mRNA_H-canaliculatus_F_contig12803.2336.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12803.2336.1
Unique NamemRNA_H-canaliculatus_F_contig12803.2336.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: D8LGI0_ECTSI (SFM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI0_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 2.770e-109
Identity = 185/213 (86.85%), Postives = 196/213 (92.02%), Query Frame = 1
Query:    1 RELGQPIRLFSENVADIRERLRRFIAAAEMDDEETEKIKDMVAPKPSFLPRRMQMGGE-AAGAXXXXXXXXXATPAAKKAEVVYTPASDGLLEARAAIATMSFGRAKGRLIGAKRRRGTPEEASALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPGAYSSEKTLLA 636
            R+LGQP+RLFSENVADIRERLRRFIAA+EM+DEE EKI+ MVAPKPSF+PR+MQMGGE AAGA XXXXX     PAAKK EVVYTPASD LLEARAAIATMSFGRAK RL GAKRRRGTPEE SA+D++A ET STMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHP AYSS+KTLLA
Sbjct:  118 RQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGAAXXXXXP----PAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEETSAVDRRAVETFSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPEAYSSDKTLLA 326          
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: A0A835YL38_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL38_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.850e-38
Identity = 96/219 (43.84%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    1 RELGQPIRLFSENVADIRERLRRFIAAAEMDDEETEKIKDMVAPKPSFLPRRMQMGGEAAGAXXXXXXXXXATPAAKKAEVVYTPASDGLLEARAAIATMSFGRAKGRLIGAKRRRGTPEEASALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPGAYSSE-KTLLASGAADK 654
            R LGQPIRLFSE +AD+RERLR  +A  ++D E    +  ++A   +  P +        G                KAEVVYT A+  L+EAR  IA+ SF  A  RL  AKRRR     ASA D  A    + +K L IN S   D+RPLSA++VSPDG  VAS +W+ + KLW++++L    V RGH ER+TGV WHP A +     LL + AADK
Sbjct:   95 RRLGQPIRLFSETLADVRERLREHLAQLQLDGEGDAAVASLLA---AAEPAKAAAAAVEEG----------------KAEVVYTVAAAPLIEAREVIASYSFAAAPQRLARAKRRRLDSAVASAEDAAAAAACTRLKGLVINVSAVGDERPLSAVRVSPDGSLVASAAWSGVAKLWNMKDLRPCGVFRGHKERLTGVAWHPRALTEAGPALLVTAAADK 294          
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: A0A7S2WFU9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFU9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 8.410e-35
Identity = 94/222 (42.34%), Postives = 123/222 (55.41%), Query Frame = 1
Query:    1 RELGQPIRLFSENVADIRERLRRFIAAAEMDDEETEKIKDMVAPKPSFLPRRMQMGGEAAGAXXXXXXXXXATPAAKKAEVVYTPASDGLLEARAAIATMSFGRAKGRLIGAKRRRGTPEEASALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRG---HSERVTGVTWHPGAYSSEKT--LLASGAAD 651
            R +GQP+RLF EN+ADIRERLR FIA  ++D +E           P  L   M+     A                KKA+V Y+ AS  L+EAR  I   S      R+ G KRRR + EE + +D+ A ET   M+ LAI++SQFAD+RPL A + +P    VAS S    +KLWD E+LE + +L G   H+ER TG+ WHP A+ S     LLAS +AD
Sbjct:   83 RSIGQPVRLFGENLADIRERLREFIARRQLDGDEA----------PGMLTEPMEEDKPKAPE--------------KKADV-YSEASADLVEARQRIFDYSSTHTVERMAGVKRRRESAEERARVDESAKETYKDMRALAISASQFADERPLGACRCAPHADVVASASLAPYIKLWDTESLESKGILGGPGAHTERATGLAWHPQAFGSMDAAPLLASSSAD 279          
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: M4B2G3_HYAAE (SFM domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2G3_HYAAE)

HSP 1 Score: 114 bits (284), Expect = 1.100e-25
Identity = 81/229 (35.37%), Postives = 118/229 (51.53%), Query Frame = 1
Query:    1 RELGQPIRLFSENVADIRERLRRFIAAAEMDDEETEKIKDMVAPKPSFLPRRMQMGGEAAGAXXXXXXXXXAT---PAAKKAEVVYTP-ASDGLLEARAAIATMSFGRAKGRLIGAKRRRG--TPEEASALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPGAYSSEKT------LLASGAAD 651
            R+LG+PI LF E  AD RERLR  ++  +++ EE   ++ +          + ++  +AAG          AT     A ++++ Y P  ++ + + RA I   +      RL   ++ R     E A  +DQ A    S  + +A  +SQ  D RP+SA++ S DGG VA+GSW+ LVK+WD  N    KV RGH +RVTGV WHP    SE T       L SG+AD
Sbjct:   97 RQLGEPITLFGERPADRRERLREILSRLDVEAEENGYVRQVFGDI-----EKQEIAADAAGDERAAGAGETATGKLSRAHESQLFYVPLTNEKMKKVRATIFAHASSATGARLKRERQERSMSAEERARTVDQYAAGLYSAAQKMANVASQNGDVRPISAVRFSADGGHVATGSWSSLVKVWDATNANEVKVFRGHEDRVTGVAWHPTKAFSEMTDSGDSVCLCSGSAD 320          
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: A0A7S2CJH2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJH2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.280e-22
Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  244 VYTPASDGLLEARAAIATMSFGRAKGRLIGAKRRRGTPEEASALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVL--------RGHSERVTGVTWHPGAYSSEKT--LLASGAAD 651
            VY+ A+  LL AR  ++  SF  +  RL G KRRR +   + A++ +A    +  + L I++SQ ADDRPL+A++ SP GG +ASGS    VKLWD  +L+ +  L        R  +ER TG+ WHP AY +  T  LLASG+AD
Sbjct:   14 VYSEATPELLTARDCLSAFSFKASAERLRGLKRRRDSEAASDAVNSEAEALYTDTEALFISASQLADDRPLTAVRCSPQGGVLASGSLAHYVKLWDATSLQPKGTLSAAEGSSERAQTERTTGLAWHPHAYGAASTTPLLASGSAD 159          
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: A0A8J4LV17_9CHLO (SFM domain-containing protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4LV17_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 1.230e-20
Identity = 80/224 (35.71%), Postives = 108/224 (48.21%), Query Frame = 1
Query:    1 RELGQPIRLFSENVADIRERLRRFIAAAEMDDEETEKIKDMVAPKPSFLPRRMQMGGEAAGAXXXXXXXXXATPAAKKAEVVYTPASDGLLEARAAIATMSFGRAKGRLIGAKRRRGTPEEAS-ALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKV--LRGHSERVTGVTWHP----GAYSSEKTLLASGAAD 651
            R+LG+P+ LF E   + RERL+R IA     D E E            LP   Q+  E                 A + E+ YT   D L  AR A+A  S  RAKGRL+GAKRRR  PE    A D QA    + ++ +   SS+  D RP+S  Q SPDG ++A+  W  ++ LW +     R    +   + R+TGV WHP    G++S     LAS A+D
