDEAMPTQTPLELRQSAGSDDDVPVFESVPATWRSFMRHVSVAEEPGPTQSTSGTTLTV 420
            VFE +SPY SESD WLSRGGH+IVFLSMFD LLLKVDVS ES++SQ +FAGV VAGH+L++LAIVVEV G+C A  KKR V+EA+P++    LR   GSDD VPVFES PA+W++F+   SV+E+PGP +S SG  +T+
Sbjct:  962 VFEVMSPYTSESDTWLSRGGHVIVFLSMFDALLLKVDVSSESEQSQDVFAGVFVAGHVLLILAIVVEVVGICLASGKKRGVEEAVPSEGLPVLRPRGGSDD-VPVFESAPASWKTFVGQASVSEKPGPRRSASGAVVTM 1099          
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 3.570e-45
Identity = 88/134 (65.67%), Postives = 104/134 (77.61%), Query Frame = 1
Query:    4 VFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDEAMPTQTPLELRQSAGSDDDVPVFESVPATWRSFMRHVSVAEEPGPTQSTSG 405
            +FE LSPYESESD+WLSRGGH+IVFLSMFD+LLLKVDVS ES+ SQAIF+ V VAGH+L++L IVVEV G+CYA  KKR V  A  +++   LR  AGSDD VP  ESVPA+W SFMR  SV+EE G  Q+  G
Sbjct: 1547 LFEILSPYESESDMWLSRGGHVIVFLSMFDLLLLKVDVSGESNHSQAIFSRVFVAGHVLMILVIVVEVVGICYASGKKRVVGAASSSESSPGLRPRAGSDD-VPALESVPASWASFMRQGSVSEEQGGPQAQEG 1679          
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.130e-44
Identity = 88/143 (61.54%), Postives = 105/143 (73.43%), Query Frame = 1
Query:    1 AVFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDEAMPTQTPLELRQSAGSDDDVPVFESVPATWRSFMRHVSVAEEPGPTQSTSGTTLTVNRP 429
            AVF+ LSPY S SD WLSRGGH+IVFLSMFD LLLKVDVS + D+SQA FAGVLVAGH+L++LAIVVEVA +CYA R+KR  +    ++ P       GSDD VP  ES PA WRSF+R  SV+E+ G T+S SGT +T   P
Sbjct:  843 AVFDVLSPYTSASDTWLSRGGHVIVFLSMFDFLLLKVDVSGDRDQSQAAFAGVLVAGHVLMILAIVVEVAALCYASRRKRVAEGEEASERPR-----VGSDD-VPALESAPAPWRSFLRLRSVSEKTGSTRSVSGTVVTTGGP 979          
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.040e-43
Identity = 88/144 (61.11%), Postives = 107/144 (74.31%), Query Frame = 1
Query:    1 AVFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDEAMPTQTPLELRQSAGSDDDVPVFESVPATWRS-FMRHVSVAEEPGPTQSTSGTTLTVNRP 429
            A+FE +SPY+S+SD+WLSRGGH+IVF SMFD+LL KVDVS E + SQA+FAGVLVAGH+L+VLAIVVEV G+CY  R +R    A  T   L  R  AGSDD V  FESVPA+W S F R  SV+E+PGP +  +G  +TV RP
Sbjct:  948 AIFEMVSPYKSDSDMWLSRGGHVIVFFSMFDLLLRKVDVSDEREESQAVFAGVLVAGHVLMVLAIVVEVVGICYGSRGERV---AKGTAV-LSERPRAGSDDGVTGFESVPASWTSSFRRQGSVSEKPGPNRIVAGEVVTVERP 1087          
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: A0A6H5K0D5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D5_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.700e-43
Identity = 85/141 (60.28%), Postives = 100/141 (70.92%), Query Frame = 1
Query:    4 VFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDEAMPTQTPLELRQSAGSDDDVPVFESVPATWRSFMRHVSVAEEPGPTQSTSGTTLTVNR 426
            VFE LSPY SE D+ LSRG H+IV LSMFD+LLLKVDVS ES++SQ  FA VLVAGH+L++LAI+VEV GVC A   KR V  A  T+    L   AGSDD V  FES PA+W   MR  SV+EEPGPT+  +GT + V R
Sbjct:  156 VFEMLSPYTSEPDMCLSRGDHVIVPLSMFDLLLLKVDVSGESEQSQTAFAAVLVAGHVLMILAIIVEVVGVCCASGTKRVVGAAASTENVPGLTPRAGSDD-VLAFESAPASWPPSMRERSVSEEPGPTRRVAGTVIAVGR 295          
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: A0A6H5LAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAD4_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.850e-35
Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = 1
Query:    4 VFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDEAMPTQTPLELRQSAGSDDDVPVFESVP 333
            +FE LSPY SESD+WLSRGGH+IVFLS+FD++LLKVDVS ESD+SQA+F+GVL+AGH+L++L IVVEV G+CYA   KR V  A  +++   LR   GSDD  P FESVP
