mRNA_H-canaliculatus_F_contig1297.2467.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1297.2467.1
Unique NamemRNA_H-canaliculatus_F_contig1297.2467.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1297.2467.1 vs. uniprot
Match: D8LTK3_ECTSI (Metallophosphoesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTK3_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 4.700e-32
Identity = 89/161 (55.28%), Postives = 99/161 (61.49%), Query Frame = 3 
Query:  372 VAARLLSSHPVG*NKAQGCCACRYPLY---RLGLIHPIFLLLLL-QGYVSGLHKKDDTFLYVSEGAVGWGPRMRLLSTTEYTLVILRSPELSSSADTSKTESSRATGAAGVLFLLTFLYCLGYPVLRAFRREKERGVPRDASERRRQQGSRGVVMAGDYAT 842
            VA  LL+  P+   +A    +    L      G + P  +L  L QGYVSGLHKK DTFLYVSEGAVGWGPRMRLLSTTEYTLVILRSPEL S+ADTS            VL LL+ LYCLGYPV+RAFRR K      D   R   + S   V AGDYAT
Sbjct:  386 VATVLLAHEPIQVKEASKYSSVGLQLSGHTHGGQVFPYHVLAYLNQGYVSGLHKKRDTFLYVSEGAVGWGPRMRLLSTTEYTLVILRSPELFSNADTSDXXXXXXXXXXXVLLLLSVLYCLGYPVVRAFRRAKS--GQEDPEGREEWRSSAAAVAAGDYAT 544
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1297.2467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTK3_ECTSI4.700e-3255.28Metallophosphoesterase n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1297contigH-canaliculatus_F_contig1297:24524..27510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D8LTK3
Preferred nameTMPPE
EggNOG free text desc.Calcineurin-like phosphoesterase
EggNOG OGs2QRHG@2759,COG1408@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size2657
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1297.2467.1prot_H-canaliculatus_F_contig1297.2467.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1297 26336..26935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.6329799-UTR-H-canaliculatus_F_contig1297:24523..263351622929027.6329799-UTR-H-canaliculatus_F_contig1297:24523..26335Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1297 24524..26335 -
1696845652.8860877-UTR-H-canaliculatus_F_contig1297:24523..263351696845652.8860877-UTR-H-canaliculatus_F_contig1297:24523..26335Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1297 24524..26335 -
1622929027.6810584-UTR-H-canaliculatus_F_contig1297:26935..275101622929027.6810584-UTR-H-canaliculatus_F_contig1297:26935..27510Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1297 26936..27510 -
1696845652.9331403-UTR-H-canaliculatus_F_contig1297:26935..275101696845652.9331403-UTR-H-canaliculatus_F_contig1297:26935..27510Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1297 26936..27510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.6464555-CDS-H-canaliculatus_F_contig1297:26335..265511622929027.6464555-CDS-H-canaliculatus_F_contig1297:26335..26551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 26336..26551 -
