mRNA_H-canaliculatus_F_contig13064.2535.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13064.2535.1
Unique NamemRNA_H-canaliculatus_F_contig13064.2535.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: N9CSC5_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Acinetobacter towneri DSM 14962 = CIP 107472 TaxID=1120929 RepID=N9CSC5_9GAMM)

HSP 1 Score: 113 bits (283), Expect = 9.480e-30
Identity = 65/103 (63.11%), Postives = 67/103 (65.05%), Query Frame = 3
Query:   36 FTPLVGVLFTFPSRYWFTIGQ*GVLSLRRWSSDLQTEFHVFRPT*YVPSC-FEYGAITRYGHASQHVLL--TLKARLVPVRSPLLGEYQLISFPPGT*MFQFP 335
            FTPL GVLF FPSRYWFTIGQ GV SL  WS  +QT FHV RPT +   C F YG IT Y   SQ V L  T    L P RSPLL E QLISFP GT MF FP
Sbjct:    2 FTPLTGVLFAFPSRYWFTIGQSGVFSLGGWSPHIQTRFHVPRPTRHHCVCPFVYGNITLYVRTSQSVPLEHTQLNGLFPFRSPLLRESQLISFPKGTEMFHFP 104          
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: A0A6G5ADV0_RHIMP (Uncharacterized protein (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5ADV0_RHIMP)

HSP 1 Score: 108 bits (271), Expect = 2.330e-28
Identity = 62/109 (56.88%), Postives = 69/109 (63.30%), Query Frame = 3
Query:   15 AFGFRYCFTPLVGVLFTFPSRYWFTIGQ*GVLSLRRWSSDLQTEFHVFRPT*YVPSCFEYGAIT--RYGHASQHVLLTLKARLVPVRSPLLGEYQLISFPPGT*MFQFP 335
            A  FR CFTPLVGVLFTFPSRY FTIG+ GVL L  WS  +QT FHV RPT  V  C     ++        +  L      LVPVRSPLL E +L+SFPPGT MFQFP
Sbjct:    1 ASDFRICFTPLVGVLFTFPSRYLFTIGRRGVLRLGGWSPHVQTGFHVSRPT-RVSCCLTSTGLSPAMADFPFRSTLFHKSTGLVPVRSPLLRESRLMSFPPGTEMFQFP 108          
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: Q3BKI1_9PROT (Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI1_9PROT)

HSP 1 Score: 110 bits (274), Expect = 2.330e-27
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 PTDCRRSVSGTVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQNFTCSALLNTSHHASNTGLSPAMAMLPNMF 234
            PT CR SVSGTVSLP SGCFSPFPHGT SLSV++EYL  E GPP+FRQ+FTC ALL      + TGLSPAMA L   F
Sbjct:   85 PTACRHSVSGTVSLPLSGCFSPFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFTPTGLSPAMARLSRRF 162          
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: A0A2S2PQL9_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PQL9_SCHGA)

HSP 1 Score: 106 bits (265), Expect = 1.380e-26
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 PTDCRRSVSGTVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQNFTCSALL 168
            PT CRR VS TVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQ+FTC ALL
Sbjct:   25 PTACRRPVSETVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALL 80          
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: H6SIC1_PARPM (Uncharacterized protein (Fragment) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIC1_PARPM)

HSP 1 Score: 101 bits (252), Expect = 8.800e-26
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 PTDCRRSVSGTVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQNFTCSALL 168
            PT CR  VSGTVSLPSSGCFSPFPHGTGSLSV KEYLA EGGPP+FRQ FTC ALL
Sbjct:   17 PTACRHPVSGTVSLPSSGCFSPFPHGTGSLSVVKEYLALEGGPPMFRQGFTCPALL 72          
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: A0A6A5L4G5_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L4G5_LUPAL)