Sbjct:  636 LFEILSPYGSESDMWLSRGGHVIVFLSIFDLVLLKVDVSGESDQSQAVFSGVLLAGHVLMILVIVVEVVGICYASGMKRVVGAASSSESSPGLRPRPGSDD--PAFESVP 743          
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: A0A6H5JL43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL43_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.090e-30
Identity = 66/99 (66.67%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    4 VFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDEAM-PTQTPLELRQSAG 297
            VFE LSPYESESD+WLSRGGH+IVFLS FD+LLLKVDVS ESD+SQ +FAGVLVAGHML +LAI  EV G+ YA  KKR V   + P  +P E +++ G
Sbjct:  674 VFEILSPYESESDIWLSRGGHVIVFLSTFDLLLLKVDVSGESDQSQTMFAGVLVAGHMLPILAIFAEVVGIWYASGKKRVVRAGVSPEISPGEAKRTIG 772          
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.910e-29
Identity = 65/113 (57.52%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    1 AVFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDEAMPTQTPLELRQSAGSDDDVPVFESVPAT 339
            AVF+ LSPY SE D+WLSRGG ++VFLSMFD+LLLKVDVSHE  +SQ  +AGVLVAGH+L+ LAI  EV G+CYA R+ R ++E     +   LR  A S++  PVF   PA+
Sbjct:  942 AVFDILSPYTSEFDMWLSRGGQVVVFLSMFDLLLLKVDVSHERSQSQQAYAGVLVAGHVLMFLAISAEVVGICYASRRNRVMEEDKAFLSFPGLRARATSNE-TPVFLRSPAS 1053          
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.790e-27
Identity = 65/135 (48.15%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    4 VFEALSPYESESDVWLSRGGHMIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGVCYAFRKKRAVDE-AMPTQT---PLELRQSA------GSDDDVPVFESVPATWRSFMRHVSVAEE 378
            V+E L+PY S+SD+WLSRGGH+IVFLSMFD+LLLKVDVS E   SQ +FAGV+VAGH L+ LA++VE  GVCYA  K + V E ++P++    P   R  +        D++    E+   +W+SF+   +  EE
Sbjct: 1061 VYEMLAPYRSDSDMWLSRGGHVIVFLSMFDVLLLKVDVSDERTESQRVFAGVIVAGHCLMFLAVIVEAVGVCYASSKGQPVSEHSVPSRRTFGPAAQRSRSTRALETAEDEECLPAEAPLGSWKSFVGLDAALEE 1195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13157.2597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7G1E0_ECTSI3.680e-5066.67EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5J7J9_9PHAE3.120e-4964.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3S0_ECTSI3.570e-4565.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4F7_9PHAE2.130e-4461.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX12_9PHAE1.040e-4361.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0D5_9PHAE2.700e-4360.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAD4_9PHAE2.850e-3564.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL43_9PHAE2.090e-3066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM10_ECTSI4.910e-2957.52Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
A0A6H5JWT9_9PHAE2.790e-2748.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13157contigH-canaliculatus_F_contig13157:65..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size447
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13157.2597.1prot_H-canaliculatus_F_contig13157.2597.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13157 131..496 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.1626363-UTR-H-canaliculatus_F_contig13157:64..1301622929053.1626363-UTR-H-canaliculatus_F_contig13157:64..130Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13157 65..130 +