Sbjct:   48 RQLGEPVTLFGEREMERRERLKRIIAQR---DGEVE----------LDLPTTEQLLSE---------------EVAVQKELFYTEGPDELRTARLALARFSLMRAKGRLLGAKRRREDPEALQVAADTQAA-AAAAVRTIVQQSSELGDTRPVSHCQFSPDGSSLAACGWGGVLALWSVPACTKRWTAPVPAEAPRLTGVAWHPAATHGSHSEAAVNLASAASD 242          
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: A0A176WCK7_MARPO (SFM domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WCK7_MARPO)

HSP 1 Score: 99.8 bits (247), Expect = 1.300e-20
Identity = 75/220 (34.09%), Postives = 108/220 (49.09%), Query Frame = 1
Query:    1 RELGQPIRLFSENVADIRERLRRFIAAAEMDDEETEKIKDMVAPKPSFLPRRMQMGGEAAGAXXXXXXXXXATPAAKKAEVVYTPASDGLLEARAAIATMSFGRAKGRLIGAKRRRGTPEEASALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPGA---YSSEKTLLASGAAD 651
            R L QPI LF E   + R+RLR  +A  + D E  + ++   A            G  AAG            P     E   T  S+ L +AR  I   S  RA  R+  AKR+R  P+E    + +  E L  M   ++  S+  D+RPLS   +SPDG  +A+ SW+   KLW++  ++   VL+GH+ERVTGV +HP +    SS    +A+G+AD
Sbjct:  154 RSLQQPITLFGEREMERRDRLRAVMARLDADGELEKLLQAQEAAGD---------GAAAAGVEDAGTSEEVLEPEPSLLEPFITEGSNELRQARMEILKFSMPRAAMRIQRAKRKREDPDEDE--NAETDEVLQGMAQTSMECSEIGDERPLSGCALSPDGFLLATSSWSGHTKLWEVPAVKKTVVLKGHTERVTGVAFHPQSCKTLSSSAGNIATGSAD 362          
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: A0A7S0IV16_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IV16_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 1.570e-20
Identity = 75/217 (34.56%), Postives = 104/217 (47.93%), Query Frame = 1
Query:    1 RELGQPIRLFSENVADIRERLRRFIAAAEMDDEE------TEKIKDMVAPKPSFLPRRMQMGGEAAGAXXXXXXXXXATPAAKKAEVVYTPASDGLLEARAAIATMSFGRAKGRLIG----AKRRRGTPEEASALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPGAYSSE 621
            RE G+PI LF+E   + RERLR  +AA    D+        E +KD  A    FL  + +   E  G               +K E+ YT  S  L  AR  IAT S   A  RL      A+R+ G P    +  +     L  ++N   N   F DDRP+S +  SP     A+GSW+ ++KLW I +      LRGH+ER++G+ WHPGA S++
Sbjct:   97 REFGEPICLFAEGAPERRERLREVMAAKLTHDDAKGELRGAEVLKDAEASIKPFLRHQKKERTEVGG---------------QKDELFYTEGSAALKAARGWIATYSLEHAVKRLADERADAQRKCGDPASEVSAYKTLEHHLVAVENQLSN---FGDDRPVSFVAFSPGSAMCATGSWSAVIKLWSIPSCSGITTLRGHTERISGLAWHPGANSTQ 295          
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: W4FW08_9STRA (SFM domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FW08_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.770e-20
Identity = 70/222 (31.53%), Postives = 104/222 (46.85%), Query Frame = 1
Query:    1 RELGQPIRLFSENVADIRERLRRFIAAAEMDDEETEKIKDMVAPKPSFLPRRMQMGGEAAGAXXXXXXXXXATPAAKKAEVVYTPA-SDGLLEARAAIATMSFGRAKGRLIGAKRRRGTPEEASALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPGAYSSEKT----LLASGAAD 651
