mRNA_H-canaliculatus_F_contig1294.2447.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1294.2447.1
Unique NamemRNA_H-canaliculatus_F_contig1294.2447.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: D7FTU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU0_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 4.270e-52
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 1
Query:  331 RRSNPRIRPAADLWGPYKRERYYFEVVECFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFA 666
            RRSN RI PAADLWGPY+ ERYY+EV+ECFRR+ LTG AVF+ PDSSAQIAIVLLLA  FMV+SE+LSPFARPVEMWLYRAGHY+VFASMYLALLLRVDVSDE  +SQ VFA
Sbjct:   31 RRSNSRITPAADLWGPYRPERYYYEVIECFRRIALTGFAVFIYPDSSAQIAIVLLLAVVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDEGDQSQGVFA 142          
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.800e-47
Identity = 89/115 (77.39%), Postives = 101/115 (87.83%), Query Frame = 1
Query:  325 DERRSNPRIRPAADLWGPYKRERYYFEVVECFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFAG 669
            ++R S   +RPAADLW PYK   YY+EVVECFRR+ LTG AVF+ PDSSAQ+AIVLLLA  FMV+SE+LSPFARPVEMWLYRAGHY+VFASMYLALLLRVDVSDER +SQEVF+G
Sbjct:  900 EDRESQAELRPAADLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSG 1014          
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 6.110e-47
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 1
Query:  325 DERRSNPRIRPAADLWGPYKRERYYFEVVECFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFAG 669
            ++R     +RPAADLW PYK   YY+EVVECFRR+ LTG AVF+ PDSSAQ+AIVLLLA  FMV+SE+LSPFARPVEMWLYRAGHY+VFASMYLALLLRVDVSDER +SQEVF+G
Sbjct:  881 EDREGQAELRPAADLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSG 995          
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 8.150e-45
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 1
Query:  349 IRPAADLWGPYKRERYYFEVVECFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFAG 669
            ++PAADLW PYK   YY+EVVECFRR+ LTG AVF+ PDSSAQ+AIVLLLA  FMV+SE LSPFARPVEMWLYR GHY+VFASMYLALLLRVDVSDER +SQEVF+G
Sbjct:  902 LKPAADLWEPYKPSTYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSG 1008          
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.510e-37
Identity = 87/155 (56.13%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  322 GDERRSNPRIRPAADLWGPYKRERYYFE---------------------------------------VVECFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFAG 669
            G ERR+   ++PAADLW PYK   YY+E                                       VVECFRR+ LTG AVF+ PDSSAQ+AIVLLLA  FMV+SE LSPFARP+EMWLYR GHY+VFASMYLALLLRVDVSDE  +SQEVF+G
Sbjct:  101 GRERRA--ALKPAADLWEPYKPSTYYYEAAQPPPYLDKLPRRLSSQCLPCPPASADMPPSATPTLEKVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPIEMWLYRTGHYVVFASMYLALLLRVDVSDENNQSQEVFSG 253          
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 4.150e-33
Identity = 63/106 (59.43%), Postives = 86/106 (81.13%), Query Frame = 1
Query:  349 IRPAADLWGPYKRERYYFEVVECFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFA 666
            ++P  DLW PYK  RYYFEVVEC RR+ LTGLAVF+ P S+AQ+A+ ++ A FF+ +S+VLSPFA P++ WLYR+G +++F SM+L LLL+VD SDE ++SQE+FA
