prot_H-canaliculatus_F_contig12778.2309.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig12778.2309.1
Unique Nameprot_H-canaliculatus_F_contig12778.2309.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length197
Homology
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 6.820e-58
Identity = 151/173 (87.28%), Postives = 160/173 (92.49%), Query Frame = 0
Query:   16 RALRRNESVRLLELCFNRITAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPASGLETLDVGFNHIGTAGVAALMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLGSSFARIGMPPQV 188
            RA+ RN S+RLLELCFNRITA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ALP  GLETLDVGF+H+GTAGVAALMQ AT  SP+FT LSLSGNALDAEAAKAIQAALA+PRC+LR L+LDHTSLGRASEGFIANGVLSNRSLALVTLTGF LGSSFAR+GMPPQV
Sbjct:  415 RAVARNTSIRLLELCFNRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALPTLGLETLDVGFSHVGTAGVAALMQ-ATANSPSFTSLSLSGNALDAEAAKAIQAALAQPRCSLRCLYLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQV 586          
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.100e-33
Identity = 78/116 (67.24%), Postives = 83/116 (71.55%), Query Frame = 0
Query:   73 ALPASGLETLDVGFNHIGTAGVAALMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLGSSFARIGMPPQV 188
            ALP  GLETLDVGF+H+GTAGVAALMQ                            AALA+PRC+LR L LDHTSLGRASEGFIANGVLSNRSLALVTLTGF LGSSFAR+GMPPQV
Sbjct:  520 ALPTLGLETLDVGFSHVGTAGVAALMQ----------------------------AALAQPRCSLRCLCLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQV 607          
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A7S4ALF8_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALF8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.050e-14
Identity = 64/189 (33.86%), Postives = 91/189 (48.15%), Query Frame = 0
Query:    5 EIGDEGLEGLARALRRNES---VRLLELCFNRITAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPASG-LETLDVGFNHIGTAGVAALMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLGSSFARIGMPPQVR 189
            +IGDE +  LA +++ N++   +  L+L FN IT                                    A +PA   +E LDVGFN I T G+  LM+     S     LSLSGNA+DA AAK++  ALA   C+L+ + L H S+G   +  IA G++SN   AL  L GF +GS    +G P  ++
Sbjct:  456 DIGDEEVRMLALSIKANKNELPLESLQLSFNNITHHGLEAMANALWGSTTMRELKVDNNMIGDRGAHQMAAIIPAMKVIEVLDVGFNSITTPGLTILMKS-VAESKKLLSLSLSGNAIDATAAKSVAYALAY-NCSLKSIFLVHCSIGHEEQRHIAAGIVSNSRTALDRLNGFEIGSILLTLGFPEALK 642          
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A7S4EKP8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKP8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.290e-12
Identity = 61/176 (34.66%), Postives = 85/176 (48.30%), Query Frame = 0
Query:    5 EIGDEGLEGLARALRRNES---VRLLELCFNRITAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPASG-LETLDVGFNHIGTAGVAALMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLG 176
            +IGDE +  LA +++ N++   +  L+L FN IT                                    A +PA   +E LDVGFN I T G+  LM+     S     LSLSGNA+DA AAK++  ALA   C+L+ + L H S+G   +  IA G++SN   AL  L GF +G
Sbjct:  382 DIGDEEVRMLALSIKANKNELPLESLQLSFNNITHHGLEAMANALWGSTTMRELKVDNNMIGDRGAHQMAAIIPAMKVIEVLDVGFNSITTPGLTILMKS-VAESKKLLSLSLSGNAIDATAAKSVAYALAY-NCSLKSIFLVHCSIGHEEQRHIAAGIVSNSRTALDRLNGFEIG 555          
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A1E7FR04_9STRA (RNI-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR04_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.650e-7
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0
Query:   82 LDVGFNHIGTAGVAALMQQATVA-SPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGF 173
            LDVGFN I  +G+  LM+  T+A S     LS+SGNA+D+ AAK++  ALA   C+L+ + L H S+G      IA G++SN   +L  +TGF
Sbjct:  247 LDVGFNKITASGLTVLMK--TIAESQTLESLSVSGNAIDSNAAKSVAFALAY-NCSLQSIFLIHCSIGHEELRHIAAGIVSNSRTSLHRMTGF 336          
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Match: A0A448YZK4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZK4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.090e-7
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 0
Query:   97 LMQQATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRASEGFIANGVLSNRSLALVTLTGFHLGSSFARIGMPPQVR 189
            ++ ++   S     LSLSGNA+DA AAK++  ALA   C+LR L L H S+G   +  IA G++SN    L  L GF +G     +G P  ++
Sbjct:  505 VLMKSVAESKMLLSLSLSGNAIDATAAKSVAYALAY-NCSLRSLFLVHCSIGHEEQRHIAAGIVSNSRTKLDQLNGFEIGPILLTLGFPEPLK 596          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12778.2309.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FK51_ECTSI6.820e-5887.28Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KVK7_9PHAE2.100e-3367.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4ALF8_9STRA2.050e-1433.86Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S4EKP8_9STRA3.290e-1234.66Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FR04_9STRA3.650e-744.09RNI-like protein (Fragment) n=1 Tax=Fragilariopsis... [more]
A0A448YZK4_9STRA7.090e-738.71Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 1..20
e-value: 96.0
score: 3.1
coord: 77..103
e-value: 130.0
score: 2.2
coord: 49..76
e-value: 4.2E-4
score: 29.6
coord: 105..132
e-value: 3.2
score: 13.6
coord: 21..48
e-value: 9.7
score: 10.2
NoneNo IPR availablePANTHERPTHR24113:SF5RAN GTPASE-ACTIVATING PROTEINcoord: 1..131
coord: 52..176
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 1..131
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 52..176
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 2..178
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 103..183
e-value: 1.0E-8
score: 36.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..102
e-value: 1.6E-25
score: 91.2
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 21..43
e-value: 1.9
score: 8.8
coord: 1..15
e-value: 0.041
score: 13.9
coord: 79..98
e-value: 0.0014
score: 18.5
coord: 50..71
e-value: 0.0082
score: 16.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12778contigH-canaliculatus_F_contig12778:657..3295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12778.2309.1mRNA_H-canaliculatus_F_contig12778.2309.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig12778 651..3295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig12778.2309.1 ID=prot_H-canaliculatus_F_contig12778.2309.1|Name=mRNA_H-canaliculatus_F_contig12778.2309.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp
MSDNEIGDEGLEGLARALRRNESVRLLELCFNRITAIGAEALAKAIWEST
GLRALRLDNNQIGDRGAHALAAALPASGLETLDVGFNHIGTAGVAALMQQ
ATVASPAFTGLSLSGNALDAEAAKAIQAALARPRCALRRLHLDHTSLGRA
SEGFIANGVLSNRSLALVTLTGFHLGSSFARIGMPPQVRFLFLRGY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf