mRNA_H-canaliculatus_F_contig12757.2297.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12757.2297.1
Unique NamemRNA_H-canaliculatus_F_contig12757.2297.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: A0A6H5JK68_9PHAE (Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK68_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 6.240e-103
Identity = 156/177 (88.14%), Postives = 168/177 (94.92%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFKV 531
            +QAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQAL+E++SRQIRLLFLLHKYNTPMDYGDDAMSGALAAE+ FSEFFHNVKAALRRTTARDPAR KEPELTL+S L+DAK EV+K LCDDFDTPGA+GALQE+VK VNKY+E KE+A E IVADCVRGAAEYVTKIFKV
Sbjct:  292 AQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALQEHSSRQIRLLFLLHKYNTPMDYGDDAMSGALAAERTFSEFFHNVKAALRRTTARDPARTKEPELTLMSSLSDAKKEVKKCLCDDFDTPGAMGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKV 468          
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: A0A835Z463_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z463_9STRA)

HSP 1 Score: 216 bits (549), Expect = 2.070e-63
Identity = 110/178 (61.80%), Postives = 133/178 (74.72%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGAL-QEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFKV 531
            +QAEA Y+C QWVNYFLHTGHLHIKGFKMSKSLKNFITIKQAL+ +T+RQIR+ FLLHKYN PMDYGD+ M+GALA E+ F EFFH VK+ +R  TA D  R+ E E+ L  +L + K  VR +LCDDFDTP A+  L  ++V+ VNKY++ K  A        VR A EYVT+IFKV
Sbjct:  285 AQAEAHYNCAQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALQTHTARQIRMCFLLHKYNDPMDYGDNTMAGALAIERTFVEFFHAVKSVVRAATAVDELRLGEGEIALYRKLEECKSGVRAALCDDFDTPTAIKLLASDLVRTVNKYIQEKTDAGLKSHYIVVRTAGEYVTRIFKV 462          
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: A0A7S3XKM0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM0_HETAK)

HSP 1 Score: 201 bits (511), Expect = 1.810e-61
Identity = 103/176 (58.52%), Postives = 127/176 (72.16%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFK 528
            +Q+EA   C QWVNYF+HTGHLHIKGFKMSKSLKNFITI+QALE +T RQIRL+FL+ KYN PMDYGD  M+GAL+ E+ F+E+FHNVKA LRR     P +    E+ L   L++AK  V  +LCDDFD P A+  LQ++V+A N YLE     A  +    VR AA+YVTKIF+
Sbjct:   42 AQSEAHAGCRQWVNYFVHTGHLHIKGFKMSKSLKNFITIRQALETHTPRQIRLVFLMSKYNAPMDYGDSTMAGALSIERSFAEYFHNVKAVLRRDGVAGPQKWGAREVALGRALSEAKAGVHAALCDDFDCPSALKELQKLVRASNVYLEGNAAPATLL----VRAAAQYVTKIFR 213          
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: A0A6U0T1A9_9STRA (Cysteine--tRNA ligase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0T1A9_9STRA)

HSP 1 Score: 196 bits (498), Expect = 3.990e-56
Identity = 102/177 (57.63%), Postives = 123/177 (69.49%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFKV 531
            +QAEA   C QWVNYF+H GHLHIKGFKMSKSLKNFITI+ ALE NT+RQIRL FLLHKYN PMDYGD+ MS +L  EK+F EFFHNVKA LR     +  R  E    L + L+D K  V  +L DDFDTP ++ AL ++VKA N YL++      T V   +R AA Y+T IF++
Sbjct:  291 AQAEAHSGCNQWVNYFVHAGHLHIKGFKMSKSLKNFITIRDALENNTARQIRLCFLLHKYNAPMDYGDNTMSHSLVTEKLFVEFFHNVKAVLREGNIINIQRWDESARQLQNTLSDIKSRVDAALRDDFDTPASINALSDLVKATNLYLDSCVARQITPVNLLLRNAAVYITHIFRI 467          
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: A0A7S1Y9A2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y9A2_9STRA)