Sbjct:  260 LQPMRDLWAPYKPRRYYFEVVECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFA 365          
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.380e-31
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 1
Query:  349 IRPAADLWGPYKRERYYFEVVECFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFA 666
            ++P  DLW  YK  RYYFEV+EC RR+ LTGLA FL PDS+AQ+AI ++LA  FM +S+VLSPFA P + WLYR G +I+F SMYLALLL+VD SDE ++SQ  FA
Sbjct:  936 LQPMRDLWSSYKPRRYYFEVLECGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFA 1041          
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: D7G021_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G021_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.110e-30
Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 1
Query:  331 RRSNPRIRPAADLWGPYKRERYYFEVVECFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFA 666
            R  N  + PA  LW  YK E +YF ++EC RR+ LTGL VF+ P+S+AQ+AI+LLLA  F+VLSEVL PF +P+E WLY +G  ++FASMY ALLL+VDVS+E ++SQ  F+
Sbjct:  169 RAENADLEPAKALWESYKGETWYFIIIECVRRIALTGLGVFINPNSAAQVAILLLLAFGFLVLSEVLDPFEKPIETWLYLSGSCVIFASMYAALLLKVDVSNENSESQTAFS 280          
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.980e-30
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 1
Query:  349 IRPAADLWGPYKRERYYFEVVECFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFA 666
            +RP  DLW PYK  RY++E+VEC RR+ LTGLAVFL P ++AQ+AI +  A   +V+ EVL+PF  P++ WLYR+G  +VF SMYLALLL+VD SDE ++SQ+VFA
Sbjct:  235 LRPMKDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFA 340          
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Match: A0A6H5L4E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.820e-30
Identity = 65/108 (60.19%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  349 IRPAADLWGPYKRERYYFEVVE--CFRRVTLTGLAVFLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASMYLALLLRVDVSDERAKSQEVFA 666
            ++   DLW PYK  RYYFEVVE  C RR+ LTGLA FL P S+AQ+AI ++LA  FM +S+VL PF  P   WLYR G +I+F SMYLALLL+VDVSDE  +SQ  FA
Sbjct:   87 LQSMRDLWAPYKPHRYYFEVVEVECGRRIVLTGLAAFLLPKSAAQVAIEVVLAAIFMAVSDVLPPFVDPFGAWLYRIGGWIIFFSMYLALLLKVDVSDEDNQSQAAFA 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1294.2447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTU0_ECTSI4.270e-5282.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTT9_ECTSI1.800e-4777.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE6.110e-4776.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI8.150e-4579.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0E1_9PHAE1.510e-3756.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF7_ECTSI4.150e-3359.43Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5JWI3_9PHAE1.380e-3162.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G021_ECTSI2.110e-3056.25Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5KHA3_9PHAE2.980e-3058.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4E3_9PHAE5.820e-3060.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1294contigH-canaliculatus_F_contig1294:11491..15120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue1.7e-43
