mRNA_H-canaliculatus_F_contig1280.2332.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1280.2332.1 vs. uniprot
Match: D7FK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK81_ECTSI) HSP 1 Score: 584 bits (1505), Expect = 1.810e-197 Identity = 290/450 (64.44%), Postives = 362/450 (80.44%), Query Frame = 1
Query: 949 PTKTAYHSMMSGLRREEKWESIRKVINALVEDGLIPTEAGFAFGFMSARRLCDPQLATMLLERRNQAGLTPRQDFFVNVMVTLGEAGKSDEVLDVWRQLVCLQGIEGVTIRPETFFLAMRHAVKVKAWDEVEAIIGMIQDDGRPIDEKVHNVLLGRRQDITAVKD---VERLLVVLENMEIQSGIELKPISQLHLAVLCADVKMHDRAMPLFDAARSAGVTLGKFHRPALLSTLVAVGKLPEAKAEWTKATWAHKRDFTGSTLQLFMRVAERLGDADMALELHHESFKAQKRYARWFHPIALQVLAEAGRLEEAFGIAETLRSRGQPKLPPRSYDILCQCCKERGDKESIVKVVETMRKGNLSMYLPPPNVLGFVVEAFIERGKAKELISLFDRMRAQRLQPDPEVYALLAGAAVDANDHEKAGIFLEMARKGGLEPSPRAVAFAEGDAP 2289
PTK AY SM+SGLR E W+ I IN ++E+ ++PTEAGFA GFM+AR+L D + A MLLERR+QAG+ PRQDFFVNVMVTLGEAGK ++ L+ WR+LVC+QGI+G+ IRPETF+LA+R AVK+KAWDEVEAIIGM+Q+DGRP+DEKVHNVL+GRRQ ++ KD VERLL VL+ ME SG L P+ QL LAV+C+D MH RAMPLF++A+ GV GKFH+P LLSTLVA+GK A+ EW +ATWA+K++FTGST Q+FM+ AE L DAD ALELH +S + ++++ RWFHPIALQVLAEAGRLEEAF IAETLR+ G PKLPP SY +LC+CCK+ G+K +VKVV+TMRKG +S+YLPPP+VLGFVVEAFIE+G E+++LF+RMRAQR+QP+PEVY LLA AA AND + F EMA KGG + S A+AF + +AP
Sbjct: 3 PTKVAYQSMISGLRIGEDWQGILTTINEMLEEEVVPTEAGFAVGFMTARKLGDVEFAKMLLERRSQAGMPPRQDFFVNVMVTLGEAGKPEDFLEYWRRLVCVQGIDGLGIRPETFYLALRTAVKIKAWDEVEAIIGMMQEDGRPMDEKVHNVLMGRRQAVS--KDPAHVERLLKVLQQMEAYSGRGLTPMCQLQLAVVCSDAGMHARAMPLFESAQREGVLFGKFHKPPLLSTLVALGKFKRARTEWRQATWANKKEFTGSTFQVFMKAAEGLKDADWALELHEQSLEGKQKHGRWFHPIALQVLAEAGRLEEAFRIAETLRTSGHPKLPPTSYHVLCRCCKQHGEKALVVKVVQTMRKGTMSLYLPPPDVLGFVVEAFIEKGIPGEVLTLFERMRAQRIQPNPEVYVLLADAAAAANDLPQTVHFAEMAEKGGRKASAGALAFTQNNAP 450
BLAST of mRNA_H-canaliculatus_F_contig1280.2332.1 vs. uniprot
Match: D7FK78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK78_ECTSI) HSP 1 Score: 201 bits (512), Expect = 1.140e-51 Identity = 151/462 (32.68%), Postives = 229/462 (49.57%), Query Frame = 1
Query: 565 ASNNPDAIQEALGLLEAGRAVGVNNLAVYNAIFRFLC----MSTKASGTIAEVLEQMKRDG-ITPDLETYNLIIFGYANGKEVASAQRTYGELEASGLEPNDITLSNMIVAHSWGNVKDMMRIFYVLQSKEFKPTKTAYHSMMSGLRREEKWESIRKVINALVEDGLIPTEAGFAFGFMSARRLCDPQLATMLLERRNQAGLTPRQDFFVNVMVTLGEAGKSDEVLDVWRQLVCLQGIEGVTIRPETFFLAMRHAVKVKAWDEVEAIIGMIQDDGRPIDEKVHNVLLGRRQ--DITAVK---DVERLLVVLENMEIQSGIELKPISQLHLAVLCADVKMHDRAMPLFDAARSAGVTLGKFHRPALLSTLVAVGKLPEAKAEWTKATWAHKRD-FTGSTLQLFMRVAERLGDADMALELHHESFKAQKRYARWFHPIALQ----VLAEAGRLEEAFGIAETLR 1905