HSP 1 Score: 109 bits (273), Expect = 1.330e-25
Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 PTDCRRSVSGTVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQNFTCSALLNTSHHASNTGLSPAMAMLPNMF 234
            PT CR  VSGTVSLP SGCFSPFPHGTG+LSV++EYL  EGGPP+FRQ FTC ALL        TGLSPAMA L   F
Sbjct:   43 PTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALLVDCFRFIRTGLSPAMARLSRRF 120          
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: A0A6A5L866_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L866_LUPAL)

HSP 1 Score: 109 bits (273), Expect = 1.420e-25
Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 PTDCRRSVSGTVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQNFTCSALLNTSHHASNTGLSPAMAMLPNMF 234
            PT CR  VSGTVSLP SGCFSPFPHGTG+LSV++EYL  EGGPP+FRQ FTC ALL        TGLSPAMA L   F
Sbjct:   43 PTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALLVDRFRFIRTGLSPAMARLSRRF 120          
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: A0A6A5L6S4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6S4_LUPAL)

HSP 1 Score: 109 bits (273), Expect = 1.430e-25
Identity = 54/78 (69.23%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 PTDCRRSVSGTVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQNFTCSALLNTSHHASNTGLSPAMAMLPNMF 234
            PT CR  VSGTVSLP SGCFSPFPHGTG+LSV++EYL  EGGPP+FRQ FTC ALL        TGLSPAMA L   F
Sbjct:   43 PTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALLVDRFRFIRTGLSPAMARLSRRF 120          
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: D4BE78_9ENTR (Uncharacterized protein n=1 Tax=Citrobacter youngae ATCC 29220 TaxID=500640 RepID=D4BE78_9ENTR)

HSP 1 Score: 99.8 bits (247), Expect = 5.770e-25
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   21 GFRYCFTPLVGVLFTFPSRYWFTIGQ*GVLSLRRWSSDLQTEFHVFRPT*----YVPSCFE--YGAITRYGHASQHVLLTLKARLVPVRSPLLGEYQLISFPPGT 317
            GFR+ FTPL GVLF FPSRYWFTIGQ GV SL  WS  +QT +HV RPT     +V  C    +   + +   S +      + L+PVRSPLLGE +LISFP GT
Sbjct:    5 GFRFFFTPLAGVLFAFPSRYWFTIGQSGVFSLGGWSPHIQTGYHVSRPTLRAHNHVHFCVRGYHPVPSAFPDRSTNTHADSGSGLLPVRSPLLGESRLISFPRGT 109          
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Match: UPI001A08AA19 (Uncharacterized protein n=1 Tax=Pseudorhizobium halotolerans TaxID=1233081 RepID=UPI001A08AA19)

HSP 1 Score: 103 bits (256), Expect = 7.730e-25
Identity = 50/78 (64.10%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 PTDCRRSVSGTVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQNFTCSALLNTSHHASNTGLSPAMAMLPNMF 234
            PT CR  VSG++SLPSSGCFSPFPHGT SLSV  EYL  E G P+FRQ+FTC ALL  +  ++ TGLSP +A L N+F
Sbjct:   69 PTVCRHPVSGSISLPSSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNQCSTPTGLSPTIAKLSNLF 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13064.2535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
N9CSC5_9GAMM9.480e-3063.11Uncharacterized protein (Fragment) n=1 Tax=Acineto... [more]
A0A6G5ADV0_RHIMP2.330e-2856.88Uncharacterized protein (Fragment) n=1 Tax=Rhipice... [more]
Q3BKI1_9PROT2.330e-2769.23Uncharacterized protein n=2 Tax=Magnetospirillum g... [more]
A0A2S2PQL9_SCHGA1.380e-2691.07Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
H6SIC1_PARPM8.800e-2685.71Uncharacterized protein (Fragment) n=1 Tax=Pararho... [more]
A0A6A5L4G5_LUPAL1.330e-2569.23Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L866_LUPAL1.420e-2569.23Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L6S4_LUPAL1.430e-2569.23Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
D4BE78_9ENTR5.770e-2552.38Uncharacterized protein n=1 Tax=Citrobacter younga... [more]
UPI001A08AA197.730e-2564.10Uncharacterized protein n=1 Tax=Pseudorhizobium ha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13064contigH-canaliculatus_F_contig13064:1521..1860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score183.0
Seed ortholog evalue6.7e-44
Seed eggNOG ortholog351016.RAZWK3B_00595
EggNOG OGs1NARM@1224,2DNPH@1,2UJNP@28211,32YF1@2
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size282
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.67245-UTR-H-canaliculatus_F_contig13064:1520..15781622929041.67245-UTR-H-canaliculatus_F_contig13064:1520..1578Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13064 1521..1578 -
1696845658.0854561-UTR-H-canaliculatus_F_contig13064:1520..15781696845658.0854561-UTR-H-canaliculatus_F_contig13064:1520..1578Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13064 1521..1578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929041.7097845-CDS-H-canaliculatus_F_contig13064:1578..18601622929041.7097845-CDS-H-canaliculatus_F_contig13064:1578..1860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13064 1579..1860 -
1696845658.0985801-CDS-H-canaliculatus_F_contig13064:1578..18601696845658.0985801-CDS-H-canaliculatus_F_contig13064:1578..1860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13064 1579..1860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13064.2535.1prot_H-canaliculatus_F_contig13064.2535.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13064 1579..1860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13064.2535.1