            R LG PI LF E   D R RLR  +++  +D                 LP+ +    + + +               + ++ Y P  S+ L  AR A+   S  R   RL     R         LD  A +   T +++A+N+SQ AD RPLSA++ SPD   +A+GSW+  VKLWD +   +     GH++R+TG+ WHP A S+  T    L+ S +AD
Sbjct:   89 RSLGHPITLFGERPEDRRARLRTVLSSLAVD---------------GVLPQAVSRAQDISSSVGYEKEKKVPL----EDQLFYVPVKSNDLKHARQALFNYSMVRTNARLQ--HERAQQDSSVFELDAHAADLYRTSQHIAVNASQLADVRPLSAVRFSPDASMLATGSWSSSVKLWDSKTCALMHTFHGHTDRITGIAWHPTATSAASTSSSLLVGSASAD 289          
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Match: A0A2S7PBE1_9HELO (SFM domain-containing protein n=3 Tax=unclassified Rutstroemia TaxID=2684950 RepID=A0A2S7PBE1_9HELO)

HSP 1 Score: 97.4 bits (241), Expect = 7.200e-20
Identity = 79/224 (35.27%), Postives = 115/224 (51.34%), Query Frame = 1
Query:    1 RELGQPIRLFSENVADIRERLRRFIAA-AEMDDEETEKIKDMVAPKPSFLPRRMQMGGEAAGAXXXXXXXXXATPAAKKAEVVYTPASDGLLEARAAIATMSFGRAKGRLIGAKRRRGTPEEASALDQQAGETLSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPGA------YSSEKTLLASGAAD 651
            RELG+PI LF E+ AD R+RLR  +   AEM D     ++D V          ++MG +A G          A    +  E  YT  S  LLEAR  IA  S  RAK R+   K   G P       +Q       +++  +  SQ A +RP+S +++SP+G  VA+G+W   +K+  I +LE+++ LRGH++RV G++W PGA          +  LASG A+
Sbjct:   75 RELGEPITLFGEDAADRRDRLRSLLTIEAEMRD-----LEDGVGD--------IEMG-DAGG---------EAKEGDEAEEEFYTRGSGELLEARVDIAKFSLPRAKRRVEIQKVESGIPLRTHIKFRQG--IKERLRDFELQGSQTAGERPVSIVRMSPNGEMVAAGNWGGGIKMLGIPDLEVKRTLRGHTDRVGGISWRPGATIEGSGVEGSEVNLASGGAE 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12803.2336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI0_ECTSI2.770e-10986.85SFM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YL38_9STRA1.850e-3843.84Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A7S2WFU9_9STRA8.410e-3542.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M4B2G3_HYAAE1.100e-2535.37SFM domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A7S2CJH2_9STRA3.280e-2242.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J4LV17_9CHLO1.230e-2035.71SFM domain-containing protein n=2 Tax=Volvox TaxID... [more]
A0A176WCK7_MARPO1.300e-2034.09SFM domain-containing protein n=2 Tax=Marchantia p... [more]
A0A7S0IV16_9EUKA1.570e-2034.56Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
W4FW08_9STRA3.770e-2031.53SFM domain-containing protein n=7 Tax=Aphanomyces ... [more]
A0A2S7PBE1_9HELO7.200e-2035.27SFM domain-containing protein n=3 Tax=unclassified... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12803contigH-canaliculatus_F_contig12803:170..3005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score340.9
Seed ortholog evalue4.4e-91
Seed eggNOG ortholog2880.D8LGI0