ASN A+ LLE GR G+ ++ VYN + + + M+ + + EQM D + P+ TY+ +I+GY+ G++ A R E+ GL+P TLS+MIVAHSWG+V+DM R+ ++ K + PT+ A +M+ LRR E WE I A++E+G TEAG +A + A LL + P++ +V VMV L A + +E L WR+LV L G+ V + +T+ LA+ AVK++ WDE+EAI+ M+Q + V + + R D+ + + D RL + + + + + LH A+ A + +AM FD A + LG L+ +L V + E K WT+ T + F + L A L DAD ALELH S + +R A P Q VL +AGRLEEA + + R
Sbjct: 37 ASNGNGPWWLAVHLLEKGRQNGIKDVKVYNTVLKMIATDERMTEDKMKEMERLFEQMTEDDELEPEALTYSHLIYGYSQGRKEGEAVRLLEEMTVKGLQPERKTLSSMIVAHSWGSVEDMRRVSSEMREKGWTPTQRANSAMIGALRRAEDWEGILDTTRAMLENGQTMTEAGLVVAIKAAANAGNAGFARELLLTHGKNKHRPQEQLYVCVMVALRNACQHEECLACWRELVLLDGLGDVKLNGKTYNLALTSAVKMERWDEMEAILDMMQA------KAVESTVATWRSMVDVWSAEETGDEGRLDRIFGEIHRRQWRPDRAVG-LHAAMAYARCRAWVKAMAWFDPALAEDNKLGPNETELLVMSLAGVERYGEVKEVWTRNTGSKDASVFRPAVLLTMAEAARELDDADWALELH--SVASSRRGAGVAAPRLWQDVVGVLTKAGRLEEAADVLQQTR 489
BLAST of mRNA_H-canaliculatus_F_contig1280.2332.1 vs. uniprot
Match: D8LG81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG81_ECTSI) HSP 1 Score: 201 bits (512), Expect = 1.310e-50 Identity = 159/550 (28.91%), Postives = 270/550 (49.09%), Query Frame = 1
Query: 520 GLVKGIERVTYATNSASNNPDAIQEALGLLEAGRAVGVNNLAVYNAIFRFLCM----STKASGTIAEVLEQMKRDGITPDLETYNLIIFGYANGKEVASAQRTYGELEASGLEPNDITLSNMIVAHSWGNVKDMMRIFYVLQSKEFKPTKTAYHSMMSGLRREEKWESIRKVINALVEDGLIPTEAGFAFGFMSARRLCDPQLATMLLERRNQAGLTPRQDFFVNVMVTLGEAGKSDEVLDVWRQLVCLQGIEGVTIRPETFFLAMRHAVKVKAWDEVEAIIGMIQDDGR-PIDEKVHNVLLGRRQDITA--VKDVERLLVVLENMEIQSGIELKPISQLHLAVLCADVKMHDRAMPLFDAARSAGVTLGKFHRPALLSTLVAVGKLPEAKAEWTK---ATWAHKRDFTGSTLQLFMRVAERLGDADMALELHHESFKAQKRYARWFHPIALQVLAEAGRLEEAFGI-----AETLRSRGQPKLPPRSYDILCQCCKERGDKESIVKVVETMRKGNLSMYLPP--PNVLGFVVEAFIERGKAKELISLFD 2118
GLV+ I+R+ A N + + +L+ GR G+ L VY A+ + L S A+ + VLE+M+ DG+ PD+ TYN I+ +A +A + E+ + G+EPN T S+MIVAHS G M R + +K ++ ++TA M++ + ++ + I + E+ +PTEA F + + +A L + A L R +AGL P + +V +M+ L +AGK++E L+ WRQLVC+ G+ GV I PET+ LA++ + V DE+EA++ M++ P DE L G + T + +R + +SG A A + A LF + L L+ + +G+ E K W++ A A+K + L+ ++ A+ LGD D ALE+ + +A KR + +++L EAGR +EA + A LR+ ++ Y++ + C++ GD E ++ + MR + L P+V+ F+++A + G+A E+ FD