1696845652.9043143-CDS-H-canaliculatus_F_contig1297:26335..265511696845652.9043143-CDS-H-canaliculatus_F_contig1297:26335..26551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 26336..26551 -
1622929027.6632414-CDS-H-canaliculatus_F_contig1297:26881..269351622929027.6632414-CDS-H-canaliculatus_F_contig1297:26881..26935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 26882..26935 -
1696845652.921102-CDS-H-canaliculatus_F_contig1297:26881..269351696845652.921102-CDS-H-canaliculatus_F_contig1297:26881..26935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1297 26882..26935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1297.2467.1

>prot_H-canaliculatus_F_contig1297.2467.1 ID=prot_H-canaliculatus_F_contig1297.2467.1|Name=mRNA_H-canaliculatus_F_contig1297.2467.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MRLLSTTEYTLVILRSPELSSSADTSKTESSRATGAAGVLFLLTFLYCLG
YPVLRAFRREKERGVPRDASERRRQQGSRGVVMAGDYAT*
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mRNA from alignment at H-canaliculatus_F_contig1297:24524..27510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1297.2467.1 ID=mRNA_H-canaliculatus_F_contig1297.2467.1|Name=mRNA_H-canaliculatus_F_contig1297.2467.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2987bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1297:24524..27510- (Hapterophycus canaliculatus Oshoro5f female)
CGGAGGGCAGGTGTTTCCTTATCACGTCTTGGCATACCTCAACCAGGTAA
AGCTAATTACCAGCGCCGGTCCGAGTTGGAGAGGCTCGCGCTCTTGTCCG
ACGCGTTCGCCTTCCGGGCTAGGAAGGAGGGGGTATTGTTGTCTGTGGGG
TTGCCGTCAGCGGTAAGGTCGCGGTTTTTGCCGAGGGCACGCGTGAGAGG
GTACGCGTGAGGGGACACAGCAAGGGTCGGCGTTGAGGTTGAGTTCAGAG
TCAGGCTCCAGGACGAAGATCATGGGCATTTGTGTTGCTACGATCGTGGA
GTTCACGTCACCCAGGAATTCAATGCCACACATCCTTGTTACAAAGACCA
AGACCTCGATGCGGGTCGCCCGTGGCCGCGCGTCTTCTATCATCTCATCC
CGTTGGCTAGAATAAAGCTCAAGGCTGCTGTGCCTGCCGGTATCCTCTGT
ATCGGCTGGGGCTGATTCACCCTATTTTTTTGTTGTTGTTGCTGCAGGGA
TACGTCTCGGGTCTGCACAAAAAGGACGACACCTTCCTCTACGTCTCCGA
GGGCGCGGTAGGCTGGGGGCCGAGGATGCGCCTCCTTTCGACCACAGAGT
ACACCCTTGTGATCCTGAGGTCCCCTGAGGTACGTAATCGGCATTTCGAA
GGGTTGGATCTTGACCCAACCTTGGGCGGTGTTACCGGTATATGACCGCC
CGCCACGTGAATGCCGCTTTCCGTAAAAAATGCGCGTTACATTCAAGTCC
AGGAAGAGGAGGCGTGCCTACTGTTTGTCGACAGTCGACAAAAGAGCAAG
TGCACTCACTCGCCCATGTTGTTTTCTGCTGTTGGGGCACGGGGCTTACG
CTAGCGGCCTCATTTCTCTCGTGCCATCTTATTCCCCAAAACAATAAAAA
GAACGAGCGCCATTCATAGTGATATGTACCCCCCCCTCCCCTTCTGTACG
CGCTTGCAGCTTTCCTCGAGCGCTGATACGAGCAAGACCGAATCGTCCCG
AGCAACCGGCGCTGCAGGCGTTCTCTTCTTGCTGACCTTTCTTTACTGCT
TGGGGTACCCCGTGTTGAGGGCCTTTCGAAGAGAGAAGGAAAGGGGTGTA
CCTCGGGATGCATCAGAGCGACGGCGGCAGCAAGGTAGTAGGGGCGTTGT
TATGGCCGGCGATTACGCTACCTGATGATGGCTTCTTCGAGTAAGTGCTG
TTCATTGTGACGAGCCTTTGTTCATTTTCGGGGATAGCGGGAAAATTAGA