KEGG koko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015030,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0017070,GO:0030532,GO:0030621,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046540,GO:0070013,GO:0071001,GO:0071005,GO:0071011,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U4 snRNA binding
EggNOG OGsKOG0272@1,KOG0272@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size657
Cds size657
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12803.2336.1prot_H-canaliculatus_F_contig12803.2336.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12803 170..3005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.2870946-CDS-H-canaliculatus_F_contig12803:169..2501622929003.2870946-CDS-H-canaliculatus_F_contig12803:169..250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 170..250 +
1696845646.0910282-CDS-H-canaliculatus_F_contig12803:169..2501696845646.0910282-CDS-H-canaliculatus_F_contig12803:169..250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 170..250 +
1622929003.3041747-CDS-H-canaliculatus_F_contig12803:1313..15081622929003.3041747-CDS-H-canaliculatus_F_contig12803:1313..1508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 1314..1508 +
1696845646.1024575-CDS-H-canaliculatus_F_contig12803:1313..15081696845646.1024575-CDS-H-canaliculatus_F_contig12803:1313..1508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 1314..1508 +
1622929003.3196719-CDS-H-canaliculatus_F_contig12803:1947..21391622929003.3196719-CDS-H-canaliculatus_F_contig12803:1947..2139Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 1948..2139 +
1696845646.1128585-CDS-H-canaliculatus_F_contig12803:1947..21391696845646.1128585-CDS-H-canaliculatus_F_contig12803:1947..2139Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 1948..2139 +
1622929003.3344193-CDS-H-canaliculatus_F_contig12803:2528..25971622929003.3344193-CDS-H-canaliculatus_F_contig12803:2528..2597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 2529..2597 +
1696845646.1238532-CDS-H-canaliculatus_F_contig12803:2528..25971696845646.1238532-CDS-H-canaliculatus_F_contig12803:2528..2597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 2529..2597 +
1622929003.351034-CDS-H-canaliculatus_F_contig12803:2885..30051622929003.351034-CDS-H-canaliculatus_F_contig12803:2885..3005Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 2886..3005 +
1696845646.140451-CDS-H-canaliculatus_F_contig12803:2885..30051696845646.140451-CDS-H-canaliculatus_F_contig12803:2885..3005Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12803 2886..3005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12803.2336.1

>prot_H-canaliculatus_F_contig12803.2336.1 ID=prot_H-canaliculatus_F_contig12803.2336.1|Name=mRNA_H-canaliculatus_F_contig12803.2336.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=219bp
