mRNA_H-canaliculatus_F_contig12774.2307.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12774.2307.1
Unique NamemRNA_H-canaliculatus_F_contig12774.2307.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12774.2307.1 vs. uniprot
Match: A0A6H5KS32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS32_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 8.420e-17
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 2 
Query:  110 PGAEGVEEEAKEQQDDLELIARCFPEDLLLAVEALPSTIDALAELPGES 256
            PG E VEEEAKEQQDDLELIA+CFPEDLLLAVEALPSTIDALAE P  S
Sbjct: 1736 PGTEAVEEEAKEQQDDLELIAKCFPEDLLLAVEALPSTIDALAEAPQAS 1784
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BLAST of mRNA_H-canaliculatus_F_contig12774.2307.1 vs. uniprot
Match: D8LU39_ECTSI (E3 ubiquitin-protein ligase listerin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU39_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.420e-10
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  146 QQDDLELIARCFPEDLLLAVEALPSTIDALAELPGES 256
            QQDDLELIA+CFPEDLLLAVEALPSTIDALAE P  S
Sbjct: 1690 QQDDLELIAKCFPEDLLLAVEALPSTIDALAEAPQAS 1726
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12774.2307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS32_9PHAE8.420e-1787.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU39_ECTSI1.420e-1089.19E3 ubiquitin-protein ligase listerin n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12774contigH-canaliculatus_F_contig12774:168..957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue8.5e-09
Seed eggNOG ortholog2880.D8LU39
KEGG koko:K22377
EggNOG free text desc.protein ubiquitination
EggNOG OGsCOG5219@1,KOG0803@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12774.2307.1prot_H-canaliculatus_F_contig12774.2307.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12774 168..953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.4672866-CDS-H-canaliculatus_F_contig12774:167..2611622928998.4672866-CDS-H-canaliculatus_F_contig12774:167..261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12774 168..261 -
1696845644.1512647-CDS-H-canaliculatus_F_contig12774:167..2611696845644.1512647-CDS-H-canaliculatus_F_contig12774:167..261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12774 168..261 -
1622928998.4827642-CDS-H-canaliculatus_F_contig12774:783..9531622928998.4827642-CDS-H-canaliculatus_F_contig12774:783..953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12774 784..953 -
1696845644.161389-CDS-H-canaliculatus_F_contig12774:783..9531696845644.161389-CDS-H-canaliculatus_F_contig12774:783..953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12774 784..953 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.4995172-UTR-H-canaliculatus_F_contig12774:953..9571622928998.4995172-UTR-H-canaliculatus_F_contig12774:953..957Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12774 954..957 -
1696845644.17616-UTR-H-canaliculatus_F_contig12774:953..9571696845644.17616-UTR-H-canaliculatus_F_contig12774:953..957Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12774 954..957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12774.2307.1

>prot_H-canaliculatus_F_contig12774.2307.1 ID=prot_H-canaliculatus_F_contig12774.2307.1|Name=mRNA_H-canaliculatus_F_contig12774.2307.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=88bp
MGAEGGGAGEGGDGGDDAGGAGGEAAGEGGDQRDLPGAEGVEEEAKEQQD
DLELIARCFPEDLLLAVEALPSTIDALAELPGESGDSA
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mRNA from alignment at H-canaliculatus_F_contig12774:168..957-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12774.2307.1 ID=mRNA_H-canaliculatus_F_contig12774.2307.1|Name=mRNA_H-canaliculatus_F_contig12774.2307.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=790bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12774:168..957- (Hapterophycus canaliculatus Oshoro5f female)
CAAGATGGGAGCTGAGGGGGGGGGTGCCGGAGAGGGCGGTGATGGTGGTG
ACGATGCTGGTGGTGCTGGCGGAGAGGCGGCGGGCGAAGGGGGGGATCAG
CGAGACTTGCCTGGTGCGGAGGGGGTCGAAGAGGAAGCGAAGGAGCAGCA
AGACGATCTAGAGCTGATTGCCAGGTGTGCTGCCTGTGGGTGTGTGTGTC
ATCGAGGGAGGCGTCGGGGTCCGGGAGGGTTGGCTTGGCGCAGCTCCTCT
ACTTGTAGGCACCTTGAGCGGTCATCGATCGCTGCCGGACAGGGTAGTGA
TGACGCTTTTTTGCCGCGGATCAGGGAGGGCCGACGGGGTAGTTGTTACT
ACGGTAGGCAGGTCGAATGCTGGACGGGATGGCGAGACGAAGATGGTCCG
TCCTACGAGAGAGATGCTTTTAGACACGACGCTCACCCATCCCGCATGAG
CAATTGTGGGCACGTGTCGTGTAGAGAGAGGTTAGGGAGCGGCAGCGGTG
ATCCCCTCGAAGAGGACACAAGAGGACACAAGTACTGAGATGGAAAAGAG
CTGCCATCAGAGGCTTGTGGGGTGGTCAGGGAAAAGGTACCTGCATCGCC
CAAATTCGCGCTCGTACCTCGACTTGTCGTCGATCCTGTACACCCTGCGT
TTGTGCGCTGTGTTCCATCCATCCATCCATCCATCCATCCTTCCAGGTGC
TTCCCGGAAGACCTTTTGCTGGCGGTGGAGGCGTTGCCGTCCACCATCGA
CGCGCTCGCAGAGTTGCCAGGAGAGTCTGGAGACAGTGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12774:168..957-

>mRNA_H-canaliculatus_F_contig12774.2307.1 ID=mRNA_H-canaliculatus_F_contig12774.2307.1|Name=mRNA_H-canaliculatus_F_contig12774.2307.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=528bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12774:168..957- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGCTGAGGGGGGGGGTGCCGGAGAGGGCGGTGATGGTGGTGACGA
TGCTGGTGGTGCTGGCGGAGAGGCGGCGGGCGAAGGGGGGGATCAGCGAG
ACTTGCCTGGTGCGGAGGGGGTCGAAGAGGAAGCGAAGGAGCAGCAAGAC
GATCTAGAGCTGATTGCCAGATGGGAGCTGAGGGGGGGGGTGCCGGAGAG
GGCGGTGATGGTGGTGACGATGCTGGTGGTGCTGGCGGAGAGGCGGCGGG
CGAAGGGGGGGATCAGCGAGACTTGCCTGGTGCGGAGGGGGTCGAAGAGG
AAGCGAAGGAGCAGCAAGACGATCTAGAGCTGATTGCCAGGTGCTTCCCG
GAAGACCTTTTGCTGGCGGTGGAGGCGTTGCCGTCCACCATCGACGCGCT
CGCAGAGTTGCCAGGAGAGTCTGGAGACAGTGCTGTGCTTCCCGGAAGAC
CTTTTGCTGGCGGTGGAGGCGTTGCCGTCCACCATCGACGCGCTCGCAGA
GTTGCCAGGAGAGTCTGGAGACAGTGCT
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