GATTAGGTTCCTGGAGGCGTTCAAAGATATTAGCGCACGAGGGATACGGG
GAGAGGTGGCAGATAAAACCATTTGCGTTTATCGGTCGATGCGAAGACGA
CAAATAGTGATCGAGGTGTTGTTGATAGTGGTAGTTGGCGAAAGATTCTT
ACCTTCATGTGAATTTTACCGGAAGAGCATCGTTCAGGAGAAAGTGCCAT
GTGGAAAATTGCCTTTCTCAAATTTGTGAAAGCTTTGGCTACCTCTACAG
GTGTTGATTGGCGTTGAGTTTCGCGTGCTGATGGGGGAGACACTCCACTG
TTCCACGAGGGTAGAAGTTCCGATTGTTCGACAAGAGCACACAAAACACA
TAGAACACAGAGCACGCGTGAGCTCCCATACGTACTGTAGAAACTGTTGC
AGGAGCGCGTCACGGCTTTGTCTCCACTCCAGCAAATGCCTTCGCCGTTT
CGGAAGTTGGCAGATAGTGTCGTTCACTTTTTGGTTTTGTAGTTTATCGA
CGTACCAGGTGCCTTGTGGGGACGTACTACGCTTGCGACAGCACTTTGTA
GGAACGTTGTGGGCTTGAGCGTTGTGTCATAGACCGCACGGACCGCCTTC
ATCTGCGAGGGAGCGATGGTGTTGGCTTTTTTGCCCCGCAAACAACGCCT
CTTGCAGCAGCACGAGCATTCTATGGCGAGATTCGTTTGCTGTTAGCGCT
GATAGGCTGTGACGTAACTAGCGCTCGTTGAATTTTGCCTGCGGTTTATT
CGGTTTTTGGTATCAATAGCGCCAGCTGTTTTTTACCTTTTGCCACCCTT
TTTCATCGTGTAGTTGTGCATGGTTTCTTCCTTGACGTATCAGCCCAATG
TAAAGTGTACCAGTACCACGTCACGGCAACCATCTGCCCCCATGTTCTTC
GGGTATCGGCAGCCTACGTAAATGTGCACGCTTCGTACGCTCATCTCGTT
TCATTTCCTGTGTTCATTGGCTTCTCCTATTCCTCCTCTTGTTTTTTGCG
GTATACTGGTGAAATGTGGAGAGTACACCTGTAGCACGAGCTATACTTTC
CTTCTCTCGTCTATTTTGCCTGACCGATGAGAACCTGGCCCGGAATAACC
CCGGCGTTACAGGGGTACCAAGATAGAATCAGGGAATGTGCACGTACGCA
CCCCAGGCTGGTGAGGGTGATTTTCCACTTCTGCAAGTATGTTTGTCTTT
ATACAGTACCTCACATAGCGCGTGGAGGGGAGCGGGGGGCTCCAGACTAT
CTGTCCTTGGTTTTTATCGCTTTGCTGTCGGGTCCAGTTTGTTTGAGTTT
ACCTTTTTTGGGGCAAGTCAGCCTGTGACCACGGGAATCGACCGCGTCAT
TGTTCGATCAGTGCGGACAGAAGGAGGTGCTGAGTAGAGACATCGGGACG
GCTTTTGATGTGAAGACAAAAACATTTGACTTCAATCGCTTTGTCCATGA
CAATTGACTTCAATCGTTTTGTCCATGACATTTTCTCCGGCTGACGTACG
TGAATGTTCGATGGTGACCCAAACGCACCTTTCTTTATTGTGTTACCCGC
TATAGTCGCGTCGGGAGTTTTTTTCATGCTTCCGCAAGGTGCGGGTTTGG
CTTCTTGCGCGGCAAAGGTGACGCCGTCGAAACAGCCTCCAGGTCCGTGC
CGCGTCTCAGTACTTGCAACGTTCCGTGTTGAGATTCGAGAGACAAGGAC
TCCTGTGTCTTTTCGTCACCATTGTTCGATTATTTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1297:24524..27510-

>mRNA_H-canaliculatus_F_contig1297.2467.1 ID=mRNA_H-canaliculatus_F_contig1297.2467.1|Name=mRNA_H-canaliculatus_F_contig1297.2467.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1297:24524..27510- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCCTCCTTTCGACCACAGAGTACACCCTTGTGATCCTGAGGTCCCC
TGAGATGCGCCTCCTTTCGACCACAGAGTACACCCTTGTGATCCTGAGGT
CCCCTGAGCTTTCCTCGAGCGCTGATACGAGCAAGACCGAATCGTCCCGA
GCAACCGGCGCTGCAGGCGTTCTCTTCTTGCTGACCTTTCTTTACTGCTT
GGGGTACCCCGTGTTGAGGGCCTTTCGAAGAGAGAAGGAAAGGGGTGTAC
CTCGGGATGCATCAGAGCGACGGCGGCAGCAAGGTAGTAGGGGCGTTGTT
ATGGCCGGCGATTACGCTACCTGACTTTCCTCGAGCGCTGATACGAGCAA
GACCGAATCGTCCCGAGCAACCGGCGCTGCAGGCGTTCTCTTCTTGCTGA
CCTTTCTTTACTGCTTGGGGTACCCCGTGTTGAGGGCCTTTCGAAGAGAG
AAGGAAAGGGGTGTACCTCGGGATGCATCAGAGCGACGGCGGCAGCAAGG
TAGTAGGGGCGTTGTTATGGCCGGCGATTACGCTACCTGA
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