Seed eggNOG ortholog2880.D7FTT9
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPectin lyase fold/virulence factor
Ec32 orthologEc-25_001520.1
Exons5
Model size945
Cds size945
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1294.2447.1prot_H-canaliculatus_F_contig1294.2447.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1294 11491..15120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.9130983-CDS-H-canaliculatus_F_contig1294:11490..116931622929024.9130983-CDS-H-canaliculatus_F_contig1294:11490..11693Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 11491..11693 +
1696845651.6169567-CDS-H-canaliculatus_F_contig1294:11490..116931696845651.6169567-CDS-H-canaliculatus_F_contig1294:11490..11693Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 11491..11693 +
1622929024.9438407-CDS-H-canaliculatus_F_contig1294:13502..135791622929024.9438407-CDS-H-canaliculatus_F_contig1294:13502..13579Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 13503..13579 +
1696845651.6303926-CDS-H-canaliculatus_F_contig1294:13502..135791696845651.6303926-CDS-H-canaliculatus_F_contig1294:13502..13579Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 13503..13579 +
1622929024.9633741-CDS-H-canaliculatus_F_contig1294:13628..137531622929024.9633741-CDS-H-canaliculatus_F_contig1294:13628..13753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 13629..13753 +
1696845651.643369-CDS-H-canaliculatus_F_contig1294:13628..137531696845651.643369-CDS-H-canaliculatus_F_contig1294:13628..13753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 13629..13753 +
1622929024.9785333-CDS-H-canaliculatus_F_contig1294:14239..144921622929024.9785333-CDS-H-canaliculatus_F_contig1294:14239..14492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 14240..14492 +
1696845651.6533952-CDS-H-canaliculatus_F_contig1294:14239..144921696845651.6533952-CDS-H-canaliculatus_F_contig1294:14239..14492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 14240..14492 +
1622929024.9978378-CDS-H-canaliculatus_F_contig1294:14833..151201622929024.9978378-CDS-H-canaliculatus_F_contig1294:14833..15120Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 14834..15120 +
1696845651.6625347-CDS-H-canaliculatus_F_contig1294:14833..151201696845651.6625347-CDS-H-canaliculatus_F_contig1294:14833..15120Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1294 14834..15120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1294.2447.1

>prot_H-canaliculatus_F_contig1294.2447.1 ID=prot_H-canaliculatus_F_contig1294.2447.1|Name=mRNA_H-canaliculatus_F_contig1294.2447.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=315bp
AATATTTEAGGRLFGSRRDCHQEPAHICGPAAGVRGLRDGVPHRLRRFCV
RHAGRRLLVPARRLRPRMRNAAPQHLPDLRRPHGCPLPLRNSVQEETGEN
DEEGVGGGDERRSNPRIRPAADLWGPYKRERYYFEVVECFRRVTLTGLAV
FLTPDSSAQIAIVLLLATFFMVLSEVLSPFARPVEMWLYRAGHYIVFASM
YLALLLRVDVSDERAKSQEVFAGRESREPQRGSRPSDNPTERSTGGRRGG
GREGMLAEDPFDDDNDDDAGDALYYRNPMYMEDETEGPEERRGTNDGISK
GGYRTAYLGFSVGRG
back to top

mRNA from alignment at H-canaliculatus_F_contig1294:11491..15120+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1294.2447.1 ID=mRNA_H-canaliculatus_F_contig1294.2447.1|Name=mRNA_H-canaliculatus_F_contig1294.2447.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1294:11491..15120+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGCAACAGCAACTACGACAGAGGCAGGCGGACGCCTCTTCGGAAGCCG TCGTGACTGTCATCAGGAACCGGCACATATCTGTGGGCCTGCTGCTGGTG TTCGTGGTCTACGCGACGGTGTCCCACACCGTCTTCGACGTTTTTGTGTG CGACATGCTGGACGACGGCTCCTCGTACCTGCGCGCCGACTACGGCCTCG AATGTGAGCTCATGTCTGGAGCAACGGCCAACACTTTCGTTATGAACCCC CGCTATTGCTTGCGGGGGGGGCGGAGGTGTTAGCAGTCACAGGTCGCGAA TGCGACCGCTAGAATAAGTTGTTCCACAACCAGAGTCGGAATTGAAACCC TCAAAACGCAAAAGATTGATCGAAAAGTCATGAAGCTCGTGCATCATCTG TCGACGGGGGTGCAGGACTCGAGCAAAGATGGCCGCGAACATCTCCCAGA ATAGGGTTGCGCCCCGTCTGTGAAAATCGGTACCGGAAAGACAATCAGTC TTTGGGGGATCCTCCCGGAATCCTCCCGGGAGAACCGCGAGAATTTTGCG CCGGTCCTCCGATGACCCCGGAACCATTTTCCCGGGAGAACCGCGGTGGT ACGTAGTTGGCACTGTTACGCGTACGGTTCTCAGTTCTCAGGCGACATGG TGATCTGGGAGGGAGTTGCCCCATTTAAATTCGCAAGATGAACCAAAAAT CGAAATGTTGGTAGATACCTTGTCGTCCTTGTCTTCCCCGTGAGAATCCC TTCTACTTCCATCAGCTATCCGCTATCCGGACCTCTCCGTTTAATTGGGG AATTCCATTCCTTCGTTTGCCCACATTTCTCATATCACGGTGGTAATATT GCCTCCTCGCGTGTTCACGGGCTCAAATACCGACAAACAAATACTAGCGC GGAACAGTTCCTCTGCCGTGAGAGTCAAATGAATAAGGGCCGACAGGTCA CAGTGAGACGCGCAACGCACACGACGAGAGCCTTAGCAAGAGGATATTGA AAAGTCCGCCGTTGTGGATCCCTTGTAGAGCCCACAGCCCCTCCTTCGAC ACGCTTTGTCAGCGAGAAATCAATTGGGCTTACAGAATCGAAGATCGTAG GCAAGGGGAGAAACAACTCTCCCAATTCACTCTTTGAACTCTATATGTAT TAAGCCCAGAATGTGCCTTCGAAACTTCGTCCGCTATGCAGCGAAAATCA CAAGGGCAAAAGCATTGCCATTCGCCATCAACAGCTCGACAAGAAAATAG GGGTTTCCAGAAGGTGGTAGGGGCGGGAGGAGTGTGCGGTGGAAGTGTGC TGTGCGGTTCACCAAGCGCGACGAGGTTACCGTTGTCAGATTGCCTCTGA GTTTTACAGTCAGCGCCAACTGTAACTCGGTGGTAAAGCATGTCTCTGAC AACCGTGGGGCATGTTGATGGGGGGCATGGTGTATCATTTTCTTGGGAGA ACCGCGGTACCAGGGTCCCGGGAGGATCGGCACTAAAATACCGCGGGAAT TTGGGTCACTCCCGGAACCATCCCAGGACTGAGGAGTGACAGGAGAACTA CCGAGCTCCGGGACAACAGAAAGACGGGGAGCAATCCTATCCAAGAACCA CATGGGAGTTTATCGGGTTATTTCCGACGTTCCTCGAGCGTGTCAAAGGC CAAGCCAGGCGTTTCCGTCGCCCGCGACGTCCCCCTCATGTCCCTGATTA CCTTCGTGTACGCCGCGACGCCGGGTCACGAAGGGTTCAAGACTTAGTTC GCACCCGAGGTCCGACGTTCGCCTTGTGCAAAACAATGGGCAGCAGCGAA ATTGTTGACGAGTTCACCCAGCTCTGAGACGAAGACCGCTAGACATCGAT TCATACCTCGACCTCTACGTGCACCGCTGTCATTAGGGTCATGGTTTGCA CCGCCTCCGGCACACACACACACACAACACGCGAAGCTGATGTCTCCGCG TCGATTCTACCTGGCTGAAACGACACATGCCGAACCACTGACGCACCTTG TCTCTCTCACAGGCGGAACGCGGCTCCACAACATTTACCGGATCTACGCC GCCCTCATGGTTGCCCTCTACCCCTTCGGAATTCCGTTCGCTCTCGGATG GTGGCTCTTCCGTCACCGGCAAGACCTTCGGGGCCGAGAGGAAGAAACAG GAGAGAATGATGAGGAAGGTGTTGGTGGCGGCGACGAGAGGAGAAGCAAC CCGCGGATCAGACCTGCCGCCGACCTCTGGGGCCCGTACAAGCGGGAGCG ATACTACTTCGAGGCGAGCTGAATCCCGTTACCATTCCGTCGGTGGAGCC ATCATGTATCACGCTTGTCCTGCTCAAGTTCTTTAGTTTTCACGGTTAGA CGGTCGCTTTCTTCATGGGATATGGTGTCGATAGTACAACGCTAACCACC CTGCGTACAACGTTCCCCGATCCACCGGTGCGGGACCGCTTGGTTGTTGG AAAAAGAACCCAGTTTTAGCTCAACAATTTCTTTCGTCGCCTCTTCCTCC CCCTCCTCCCTCCATCTTCACCCTTTTGCCTATGCCCCTGTCTACAACCG CCTCGCCGTCTCTCTCTCTGTCTCTCTCTGTCTCTGTCTCTGTCTCTGTC TCTCCCTCTCTCTCTCTCTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC TCTCTCTCTCGCCCGCTTTCTGACCTTGTCGCGAACCAACGGCGACAAGG TGGTGGAGTGCTTCCGCCGCGTTACCCTCACCGGACTAGCGGTCTTCCTT ACCCCGGACAGCTCCGCCCAGATCGCGATAGTCCTCCTCCTTGCTACCTT