mRNA_H-canaliculatus_F_contig13004.2499.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A6H5KXQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXQ0_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.720e-44 Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1
Query: 37 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSAGGKR 294
AQKVLQKSQQMARNEHTLDYDERNPFEVDCQ+LKPIYRG+PSCKCPYC S+Y SAKG+VCVTCGLSQ+GVETLGLVTTSSAGGKR
Sbjct: 807 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSCKCPYCGSAYPLSAKGTVCVTCGLSQIGVETLGLVTTSSAGGKR 892
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: D8LL95_ECTSI (Coatomer subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL95_ECTSI) HSP 1 Score: 162 bits (409), Expect = 3.630e-44 Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 1
Query: 37 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSAGGKR 294
AQKVLQKSQQMARNEHTLDYDERNPFEVDCQ+LKPIYRG+PSCKCPYC S+Y SAKG VCVTCGLSQ+GVETLGLVTTSSAGGKR
Sbjct: 1173 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSCKCPYCGSAYPLSAKGMVCVTCGLSQIGVETLGLVTTSSAGGKR 1258
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A835Z8J6_9STRA (Coatomer subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J6_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.970e-32 Identity = 62/90 (68.89%), Postives = 75/90 (83.33%), Query Frame = 1
Query: 13 RPARSKSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSA 282
R A + +AQK+LQKSQQMARNE LDYDERNPF +DC LKPIYRG+P KCPYC+SSY P++ +VC TCG+SQVGVETLGLVTT+++
Sbjct: 1137 RNAELRDKAQKILQKSQQMARNEVDLDYDERNPFVIDCATLKPIYRGAPVVKCPYCSSSYSPASDKTVCQTCGISQVGVETLGLVTTTAS 1226
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S3YID5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YID5_HETAK) HSP 1 Score: 112 bits (280), Expect = 1.100e-28 Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 1
Query: 28 KSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSA 282
K +AQKVLQKS+QM NEH LDYDERNPF VD L PIYRGSP CP+CAS YQP +C TC +SQ+GVET+GLV+ +A
Sbjct: 153 KLKAQKVLQKSEQMGSNEHALDYDERNPFAVDAADLVPIYRGSPEVTCPFCASHYQPRHANGLCATCNISQIGVETIGLVSQVAA 237
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: W7TRK7_9STRA (Coatomer subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRK7_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.180e-28 Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = 1
Query: 37 AQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSAG 285
AQKVLQKS+QMARNEH ++YD+R F +DC+ L PI RG+P KC YC SSY P +KG +CVTCG+SQVG+ETLGLVT++ +G
Sbjct: 1188 AQKVLQKSEQMARNEHAIEYDDRQAFVIDCRTLLPIPRGAPCLKCSYCGSSYTPESKGVLCVTCGISQVGLETLGLVTSAGSG 1270
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S2FV00_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV00_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.280e-28 Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 28 KSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSSA 282
K +AQKV+ KS++ RNEHTL YDERNPF++DCQA P+YRGSP KC YC S+YQP +C TCG++ +GVETLGL T S+
Sbjct: 221 KGKAQKVILKSEKEGRNEHTLQYDERNPFDIDCQAFVPVYRGSPVVKCAYCGSAYQPECTNKLCTTCGIALIGVETLGLPTGRSS 305
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S3GXR2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXR2_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.370e-27 Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 1
Query: 19 ARSKSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSS 279
A S+S+AQKVLQKS+Q RNE+T+DYDERNPF +DC LKP+Y+G+P KC YCA+ Y KG +C+ CG+S VG++T+GLVT S+
Sbjct: 410 ADSRSKAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLVTQSA 496
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S3GXJ7_9STRA (Coatomer subunit alpha n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXJ7_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.640e-27 Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 1
Query: 19 ARSKSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTSS 279
A S+S+AQKVLQKS+Q RNE+T+DYDERNPF +DC LKP+Y+G+P KC YCA+ Y KG +C+ CG+S VG++T+GLVT S+
Sbjct: 1167 ADSRSKAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLVTQSA 1253
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: F0YGR3_AURAN (Coatomer subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGR3_AURAN) HSP 1 Score: 111 bits (277), Expect = 2.330e-26 Identity = 51/83 (61.45%), Postives = 66/83 (79.52%), Query Frame = 1
Query: 28 KSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTS 276
+S+AQ V++ S+Q ARNEH L+YDERNPF+++C L+PIYRGSPS CPYC S + KGS+CVTC L+ +GVETLGLV+ S
Sbjct: 1136 RSRAQLVIRNSEQKARNEHALNYDERNPFDIECTDLQPIYRGSPSASCPYCRSVHSTKMKGSLCVTCNLAVIGVETLGLVSQS 1218
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Match: A0A7S2RES0_9STRA (Coatomer subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES0_9STRA) HSP 1 Score: 107 bits (268), Expect = 3.820e-25 Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 28 KSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRGSPSCKCPYCASSYQPSAKGSVCVTCGLSQVGVETLGLVTTS 276
K +AQKV+ KS+QMARNEH L YDERNPF++D PIYRGSP +C YC ++Y P K VC CGLS VGVET+GLVT S
Sbjct: 1170 KVKAQKVVLKSEQMARNEHQLHYDERNPFDIDSDTFLPIYRGSPVVRCAYCNAAYSPDMKNKVCRACGLSLVGVETIGLVTAS 1252 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13004.2499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13004.2499.1 >prot_H-canaliculatus_F_contig13004.2499.1 ID=prot_H-canaliculatus_F_contig13004.2499.1|Name=mRNA_H-canaliculatus_F_contig13004.2499.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp SSAPRPARSKSQAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALKPIYRback to top mRNA from alignment at H-canaliculatus_F_contig13004:2915..3211- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13004.2499.1 ID=mRNA_H-canaliculatus_F_contig13004.2499.1|Name=mRNA_H-canaliculatus_F_contig13004.2499.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=297bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13004:2915..3211- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13004:2915..3211- >mRNA_H-canaliculatus_F_contig13004.2499.1 ID=mRNA_H-canaliculatus_F_contig13004.2499.1|Name=mRNA_H-canaliculatus_F_contig13004.2499.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13004:2915..3211- (Hapterophycus canaliculatus Oshoro5f female)back to top |