>prot_H-canaliculatus_F_contig13064.2535.1 ID=prot_H-canaliculatus_F_contig13064.2535.1|Name=mRNA_H-canaliculatus_F_contig13064.2535.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=94bp
PTDCRRSVSGTVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQNF
TCSALLNTSHHASNTGLSPAMAMLPNMFFSHSRLGWSPFARRY*
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mRNA from alignment at H-canaliculatus_F_contig13064:1521..1860-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13064.2535.1 ID=mRNA_H-canaliculatus_F_contig13064.2535.1|Name=mRNA_H-canaliculatus_F_contig13064.2535.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=340bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13064:1521..1860- (Hapterophycus canaliculatus Oshoro5f female)
CCAACTGATTGTAGGCGTTCGGTTTCAGGTACTGTTTCACTCCCCTCGTC GGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTA AGGAGTACTTAGCCTTCGAAGGTGGTCCTCCGATCTTCAGACAGAATTTC ACGTGTTCCGCCCTACTTAATACGTCCCATCATGCTTCGAATACGGGGCT ATCACCCGCTATGGCCATGCTTCCCAACATGTTCTTCTCACACTCAAGGC TCGGCTGGTCCCCGTTCGCTCGCCGCTACTAGGGGAGTATCAATTGATTT CCTTTCCTCCGGGTACTTAGATGTTTCAGTTCCCCGGGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13064:1521..1860-

>mRNA_H-canaliculatus_F_contig13064.2535.1 ID=mRNA_H-canaliculatus_F_contig13064.2535.1|Name=mRNA_H-canaliculatus_F_contig13064.2535.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=564bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13064:1521..1860- (Hapterophycus canaliculatus Oshoro5f female)
CCAACTGATTGTAGGCGTTCGGTTTCAGGTACTGTTTCACTCCCCTCGTC
GGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTA
AGGAGTACTTAGCCTTCGAAGGTGGTCCTCCGATCTTCAGACAGAATTTC
ACGTGTTCCGCCCTACTTAATACGTCCCATCATGCTTCGAATACGGGGCT
ATCACCCGCTATGGCCATGCTTCCCAACATGTTCTTCTCACACTCAAGGC
TCGGCTGGTCCCCGTTCGCTCGCCGCTACTAGCCAACTGATTGTAGGCGT
TCGGTTTCAGGTACTGTTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTT
CCCTCACGGTACTGGTTCACTATCGGTCAGTAAGGAGTACTTAGCCTTCG
AAGGTGGTCCTCCGATCTTCAGACAGAATTTCACGTGTTCCGCCCTACTT
AATACGTCCCATCATGCTTCGAATACGGGGCTATCACCCGCTATGGCCAT
GCTTCCCAACATGTTCTTCTCACACTCAAGGCTCGGCTGGTCCCCGTTCG
CTCGCCGCTACTAG
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