HSP 1 Score: 193 bits (490), Expect = 4.510e-56
Identity = 99/177 (55.93%), Postives = 123/177 (69.49%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFKV 531
            +QAEA   C QWVNYF+H GHLHIKGFKMSKSLKNFITI+QALE+N++RQIRL FL+HKYN+PMDYGD+ MS A+ AEK+F EFF N KAALR T  +D  +       L   L   +  V  +L DDFDTP  + AL ++VK+ N Y++      ETI +  +   A YVT+IFKV
Sbjct:  145 AQAEAHSGCTQWVNYFVHAGHLHIKGFKMSKSLKNFITIRQALEQNSARQIRLCFLMHKYNSPMDYGDNTMSHAMTAEKLFKEFFLNTKAALRATAMKDSKKWTPATKDLQKTLHQTQAAVDVALKDDFDTPAVMSALADLVKSTNSYMQDN---VETINSLLLNNVAAYVTRIFKV 318          
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: A0A7S1FUV2_9STRA (Cysteine--tRNA ligase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUV2_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.930e-54
Identity = 105/177 (59.32%), Postives = 130/177 (73.45%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFKV 531
            +QAEA+    QWVNYF+H+GHL IK  KMSKSLKNFITI+QAL+ NT+RQIR+LFLLHKYN PMDY DD M+ A   EK FS FF NVK ALR +T +   +  E E  L + +  A+  VRK+L DDFDT  A+ ALQ++VKAVNKYLET +  A+ IV+  VR AA YVT++F+V
Sbjct:  292 AQAEAQSGEKQWVNYFVHSGHLSIKERKMSKSLKNFITIRQALQNNTARQIRMLFLLHKYNAPMDYSDDTMAHATVLEKSFSNFFQNVKVALRSSTIQMSQKWTEHEQDLHNDIDTARYAVRKALLDDFDTATAMTALQDLVKAVNKYLET-QGPAKAIVSLVVRKAAVYVTEMFRV 467          
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: A0A7S3L6K9_9STRA (Cysteine--tRNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6K9_9STRA)

HSP 1 Score: 190 bits (482), Expect = 7.220e-54
Identity = 102/178 (57.30%), Postives = 126/178 (70.79%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALR-RTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFKV 531
            +QAEA+    QWVNYF+H GHLHI+G KMSKSLKNFITI+QALE N++RQIR+LFLLHKYN PMDYGD+ +S A+ AEK F+EFFHNVKAALR +       R     +TL   L D + +V  +L DDFDTP A+  L ++VKA N YLET+      +V   VR  A Y+TK+FKV
Sbjct:  285 AQAEAECGHPQWVNYFVHAGHLHIQGLKMSKSLKNFITIQQALEMNSARQIRMLFLLHKYNAPMDYGDNTLSRAVVAEKSFNEFFHNVKAALRSKDMMEQDQRWTPAAVTLQQTLTDVQAKVGAALRDDFDTPTAMTKLGDLVKATNVYLETE---TTQVVGLVVRSVASYITKMFKV 459          
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: A0A812UK10_SYMMI (Cysteine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UK10_SYMMI)

HSP 1 Score: 189 bits (481), Expect = 7.700e-54
Identity = 94/176 (53.41%), Postives = 123/176 (69.89%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFK 528
            +Q+E   D  QW+NY+LHTGHL+IKGFKMSKSLKNFITI+QALEE+++RQIR  FLLHKYN PMDYGD  M+ A+  EKIFSEFFHNVKA LRR     P  + + ++ L+      K  VR +LCDDFDTP AVG L+++++ VNKY+E+    +  +        A Y+T + +
Sbjct:  273 AQSEGCLDSHQWINYWLHTGHLNIKGFKMSKSLKNFITIRQALEEHSARQIRFCFLLHKYNAPMDYGDGTMTQAVNMEKIFSEFFHNVKATLRRVGVAGPQHVGQRDVALMQFQEATKENVRAALCDDFDTPTAVGHLKDLIREVNKYIESGVVGSAVL-----SSTARYITSVLR 443          
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: A0A7S1XX51_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX51_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.590e-53
Identity = 95/177 (53.67%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFKV 531
            +Q+EA Y C QWVNYF+H+GHLHIKGFKMSKSLKNFITI  ALEE +SRQ+R LFL H+YN PMDYGD  M G L  E+ F EFFHNVKA LR   A  P   ++ E+   S L   K +V  +LCDDFDTP  +  L  +V+  N Y +  E A    V   ++ +A Y+TK+F+V
Sbjct:   34 AQSEAYYGCRQWVNYFVHSGHLHIKGFKMSKSLKNFITIGAALEEQSSRQLRFLFLKHRYNQPMDYGDATMQGVLDMERTFVEFFHNVKATLRALPATGPQFWRQKEIAFESALLAIKQQVHDALCDDFDTPTVLQILLRLVRITNVYSKVFEPAPP--VPLIIKESARYITKMFRV 208          
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Match: D8M9S2_BLAHO (Cysteine--tRNA ligase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M9S2_BLAHO)

HSP 1 Score: 184 bits (466), Expect = 6.840e-52
Identity = 98/177 (55.37%), Postives = 127/177 (71.75%), Query Frame = 1
Query:    1 SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQIRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDPARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLETKEKAAETIVADCVRGAAEYVTKIFKV 531
            +Q+EA  +C Q VNYFLHTGHL+I G KMSKSLKNFITI+Q L++ T  QIR+ FLLHK+NT M+Y D AM  A A EK+F+EFFHNVKA LR+ TA  P R  + E+ L ++L  A+  V   LCDDFDT GA+ AL+ +V+AV +YLET    A+ IVA  V   A +V+++F+V
Sbjct:  241 AQSEAYMECSQSVNYFLHTGHLNIDGLKMSKSLKNFITIRQTLQQFTPSQIRIYFLLHKWNTTMNYSDGAMEEARAKEKLFAEFFHNVKATLRQLTADQPQRWDDAEVQLNAQLDAARTSVHTCLCDDFDTAGAMEALEGLVRAVYRYLET----AKHIVAPLVLSCAGFVSQMFRV 413          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12757.2297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK68_9PHAE6.240e-10388.14Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835Z463_9STRA2.070e-6361.80Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3XKM0_HETAK1.810e-6158.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6U0T1A9_9STRA3.990e-5657.63Cysteine--tRNA ligase n=1 Tax=Eucampia antarctica ... [more]
A0A7S1Y9A2_9STRA4.510e-5655.93Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1FUV2_9STRA2.930e-5459.32Cysteine--tRNA ligase n=2 Tax=Corethron hystrix Ta... [more]
A0A7S3L6K9_9STRA7.220e-5457.30Cysteine--tRNA ligase n=1 Tax=Amphora coffeiformis... [more]
A0A812UK10_SYMMI7.700e-5453.41Cysteine--tRNA ligase n=1 Tax=Symbiodinium microad... [more]
A0A7S1XX51_9STRA1.590e-5353.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
D8M9S2_BLAHO6.840e-5255.37Cysteine--tRNA ligase n=1 Tax=Blastocystis hominis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12757contigH-canaliculatus_F_contig12757:1032..2986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog2850.Phatr26346
KEGG rclassRC00055,RC00523
KEGG koko:K01883
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.DALR_2
EggNOG OGs2XFI6@2836,COG0215@1,KOG2007@2759
EC6.1.1.16
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons4
Model size531
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12757.2297.1prot_H-canaliculatus_F_contig12757.2297.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12757 1032..2986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.0927596-CDS-H-canaliculatus_F_contig12757:1031..11811622928997.0927596-CDS-H-canaliculatus_F_contig12757:1031..1181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12757 1032..1181 +
1696845643.5675297-CDS-H-canaliculatus_F_contig12757:1031..11811696845643.5675297-CDS-H-canaliculatus_F_contig12757:1031..1181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12757 1032..1181 +
1622928997.1113086-CDS-H-canaliculatus_F_contig12757:1887..20311622928997.1113086-CDS-H-canaliculatus_F_contig12757:1887..2031Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12757 1888..2031 +
1696845643.5822582-CDS-H-canaliculatus_F_contig12757:1887..20311696845643.5822582-CDS-H-canaliculatus_F_contig12757:1887..2031Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12757 1888..2031 +
1622928997.1295054-CDS-H-canaliculatus_F_contig12757:2364..25111622928997.1295054-CDS-H-canaliculatus_F_contig12757:2364..2511Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12757 2365..2511 +
1696845643.5937805-CDS-H-canaliculatus_F_contig12757:2364..25111696845643.5937805-CDS-H-canaliculatus_F_contig12757:2364..2511Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12757 2365..2511 +
1622928997.145576-CDS-H-canaliculatus_F_contig12757:2896..29861622928997.145576-CDS-H-canaliculatus_F_contig12757:2896..2986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12757 2897..2986 +
1696845643.6108513-CDS-H-canaliculatus_F_contig12757:2896..29861696845643.6108513-CDS-H-canaliculatus_F_contig12757:2896..2986Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12757 2897..2986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12757.2297.1