RELGQPIRLFSENVADIRERLRRFIAAAEMDDEETEKIKDMVAPKPSFLP
RRMQMGGEAAGAGAGAGGAAGATPAAKKAEVVYTPASDGLLEARAAIATM
SFGRAKGRLIGAKRRRGTPEEASALDQQAGETLSTMKNLAINSSQFADDR
PLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWH
PGAYSSEKTLLASGAADK*
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mRNA from alignment at H-canaliculatus_F_contig12803:170..3005+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12803.2336.1 ID=mRNA_H-canaliculatus_F_contig12803.2336.1|Name=mRNA_H-canaliculatus_F_contig12803.2336.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2836bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12803:170..3005+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGAGCTCGGGCAACCCATCCGGCTCTTCTCGGAGAACGTGGCCGATAT ACGCGAGCGTCTCCGGAGATTTATCGCGGCGGTGAGGAGAGGAGTCCCGT TGATGCGTTGTTGTCCACCGATTTTCGCGTTGTTCTTTTTTTTCGTCGTC GTCATTGTTGTCGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGTTGA TGTTGGTGTTGGTTTTTTGTTGTCCGATGCTTTGGAGTGAATCAACACCG CCTAGATGCGACACATCCCGGCGGCCGTAGAACACCTCCCAAAAACACGG CTCAAACGCAAGCAAGATACGGGGGGATCGGTTCGGGAGGACAGGCAGGA TACAGAGTACTTTCTGCTTCTCCGTTTCGTCTGGTTTCCCACGCGCACGT GCATTTCGTGTGTGAACGGTCCAAGTACCCGGGGTCACCGCGGGTACATC GGCATCCCCTTGCTGTTTGCTCCCTGGGGCATGCCATCGCCACGACTCCT ACCGAGGACATGGGGTCGGGCAAGACTGCGTGCTTCGCAGAAATCATACT TTGTGCTTTCCTACGGTACTGTTGCTCCGAAGGGTCGCCGCGACTGGCCG ACCACGTCGATAAATTATCGTTGCGCGGGAACAAGACCGACTCACAGAAG GATAGAAAGTACTCTCTACATCCGTGTCCGTGGTCCGAGTGCTTCCTGTC TTCGCGATGAAAGGCGGTTGAGGTCTCAAGATGAAAAACGTGTCCATGGA TTCGTACTTGGGTATTGGTGGACACACGCGGGGGAATCAATGGGCACGAG GAGGGGTTGTCGACGTGCGCCGGCGGCGGAGATGAGAGGATGATCATGAT CACGGGGAGAAACAAGCCATAAGCTGAACCGGCATTTGTGTGTGCCCTGC GACGGCCAACGACAACGCAGAGAGAGGAAGCTACAAATGTAGCGGTAGCA GGGCCACTGCTACCCCAACCGTAAACCTCGTGCCGCTCTCTTCCGGCACT CCAGGACGAGAGCCAAGTGAAGAACGGACGATGGAGAAGAAAAATACTTC GAGCAACATCGAGATCGTTTACCGTGGAACCTATGATGGCGACATCGCGA ACTCAAGCTTCCTCGTGCGCCCGCGCACGCAAACTGCAAAACAGGCGGAG ATGGACGACGAGGAGACGGAGAAGATTAAGGACATGGTGGCCCCCAAGCC ATCCTTCCTACCCAGGAGGATGCAGATGGGGGGCGAGGCGGCGGGAGCGG GGGCAGGGGCGGGGGGTGCAGCTGGCGCCACGCCGGCGGCGAAGAAGGCG GAGGTGGTTTACACGCCTGCCTCCGACGGCCTTCTGGAGGTGAGAAAGAG GTTTCAGATAAGATGATGCCGCCGCCGTCTTCTTGCTGCCTGCCGGAGGC AGCGGACGTCTCCGACCTCGCCGAACGCTTTTTCGTGTCCGCAAGTGATC CCGGTTTTTACGAGTACGCCTCGGCAGATCTGCTATTGAAAGGAGGTCCG TCCAAGAACATGCAAAGCCCACGTCGTGCATGAGTTGATTGGATGAGTTG ATTCCTCTCCGTCGCAGACATATTCGACACGCCGCACACAGGTTCGCCAT TCAGAATGGCGAACCAGAATGGCGAACCTGTGTGCGGCGTGTTGAACATG TCTTCAACGACCTTGGCATGGGTTTTTGCTATGACCTGGCGCCATGACTG ACTTGCGACAACAGGAAGAACAGACCAACAAACGGCATATCAACCCCCCT CCTCTATGACGCCCTCGTGCTCCTTCAGGCAAGAGCTGCCATCGCAACGA TGTCGTTCGGCCGAGCCAAGGGCCGCCTGATCGGAGCGAAACGGCGCCGC GGAACTCCCGAGGAGGCATCGGCGCTGGACCAACAGGCGGGCGAAACGCT GTCGACGATGAAGAACCTCGCCATCAACTCGAGTCAGTTCGCGGACGACC