1696845661.670159-UTR-H-canaliculatus_F_contig13157:64..1301696845661.670159-UTR-H-canaliculatus_F_contig13157:64..130Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13157 65..130 +
1622929053.202475-UTR-H-canaliculatus_F_contig13157:496..5111622929053.202475-UTR-H-canaliculatus_F_contig13157:496..511Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13157 497..511 +
1696845661.689284-UTR-H-canaliculatus_F_contig13157:496..5111696845661.689284-UTR-H-canaliculatus_F_contig13157:496..511Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13157 497..511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.1887562-CDS-H-canaliculatus_F_contig13157:130..4961622929053.1887562-CDS-H-canaliculatus_F_contig13157:130..496Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13157 131..496 +
1696845661.6793444-CDS-H-canaliculatus_F_contig13157:130..4961696845661.6793444-CDS-H-canaliculatus_F_contig13157:130..496Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13157 131..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13157.2597.1

>prot_H-canaliculatus_F_contig13157.2597.1 ID=prot_H-canaliculatus_F_contig13157.2597.1|Name=mRNA_H-canaliculatus_F_contig13157.2597.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
MIVFLSMFDMLLLKVDVSHESDRSQAIFAGVLVAGHMLIVLAIVVEVAGV
CYAFRKKRAVDEAMPTQTPLELRQSAGSDDDVPVFESVPATWRSFMRHVS
VAEEPGPTQSTSGTTLTVNRP*
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mRNA from alignment at H-canaliculatus_F_contig13157:65..511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13157.2597.1 ID=mRNA_H-canaliculatus_F_contig13157.2597.1|Name=mRNA_H-canaliculatus_F_contig13157.2597.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=447bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13157:65..511+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGTGTTCGAGGCGCTATCGCCATACGAATCTGAGTCCGACGTATGGCT GTCGCGTGGTGGCCATATGATAGTGTTCTTGAGCATGTTTGACATGTTGC TGCTGAAAGTAGACGTTTCTCATGAGAGCGACAGGAGTCAGGCTATATTT GCCGGAGTGTTGGTGGCGGGCCACATGTTGATAGTGCTTGCCATCGTCGT CGAGGTCGCTGGTGTCTGCTACGCATTCCGGAAGAAACGCGCTGTCGACG AAGCGATGCCAACCCAGACTCCGCTGGAATTGAGGCAAAGCGCAGGGTCG GACGATGATGTGCCCGTCTTCGAGAGCGTTCCAGCGACATGGAGGTCGTT TATGCGGCATGTGTCGGTGGCAGAGGAGCCAGGACCGACTCAAAGCACCT CGGGAACTACGCTGACAGTGAACAGGCCGTAGAGATGCTGATTGCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13157:65..511+

>mRNA_H-canaliculatus_F_contig13157.2597.1 ID=mRNA_H-canaliculatus_F_contig13157.2597.1|Name=mRNA_H-canaliculatus_F_contig13157.2597.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13157:65..511+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATAGTGTTCTTGAGCATGTTTGACATGTTGCTGCTGAAAGTAGACGT
TTCTCATGAGAGCGACAGGAGTCAGGCTATATTTGCCGGAGTGTTGGTGG
CGGGCCACATGTTGATAGTGCTTGCCATCGTCGTCGAGGTCGCTGGTGTC
TGCTACGCATTCCGGAAGAAACGCGCTGTCGACGAAGCGATGCCAACCCA
GACTCCGCTGGAATTGAGGCAAAGCGCAGGGTCGGACGATGATGTGCCCG
TCTTCGAGAGCGTTCCAGCGACATGGAGGTCGTTTATGCGGCATGTGTCG
GTGGCAGAGGAGCCAGGACCGACTCAAAGCACCTCGGGAACTACGCTGAC
AGTGAACAGGCCGTAGATGATAGTGTTCTTGAGCATGTTTGACATGTTGC
TGCTGAAAGTAGACGTTTCTCATGAGAGCGACAGGAGTCAGGCTATATTT
GCCGGAGTGTTGGTGGCGGGCCACATGTTGATAGTGCTTGCCATCGTCGT
CGAGGTCGCTGGTGTCTGCTACGCATTCCGGAAGAAACGCGCTGTCGACG
AAGCGATGCCAACCCAGACTCCGCTGGAATTGAGGCAAAGCGCAGGGTCG
GACGATGATGTGCCCGTCTTCGAGAGCGTTCCAGCGACATGGAGGTCGTT
TATGCGGCATGTGTCGGTGGCAGAGGAGCCAGGACCGACTCAAAGCACCT
CGGGAACTACGCTGACAGTGAACAGGCCGTAG
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