>prot_H-canaliculatus_F_contig12757.2297.1 ID=prot_H-canaliculatus_F_contig12757.2297.1|Name=mRNA_H-canaliculatus_F_contig12757.2297.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=177bp
SQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALEENTSRQ
IRLLFLLHKYNTPMDYGDDAMSGALAAEKIFSEFFHNVKAALRRTTARDP
ARMKEPELTLLSRLADAKVEVRKSLCDDFDTPGAVGALQEVVKAVNKYLE
TKEKAAETIVADCVRGAAEYVTKIFKV
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mRNA from alignment at H-canaliculatus_F_contig12757:1032..2986+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12757.2297.1 ID=mRNA_H-canaliculatus_F_contig12757.2297.1|Name=mRNA_H-canaliculatus_F_contig12757.2297.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1955bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12757:1032..2986+ (Hapterophycus canaliculatus Oshoro5f female)
TCTCAGGCGGAGGCGAAGTACGACTGCTGCCAGTGGGTCAACTACTTCCT CCACACTGGCCACCTCCACATCAAGGGCTTCAAGATGTCCAAGTCGCTGA AGAACTTCATCACCATCAAGCAGGCCTTGGAGGAGAACACTTCCAGACAG GTGAGAGCGTGCGCGGTAAAACCGTCGGGATCCTGACGCGGTCCTGATGC GGCGACACCCTGACCAGTGGTCTGCCCTGATAAGGTAGCACCCAAAATTC GCTTGTAACCCCTTCGAAAACATATGGTAGAGAACTGCCGTACATAGCTT GGCGTGCCCCGACCATCGGCCGATCTGTCTCTCGGGACTGCCCCCTGCTT TCACCCCCCCCCCCGCGCGCTGCGGTATCACCCCAGAGTTCTCGTCGGGC CTTGTCCGCACGCCTTTCCTTTTTTTCTCATTCTGTTCGGCTTCTTTTTT TTATGAAAAAGGGTCAGGAACACCACAGGAACTTCCCCCTCCGAGACAAA TTTCATTCTCTCGTGTCGTTTTCCGCCGCGCGGTAAGCCAGAGCCGCTCT CCTTTTGGGCGCAGCTAACCTCGGCCCCACATCCGGAGGTCGCAACCCGA TACAGTATACCCCAAGGCGAGCGGAAGCTCACCGAAGAGGTGATCCGGCC GCTGCCGTACCTTCCCCGCTTGTACTCCCGCTTGTACTCGAGGTCGGCCT GGCCGAAGAGTGGAACGCCGGTGTCACCCCCCCTTCTCCCCGTCGCCGTC CCGCCGTCCTCAACCCTACCCAACCCTACCCAAACCAACCCAAACCAACC CAAGCCAACCCAACCCGGCCGAAACGCTGACCGAACAACGCCCAACTTGG TACCAGATACGGCTGCTGTTCCTGCTGCACAAGTACAACACCCCGATGGA CTACGGAGACGACGCGATGTCCGGGGCCCTCGCGGCGGAGAAGATCTTTA GCGAGTTCTTCCACAACGTCAAGGCGGCCCTGCGGAGAACTACCGCGAGG GTGAGAGGATGTGGGGTCGGGGGGGCGGATCGGGGGGGAGGATAGGTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTTGTGACTG GTCGTCTCCGTGCGCGCGGGCGGCTGTGCGCCGAGGACTGTAGGAATCCT CCGAAGAGTTTTGACTTGTTTTCCGCCGGGGAAGGAGGCACCGTCGGGGC TCTTTGGTTCACGCGGGCTCGGCCGGCACCCCTACCCTTTCTTGCAGGGT GCGCTTCTGCCACACTTGACTACGATCTCGGGCCCCCCGTCGTCCCTCCC CTTGCCGCCCACGATTGATTCCGTCGAAATCAGGACCCCGCGCGAATGAA AGAGCCGGAGCTGACCCTCCTGTCCCGGCTCGCGGACGCGAAGGTCGAGG TGAGGAAGTCCCTGTGCGACGACTTCGACACGCCGGGCGCAGTTGGTGCC CTGCAGGAGGTGGTCAAGGCCGTCAACAAGGTGCGCCGTTGCGATTGGTC CGCTTGTTGTTGTACTCGCGGTTACTCTTTTTTTTTTCCTTTTTTTTTTT TCTTGTTTCGTGATGTCGGTGTGGGTGCAGCGGGAAAACGTGTGCGGCTG GTGTGACTGTCGGCGTTTTCGTCGCGTTTTGGTGATACGATTTCGGCAGG TTTCGAAGCGCTCGCGCTGGTCGTACCACGGCGACCCTCGACCGCATCCC TTCTTCGGCCTTCGTTGTTGTGCGAACGGACATACCGGAATGAAATGCTG CGGTTGGGGCTGGCCTTTGGTTTTTGGCGATGCGATATCGAGAAGCTTGG GAGATGATCGCTGTGGATGCATCATCCCCACCCCTTTGCTTGCGGCTGCC GTGATCGAAAACCAGTATCTGGAGACGAAAGAAAAGGCGGCAGAGACCAT CGTTGCCGACTGCGTACGAGGGGCGGCGGAATACGTGACCAAGATTTTCA AGGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12757:1032..2986+