Sbjct: 117 GLVRRIKRLAGA-----NKRIKMGLVIQILDEGRRQGIKELVVYKAVLKQLLSTYGESKDAAQNLERVLERMEEDGLQPDVTTYNHILDFHALLHNSEAAVAVHEEMLSRGVEPNQRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRTACLGMIAVMGFRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFHHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRQLVCVHGLNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMMEAQRVVPTDETYAAALGGLEKWFTPHRAQGAQRAFEAIA----RSGPPPSMRVLQRKAKGWAHAGLWQEAEQLFSLVLAENGKLSNSEWKCLMMSQFYLGRFAEVKKSWSRNVEALEANKAGHSHLKLEYSLKAAKALGDVDWALEVRDAASEAGKRSVH-LDRVLVEILLEAGRPQEARDVLKEWEAVALRA-SSARVFQGVYELALESCEKSGDVELGLQFFDGMRSASPPYRLRSSCPSVV-FILKALKDAGRAHEVAPFFD 654
BLAST of mRNA_H-canaliculatus_F_contig1280.2332.1 vs. uniprot
Match: A0A6H5KYF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF7_9PHAE) HSP 1 Score: 201 bits (512), Expect = 1.330e-50 Identity = 160/554 (28.88%), Postives = 273/554 (49.28%), Query Frame = 1
Query: 523 LVKGIERVTYATNSASNNPDAIQEALGLLEAGRAVGVNNLAVYNAIFRFLCMSTKASGTIAE----VLEQMKRDGITPDLETYNLIIFGYANGKEVASAQRTYGELEASGLEPNDITLSNMIVAHSWGNVKDMMRIFYVLQSKEFKPTKTAYHSMMS--GLRREEKWESIRKVINALVEDGLIPTEAGFAFGFMSARRLCDPQLATMLLERRNQAGLTPRQDFFVNVMVTLGEAGKSDEVLDVWRQLVCLQGIEGVTIRPETFFLAMRHAVKVKAWDEVEAIIGMIQDDGR-PIDEKVHNVLLGRRQDITA--VKDVERLLVVLENMEIQSGIELKPISQLHLAVLCADVKMHDRAMPLFDAARSAGVTLGKFHRPALLSTLVAVGKLPEAKAEWT---KATWAHKRDFTGSTLQLFMRVAERLGDADMALELHHESFKAQKRYARWFHPIALQVLAEAGRLEEAFGIA---ETLRSRGQP-KLPPRSYDILCQCCKERGDKESIVKVVETMRKGNLSMYLPP--PNVLGFVVEAFIERGKAKELISLFDRMRA 2130
LV+ I+R+ A N ++ + +L+ GR G+ L VY A+ + L + + S A+ V+E+M+ DG+ PD+ TYN I+ +A +A Y E+ + G+EPN T S+MIVAHS G M R + +K ++ ++ A M++ G+RR+ ++ + I + E+ +PTEA F + + +A L + A L + R +AGL P + +V +M L +AGK++E L+ WRQLVC+ G GV I PET+ LA++ + V DE+EA++ M++ P D+ L G + T + +R + +SG A CA + A LF + L L+ + + + E K W+ K +K + L+ ++ A+ LGD D ALE+ + +A KR + +++L EAGR +EA + E L R ++ Y++ + C++ GD E ++ + MR + L P+V F+++A + G+A+E++S FD A
