mRNA_H-canaliculatus_F_contig13004.2499.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13004.2499.1
Unique NamemRNA_H-canaliculatus_F_contig13004.2499.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A6H5KXQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXQ0_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.720e-44
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1
Query:   37 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSAGGKR 294
            AQKVLQKSQQMARNEHTLDYDERNPFEVDCQ+LKPIYRG+PSCKCPYC S+Y  SAKG+VCVTCGLSQ+GVETLGLVTTSSAGGKR
Sbjct:  807 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSCKCPYCGSAYPLSAKGTVCVTCGLSQIGVETLGLVTTSSAGGKR 892          
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: D8LL95_ECTSI (Coatomer subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL95_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 3.630e-44
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 1
Query:   37 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSAGGKR 294
            AQKVLQKSQQMARNEHTLDYDERNPFEVDCQ+LKPIYRG+PSCKCPYC S+Y  SAKG VCVTCGLSQ+GVETLGLVTTSSAGGKR
Sbjct: 1173 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSCKCPYCGSAYPLSAKGMVCVTCGLSQIGVETLGLVTTSSAGGKR 1258          
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A835Z8J6_9STRA (Coatomer subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J6_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.970e-32
Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 1
Query:   13 RPARSKSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSA 282
            R A  + +AQK+LQKSQQMARNE  LDYDERNPF +DC  LKPIYRG+P  KCPYC+SSY P++  +VC TCG+SQVGVETLGLVTT+++
Sbjct: 1137 RNAELRDKAQKILQKSQQMARNEVDLDYDERNPFVIDCATLKPIYRGAPVVKCPYCSSSYSPASDKTVCQTCGISQVGVETLGLVTTTAS 1226          
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S3YID5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YID5_HETAK)

HSP 1 Score: 112 bits (280), Expect = 1.100e-28
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   28 KSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSA 282
            K +AQKVLQKS+QM  NEH LDYDERNPF VD   L PIYRGSP   CP+CAS YQP     +C TC +SQ+GVET+GLV+  +A
Sbjct:  153 KLKAQKVLQKSEQMGSNEHALDYDERNPFAVDAADLVPIYRGSPEVTCPFCASHYQPRHANGLCATCNISQIGVETIGLVSQVAA 237          
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: W7TRK7_9STRA (Coatomer subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRK7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.180e-28
Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = 1
Query:   37 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSAG 285
            AQKVLQKS+QMARNEH ++YD+R  F +DC+ L PI RG+P  KC YC SSY P +KG +CVTCG+SQVG+ETLGLVT++ +G
Sbjct: 1188 AQKVLQKSEQMARNEHAIEYDDRQAFVIDCRTLLPIPRGAPCLKCSYCGSSYTPESKGVLCVTCGISQVGLETLGLVTSAGSG 1270          
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S2FV00_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV00_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.280e-28
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   28 KSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSA 282
            K +AQKV+ KS++  RNEHTL YDERNPF++DCQA  P+YRGSP  KC YC S+YQP     +C TCG++ +GVETLGL T  S+
Sbjct:  221 KGKAQKVILKSEKEGRNEHTLQYDERNPFDIDCQAFVPVYRGSPVVKCAYCGSAYQPECTNKLCTTCGIALIGVETLGLPTGRSS 305          
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S3GXR2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXR2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.370e-27
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   19 ARSKSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSS 279
            A S+S+AQKVLQKS+Q  RNE+T+DYDERNPF +DC  LKP+Y+G+P  KC YCA+ Y    KG +C+ CG+S VG++T+GLVT S+
Sbjct:  410 ADSRSKAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLVTQSA 496          
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S3GXJ7_9STRA (Coatomer subunit alpha n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXJ7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.640e-27
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   19 ARSKSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSS 279
            A S+S+AQKVLQKS+Q  RNE+T+DYDERNPF +DC  LKP+Y+G+P  KC YCA+ Y    KG +C+ CG+S VG++T+GLVT S+
Sbjct: 1167 ADSRSKAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLVTQSA 1253          
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: F0YGR3_AURAN (Coatomer subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGR3_AURAN)

