mRNA_H-canaliculatus_F_contig12778.2309.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI) HSP 1 Score: 205 bits (521), Expect = 7.350e-58 Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 1
Query: 52 RALRRNESVRLLELCFNRITAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPASGLETLDVGFNHIGTAGVAALMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLGSSFARIGMPPQV 570
RA+ RN S+RLLELCFNRITA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ALP GLETLDVGF+H+GTAGVAALMQ AT SP+FT LSLSGNALDAEAAKAIQAALA+PRC+LR L+LDHTSLGRASEGFIANGVLSNRSLALVTLTGF LGSSFAR+GMPPQV
Sbjct: 415 RAVARNTSIRLLELCFNRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALPTLGLETLDVGFSHVGTAGVAALMQ-ATANSPSFTSLSLSGNALDAEAAKAIQAALAQPRCSLRCLYLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQV 586
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE) HSP 1 Score: 135 bits (341), Expect = 2.250e-33 Identity = 78/116 (67.24%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 223 ALPASGLETLDVGFNHIGTAGVAALMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLGSSFARIGMPPQV 570
ALP GLETLDVGF+H+GTAGVAALMQ AALA+PRC+LR L LDHTSLGRASEGFIANGVLSNRSLALVTLTGF LGSSFAR+GMPPQV
Sbjct: 520 ALPTLGLETLDVGFSHVGTAGVAALMQ----------------------------AALAQPRCSLRCLCLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQV 607
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A7S4ALF8_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALF8_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 8.640e-15 Identity = 65/195 (33.33%), Postives = 94/195 (48.21%), Query Frame = 1
Query: 1 LHMSDNEIGDEGLEGLARALRRNES---VRLLELCFNRITAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPASG-LETLDVGFNHIGTAGVAALMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLGSSFARIGMPPQVR 573
L + + +IGDE + LA +++ N++ + L+L FN IT A +PA +E LDVGFN I T G+ LM+ S LSLSGNA+DA AAK++ ALA C+L+ + L H S+G + IA G++SN AL L GF +GS +G P ++
Sbjct: 450 LSLPNCDIGDEEVRMLALSIKANKNELPLESLQLSFNNITHHGLEAMANALWGSTTMRELKVDNNMIGDRGAHQMAAIIPAMKVIEVLDVGFNSITTPGLTILMKS-VAESKKLLSLSLSGNAIDATAAKSVAYALAY-NCSLKSIFLVHCSIGHEEQRHIAAGIVSNSRTALDRLNGFEIGSILLTLGFPEALK 642
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A7S4EKP8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKP8_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.380e-12 Identity = 62/182 (34.07%), Postives = 88/182 (48.35%), Query Frame = 1
Query: 1 LHMSDNEIGDEGLEGLARALRRNES---VRLLELCFNRITAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPASG-LETLDVGFNHIGTAGVAALMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLG 534
L + + +IGDE + LA +++ N++ + L+L FN IT A +PA +E LDVGFN I T G+ LM+ S LSLSGNA+DA AAK++ ALA C+L+ + L H S+G + IA G++SN AL L GF +G
Sbjct: 376 LSLPNCDIGDEEVRMLALSIKANKNELPLESLQLSFNNITHHGLEAMANALWGSTTMRELKVDNNMIGDRGAHQMAAIIPAMKVIEVLDVGFNSITTPGLTILMKS-VAESKKLLSLSLSGNAIDATAAKSVAYALAY-NCSLKSIFLVHCSIGHEEQRHIAAGIVSNSRTALDRLNGFEIG 555
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A1E7FR04_9STRA (RNI-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR04_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.800e-7 Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 1
Query: 19 EIGDEGLEGLARALRRNES---VRLLELCFNRITAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPASGL-ETLDVGFNHIGTAGVAALMQQATVA-SPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGF 525
+IGD+ + LA ++ N+ + L+L FN I+ A +P + + LDVGFN I +G+ LM+ T+A S LS+SGNA+D+ AAK++ ALA C+L+ + L H S+G IA G++SN +L +TGF
Sbjct: 166 DIGDDEICMLASCIKSNKGRLPIESLQLSFNNISYKGLEAVANALWGSTTLKELKVDNNIIGDRGAHQMAAIIPTMKVFKILDVGFNKITASGLTVLMK--TIAESQTLESLSVSGNAIDSNAAKSVAFALAY-NCSLQSIFLIHCSIGHEELRHIAAGIVSNSRTSLHRMTGF 336
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A448YZK4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZK4_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 7.410e-7 Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query: 295 LMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLGSSFARIGMPPQVR 573
++ ++ S LSLSGNA+DA AAK++ ALA C+LR L L H S+G + IA G++SN L L GF +G +G P ++
Sbjct: 505 VLMKSVAESKMLLSLSLSGNAIDATAAKSVAYALAY-NCSLRSLFLVHCSIGHEEQRHIAAGIVSNSRTKLDQLNGFEIGPILLTLGFPEPLK 596 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12778.2309.1 >prot_H-canaliculatus_F_contig12778.2309.1 ID=prot_H-canaliculatus_F_contig12778.2309.1|Name=mRNA_H-canaliculatus_F_contig12778.2309.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp MSDNEIGDEGLEGLARALRRNESVRLLELCFNRITAIGAEALAKAIWESTback to top mRNA from alignment at H-canaliculatus_F_contig12778:651..3295+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12778.2309.1 ID=mRNA_H-canaliculatus_F_contig12778.2309.1|Name=mRNA_H-canaliculatus_F_contig12778.2309.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2645bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12778:651..3295+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12778:651..3295+ >mRNA_H-canaliculatus_F_contig12778.2309.1 ID=mRNA_H-canaliculatus_F_contig12778.2309.1|Name=mRNA_H-canaliculatus_F_contig12778.2309.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12778:651..3295+ (Hapterophycus canaliculatus Oshoro5f female)back to top |