CTTCATGGTCCTGTCCGAGGTGTTGTCACCCTTCGCGCGCCCGGTCGAGA TGTGGCTGTACCGCGCTGGGCACTACATCGTCTTCGCTAGCATGTACCTG GCGTTGCTCTTGCGGGTTGACGTCTCGGACGAGCGAGCCAAGAGCCAAGA GGTGAGTCGAAGGAGGGCGAGAGATCGGGGAAATAATCGCTGCGAACTCC TTTTTTTTTGTGTAGAGAGACGCAGTGAGCTTAATGGAAGAAGGAAAAAG ACCCCTGTTGGACAGGAGTCAAGGAATTTGGTCCTTGTGTTTCATGCTTG TCGCAGAGATTCCGCTATTGTTGGTTTGTTGCCGCCTCGTTGTATTTCTG TGTTCGCTCCAAGTTTTCTCTCTGACGCGTCGCCTGATCTCCGAGCAACG TTTGTCTTGACATGCGAAATAAGGCCTTTGCCGGGGTCATCGTGGTTGCG AACGGAGTCATGATCCTGGTCGTTTTCGGCCAGGGTCTCCTCATCTTCGC CGGGAGGGAAAGTCGAGAACCTCAGCGAGGTTCTCGGCCGAGCGACAATC CCACAGAGAGATCTACGGGCGGGCGGAGAGGCGGCGGCCGCGAAGGTATG CTTGCCGAAGACCCTTTCGACGACGACAACGACGACGACGCCGGAGATGC GTTGTACTACCGCAACCCGATGTACATGGAGGACGAAACGGAAGGGCCCG AAGAAAGACGCGGTACAAACGATGGCATCAGCAAAGGAGGCTACCGCACC GCCTACTTGGGCTTTTCAGTTGGACGAGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1294:11491..15120+

>mRNA_H-canaliculatus_F_contig1294.2447.1 ID=mRNA_H-canaliculatus_F_contig1294.2447.1|Name=mRNA_H-canaliculatus_F_contig1294.2447.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1890bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1294:11491..15120+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGCAACAGCAACTACGACAGAGGCAGGCGGACGCCTCTTCGGAAGCCG
TCGTGACTGTCATCAGGAACCGGCACATATCTGTGGGCCTGCTGCTGGTG
TTCGTGGTCTACGCGACGGTGTCCCACACCGTCTTCGACGTTTTTGTGTG
CGACATGCTGGACGACGGCTCCTCGTACCTGCGCGCCGACTACGGCCTCG
AATGCAGCAACAGCAACTACGACAGAGGCAGGCGGACGCCTCTTCGGAAG
CCGTCGTGACTGTCATCAGGAACCGGCACATATCTGTGGGCCTGCTGCTG
GTGTTCGTGGTCTACGCGACGGTGTCCCACACCGTCTTCGACGTTTTTGT
GTGCGACATGCTGGACGACGGCTCCTCGTACCTGCGCGCCGACTACGGCC
TCGAATGCGGAACGCGGCTCCACAACATTTACCGGATCTACGCCGCCCTC
ATGGTTGCCCTCTACCCCTTCGGAATTCCGTTCGCGGAACGCGGCTCCAC
AACATTTACCGGATCTACGCCGCCCTCATGGTTGCCCTCTACCCCTTCGG
AATTCCGTTCAGGAAGAAACAGGAGAGAATGATGAGGAAGGTGTTGGTGG
CGGCGACGAGAGGAGAAGCAACCCGCGGATCAGACCTGCCGCCGACCTCT
GGGGCCCGTACAAGCGGGAGCGATACTACTTCGAGAGGAAGAAACAGGAG
AGAATGATGAGGAAGGTGTTGGTGGCGGCGACGAGAGGAGAAGCAACCCG
CGGATCAGACCTGCCGCCGACCTCTGGGGCCCGTACAAGCGGGAGCGATA
CTACTTCGAGGTGGTGGAGTGCTTCCGCCGCGTTACCCTCACCGGACTAG
CGGTCTTCCTTACCCCGGACAGCTCCGCCCAGATCGCGATAGTCCTCCTC
CTTGCTACCTTCTTCATGGTCCTGTCCGAGGTGTTGTCACCCTTCGCGCG
CCCGGTCGAGATGTGGCTGTACCGCGCTGGGCACTACATCGTCTTCGCTA
GCATGTACCTGGCGTTGCTCTTGCGGGTTGACGTCTCGGACGAGCGAGCC
AAGAGCCAAGAGGGTGGTGGAGTGCTTCCGCCGCGTTACCCTCACCGGAC
TAGCGGTCTTCCTTACCCCGGACAGCTCCGCCCAGATCGCGATAGTCCTC
CTCCTTGCTACCTTCTTCATGGTCCTGTCCGAGGTGTTGTCACCCTTCGC
GCGCCCGGTCGAGATGTGGCTGTACCGCGCTGGGCACTACATCGTCTTCG
CTAGCATGTACCTGGCGTTGCTCTTGCGGGTTGACGTCTCGGACGAGCGA
GCCAAGAGCCAAGAGGTCTTCGCCGGGAGGGAAAGTCGAGAACCTCAGCG
AGGTTCTCGGCCGAGCGACAATCCCACAGAGAGATCTACGGGCGGGCGGA
GAGGCGGCGGCCGCGAAGGTATGCTTGCCGAAGACCCTTTCGACGACGAC
AACGACGACGACGCCGGAGATGCGTTGTACTACCGCAACCCGATGTACAT
GGAGGACGAAACGGAAGGGCCCGAAGAAAGACGCGGTACAAACGATGGCA
TCAGCAAAGGAGGCTACCGCACCGCCTACTTGGGCTTTTCAGTTGGACGA
GGGTCTTCGCCGGGAGGGAAAGTCGAGAACCTCAGCGAGGTTCTCGGCCG
AGCGACAATCCCACAGAGAGATCTACGGGCGGGCGGAGAGGCGGCGGCCG
CGAAGGTATGCTTGCCGAAGACCCTTTCGACGACGACAACGACGACGACG
CCGGAGATGCGTTGTACTACCGCAACCCGATGTACATGGAGGACGAAACG
GAAGGGCCCGAAGAAAGACGCGGTACAAACGATGGCATCAGCAAAGGAGG
CTACCGCACCGCCTACTTGGGCTTTTCAGTTGGACGAGGG
back to top