HSP 1 Score: 111 bits (277), Expect = 2.330e-26
Identity = 51/83 (61.45%), Postives = 66/83 (79.52%), Query Frame = 1
Query:   28 KSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTS 276
            +S+AQ V++ S+Q ARNEH L+YDERNPF+++C  L+PIYRGSPS  CPYC S +    KGS+CVTC L+ +GVETLGLV+ S
Sbjct: 1136 RSRAQLVIRNSEQKARNEHALNYDERNPFDIECTDLQPIYRGSPSASCPYCRSVHSTKMKGSLCVTCNLAVIGVETLGLVSQS 1218          
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S2RES0_9STRA (Coatomer subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.820e-25
Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   28 KSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTS 276
            K +AQKV+ KS+QMARNEH L YDERNPF++D     PIYRGSP  +C YC ++Y P  K  VC  CGLS VGVET+GLVT S
Sbjct: 1170 KVKAQKVVLKSEQMARNEHQLHYDERNPFDIDSDTFLPIYRGSPVVRCAYCNAAYSPDMKNKVCRACGLSLVGVETIGLVTAS 1252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXQ0_9PHAE1.720e-4490.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL95_ECTSI3.630e-4490.70Coatomer subunit alpha n=1 Tax=Ectocarpus siliculo... [more]
A0A835Z8J6_9STRA1.970e-3268.89Coatomer subunit alpha n=1 Tax=Tribonema minus Tax... [more]
A0A7S3YID5_HETAK1.100e-2863.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TRK7_9STRA1.180e-2865.06Coatomer subunit alpha n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S2FV00_9STRA2.280e-2860.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3GXR2_9STRA1.370e-2759.77Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3GXJ7_9STRA2.640e-2759.77Coatomer subunit alpha n=1 Tax=Spumella elongata T... [more]
F0YGR3_AURAN2.330e-2661.45Coatomer subunit alpha n=1 Tax=Aureococcus anophag... [more]
A0A7S2RES0_9STRA3.820e-2562.65Coatomer subunit alpha n=1 Tax=Rhizochromulina mar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13004contigH-canaliculatus_F_contig13004:2915..3211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4.4e-38
Seed eggNOG ortholog2880.D8LL95
KEGG koko:K05236
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG0292@1,KOG0292@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVesicle coat complex COPI, alpha subunit
Ec32 orthologEc-27_001800.1
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929034.757484-CDS-H-canaliculatus_F_contig13004:2914..32111622929034.757484-CDS-H-canaliculatus_F_contig13004:2914..3211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13004 2915..3211 -
1696845655.5553446-CDS-H-canaliculatus_F_contig13004:2914..32111696845655.5553446-CDS-H-canaliculatus_F_contig13004:2914..3211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13004 2915..3211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13004.2499.1prot_H-canaliculatus_F_contig13004.2499.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13004 2915..3211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13004.2499.1

>prot_H-canaliculatus_F_contig13004.2499.1 ID=prot_H-canaliculatus_F_contig13004.2499.1|Name=mRNA_H-canaliculatus_F_contig13004.2499.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
SSAPRPARSKSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYR
GSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSAGGKR*
back to top

mRNA from alignment at H-canaliculatus_F_contig13004:2915..3211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13004.2499.1 ID=mRNA_H-canaliculatus_F_contig13004.2499.1|Name=mRNA_H-canaliculatus_F_contig13004.2499.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=297bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13004:2915..3211- (Hapterophycus canaliculatus Oshoro5f female)
TCGAGCGCACCCCGCCCGGCACGCTCCAAATCGCAGGCTCAGAAGGTGCT GCAAAAGTCTCAGCAGATGGCGCGCAACGAGCACACCCTTGACTACGACG AGCGAAACCCCTTCGAGGTGGACTGCCAGGCGCTCAAGCCCATCTACAGG GGATCGCCGTCGTGCAAGTGCCCCTACTGTGCCTCCTCCTACCAGCCGTC CGCGAAGGGTAGTGTTTGCGTCACGTGCGGCCTGAGCCAGGTCGGAGTGG AGACGCTCGGGCTGGTCACCACCAGCTCAGCCGGCGGGAAGCGTTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13004:2915..3211-

>mRNA_H-canaliculatus_F_contig13004.2499.1 ID=mRNA_H-canaliculatus_F_contig13004.2499.1|Name=mRNA_H-canaliculatus_F_contig13004.2499.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13004:2915..3211- (Hapterophycus canaliculatus Oshoro5f female)
TCGAGCGCACCCCGCCCGGCACGCTCCAAATCGCAGGCTCAGAAGGTGCT
GCAAAAGTCTCAGCAGATGGCGCGCAACGAGCACACCCTTGACTACGACG
AGCGAAACCCCTTCGAGGTGGACTGCCAGGCGCTCAAGCCCATCTACAGG
GGATCGCCGTCGTGCAAGTGCCCCTACTGTGCCTCCTCCTACCAGCCGTC
CGCGAAGGGTAGTGTTTGCGTCACGTGCGGCCTGAGCCAGGTCGGAGTGG
AGACGCTCGGGCTGGTCACCACCAGCTCAGCCGGCGGGAAGCGTTGATCG
AGCGCACCCCGCCCGGCACGCTCCAAATCGCAGGCTCAGAAGGTGCTGCA
AAAGTCTCAGCAGATGGCGCGCAACGAGCACACCCTTGACTACGACGAGC
GAAACCCCTTCGAGGTGGACTGCCAGGCGCTCAAGCCCATCTACAGGGGA
TCGCCGTCGTGCAAGTGCCCCTACTGTGCCTCCTCCTACCAGCCGTCCGC
GAAGGGTAGTGTTTGCGTCACGTGCGGCCTGAGCCAGGTCGGAGTGGAGA
CGCTCGGGCTGGTCACCACCAGCTCAGCCGGCGGGAAGCGTTGA
back to top