GGCCTCTATCGGCAATACAGGTACCTGTTTTTCTAAAAGAAGTCTGCTTG TGTGTGTTTTTAGGTATGTGGTGATGGTGCTGCTCTCCGTGTTGGTGTCG CCGTCGATTTTTGGTGGTCGTGGTCGTGGTGGCCGTGATTGCGGCGCCGG ACGTGATGATGATTCATTTTTGTGATTGTTGGTGATGGTAGCGATGGTGG TGGCGGTGGTAGTGATGGACGTATTCTGGTGGTGTTTGCATGCCTCTCGT TCGTTCCCTTTACGTTCCTTCGCTGGTTTCTGGCTTGAGGAAGCACGCGC TCAGCTTCGCTAAATTGTATCGAACGCTTCTGCTGCTGCTGCTGCTGCTG ATGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTACTGCTGCTACTGCG TTTGATCAGGTGTCACCGGATGGAGGAACCGTCGCCTCGGGGAGCTGGAC CTGTCTGGTCAAGCTGTGGGATATCGAGGTAGGCAGTGGACTCTTCTAAA TATGCTGCGAAAAGAGTTGATTCCATTTATACCACAGCCACCGCCACTCT TGACGGAGCTCGTTATCCCTAGCACGTCACTTCCTCCCACCCCGCGCGCC TTTGCCCACTCTCATGGGCTTGTCGAACTAAAAAAAGTGAAGATCGTCCC CAAATCAGGTGATCCTCAATGGACGCAAATGCCCCCTCTTCCACTGCGCG TTGCATCTCCCGGTCTAACCCGAATCTGTTGCCTCACTTTTGACGTGCGA TGTTCGTCGCACACAGAATCTGGAGATGCGCAAGGTGCTGAGGGGGCACA GTGAGCGCGTTACGGGCGTTACTTGGCACCCAGGCGCCTACTCATCGGAG AAAACCTTGCTGGCGTCCGGCGCCGCGGACAAGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12803:170..3005+

>mRNA_H-canaliculatus_F_contig12803.2336.1 ID=mRNA_H-canaliculatus_F_contig12803.2336.1|Name=mRNA_H-canaliculatus_F_contig12803.2336.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1314bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12803:170..3005+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGAGCTCGGGCAACCCATCCGGCTCTTCTCGGAGAACGTGGCCGATAT
ACGCGAGCGTCTCCGGAGATTTATCGCGGCGAGAGAGCTCGGGCAACCCA
TCCGGCTCTTCTCGGAGAACGTGGCCGATATACGCGAGCGTCTCCGGAGA
TTTATCGCGGCGGCGGAGATGGACGACGAGGAGACGGAGAAGATTAAGGA
CATGGTGGCCCCCAAGCCATCCTTCCTACCCAGGAGGATGCAGATGGGGG
GCGAGGCGGCGGGAGCGGGGGCAGGGGCGGGGGGTGCAGCTGGCGCCACG
CCGGCGGCGAAGAAGGCGGAGGTGGTTTACACGCCTGCCTCCGACGGCCT
TCTGGAGGCGGAGATGGACGACGAGGAGACGGAGAAGATTAAGGACATGG
TGGCCCCCAAGCCATCCTTCCTACCCAGGAGGATGCAGATGGGGGGCGAG
GCGGCGGGAGCGGGGGCAGGGGCGGGGGGTGCAGCTGGCGCCACGCCGGC
GGCGAAGAAGGCGGAGGTGGTTTACACGCCTGCCTCCGACGGCCTTCTGG
AGGCAAGAGCTGCCATCGCAACGATGTCGTTCGGCCGAGCCAAGGGCCGC
CTGATCGGAGCGAAACGGCGCCGCGGAACTCCCGAGGAGGCATCGGCGCT
GGACCAACAGGCGGGCGAAACGCTGTCGACGATGAAGAACCTCGCCATCA
ACTCGAGTCAGTTCGCGGACGACCGGCCTCTATCGGCAATACAGGCAAGA
GCTGCCATCGCAACGATGTCGTTCGGCCGAGCCAAGGGCCGCCTGATCGG
AGCGAAACGGCGCCGCGGAACTCCCGAGGAGGCATCGGCGCTGGACCAAC
AGGCGGGCGAAACGCTGTCGACGATGAAGAACCTCGCCATCAACTCGAGT
CAGTTCGCGGACGACCGGCCTCTATCGGCAATACAGGTGTCACCGGATGG
AGGAACCGTCGCCTCGGGGAGCTGGACCTGTCTGGTCAAGCTGTGGGATA
TCGAGGTGTCACCGGATGGAGGAACCGTCGCCTCGGGGAGCTGGACCTGT
CTGGTCAAGCTGTGGGATATCGAGAATCTGGAGATGCGCAAGGTGCTGAG
GGGGCACAGTGAGCGCGTTACGGGCGTTACTTGGCACCCAGGCGCCTACT
CATCGGAGAAAACCTTGCTGGCGTCCGGCGCCGCGGACAAGTAAAATCTG
GAGATGCGCAAGGTGCTGAGGGGGCACAGTGAGCGCGTTACGGGCGTTAC
TTGGCACCCAGGCGCCTACTCATCGGAGAAAACCTTGCTGGCGTCCGGCG
CCGCGGACAAGTAA
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