Sbjct: 118 LVRRIKRLAGA-----NKRTKMRLVIQILDEGRQQGIKELVVYKAVLKQLLTTYRESKDAAQNLERVIERMEEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVEPNQRTASHMIVAHSRGCHDAMYRAVEEMYAKGWQGSRVACLGMIAVMGIRRD--YDGVLYTIRRMREESKLPTEAAFVWAYRAAENLGQVETAKQLFQHRAEAGLPPAEYVYVKMMSILMKAGKAEECLEYWRQLVCVHGFNGVVIHPETYNLAIKCTMVVGNQDEMEAVLAMMEAQRVVPTDDTYSAALGGLEKWFTPHRARGAQRAFEAIA----RSGPPPSTRVLQRKAKGCAHAGLWQEAEELFSLVLAENGKLSNSDWKCLMMSQFYLERFGEVKKSWSRSVKGLEVNKAGHSHRKLEYSLKAAKALGDVDWALEVRDAASEAGKRSVH-LDRVWVEILLEAGRPQEARDVLKEWEALALRASSARVFQGVYELALESCEKSGDVELGLEFFDGMRSASPPYRLRSSCPSV-AFILKALKDAGRAEEMVSFFDEFLA 658
BLAST of mRNA_H-canaliculatus_F_contig1280.2332.1 vs. uniprot
Match: D7FK82_ECTSI (Pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK82_ECTSI) HSP 1 Score: 125 bits (313), Expect = 3.600e-28 Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 1
Query: 508 DSAAGLVKGIERVTYA------TNSASNNPDAIQEALGLLEAGRAVGVNNLAVYNAIFRFLCMSTKASGTIAEVLEQMKRDGITPDLETYNLIIFGYANGKEVASAQRTYGELEASGLEPNDITLSNMIVAHSWGNVKDMMR 915
D AGLV ER+ Y ++ +N A +E L LL+A R+ G + +Y A+F+ L ++T A+ I+ + EQMK+DGI PD+ETYNLII+GYA+ K+VA A+RTY EL +SGLE N+ TLSNM+VA+SW ++ +M R
Sbjct: 107 DDVAGLV---ERLNYLGTQNRDNSNRNNGASAAKEGLQLLQAARSRGTKDARLYKAVFKLLSVNTNAAA-ISSLSEQMKQDGIKPDVETYNLIIYGYASSKDVAGARRTYEELLSSGLEANETTLSNMVVANSWKDIDEMRR 244 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1280.2332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1280.2332.1 >prot_H-canaliculatus_F_contig1280.2332.1 ID=prot_H-canaliculatus_F_contig1280.2332.1|Name=mRNA_H-canaliculatus_F_contig1280.2332.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=732bp MLRVRSLAIRKASVLVRAFVADTGTEGSKREQHHALDNKRRQCHRAHGGEback to top mRNA from alignment at H-canaliculatus_F_contig1280:11826..24521- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1280.2332.1 ID=mRNA_H-canaliculatus_F_contig1280.2332.1|Name=mRNA_H-canaliculatus_F_contig1280.2332.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=12696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1280:11826..24521- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1280:11826..24521- >mRNA_H-canaliculatus_F_contig1280.2332.1 ID=mRNA_H-canaliculatus_F_contig1280.2332.1|Name=mRNA_H-canaliculatus_F_contig1280.2332.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4392bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1280:11826..24521- (Hapterophycus canaliculatus Oshoro5f female)back to top |