>mRNA_H-canaliculatus_F_contig12757.2297.1 ID=mRNA_H-canaliculatus_F_contig12757.2297.1|Name=mRNA_H-canaliculatus_F_contig12757.2297.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1062bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12757:1032..2986+ (Hapterophycus canaliculatus Oshoro5f female)
TCTCAGGCGGAGGCGAAGTACGACTGCTGCCAGTGGGTCAACTACTTCCT
CCACACTGGCCACCTCCACATCAAGGGCTTCAAGATGTCCAAGTCGCTGA
AGAACTTCATCACCATCAAGCAGGCCTTGGAGGAGAACACTTCCAGACAG
TCTCAGGCGGAGGCGAAGTACGACTGCTGCCAGTGGGTCAACTACTTCCT
CCACACTGGCCACCTCCACATCAAGGGCTTCAAGATGTCCAAGTCGCTGA
AGAACTTCATCACCATCAAGCAGGCCTTGGAGGAGAACACTTCCAGACAG
ATACGGCTGCTGTTCCTGCTGCACAAGTACAACACCCCGATGGACTACGG
AGACGACGCGATGTCCGGGGCCCTCGCGGCGGAGAAGATCTTTAGCGAGT
TCTTCCACAACGTCAAGGCGGCCCTGCGGAGAACTACCGCGAGGATACGG
CTGCTGTTCCTGCTGCACAAGTACAACACCCCGATGGACTACGGAGACGA
CGCGATGTCCGGGGCCCTCGCGGCGGAGAAGATCTTTAGCGAGTTCTTCC
ACAACGTCAAGGCGGCCCTGCGGAGAACTACCGCGAGGGACCCCGCGCGA
ATGAAAGAGCCGGAGCTGACCCTCCTGTCCCGGCTCGCGGACGCGAAGGT
CGAGGTGAGGAAGTCCCTGTGCGACGACTTCGACACGCCGGGCGCAGTTG
GTGCCCTGCAGGAGGTGGTCAAGGCCGTCAACAAGGACCCCGCGCGAATG
AAAGAGCCGGAGCTGACCCTCCTGTCCCGGCTCGCGGACGCGAAGGTCGA
GGTGAGGAAGTCCCTGTGCGACGACTTCGACACGCCGGGCGCAGTTGGTG
CCCTGCAGGAGGTGGTCAAGGCCGTCAACAAGTATCTGGAGACGAAAGAA
AAGGCGGCAGAGACCATCGTTGCCGACTGCGTACGAGGGGCGGCGGAATA
CGTGACCAAGATTTTCAAGGTTTATCTGGAGACGAAAGAAAAGGCGGCAG
AGACCATCGTTGCCGACTGCGTACGAGGGGCGGCGGAATACGTGACCAAG
ATTTTCAAGGTT
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