mRNA_H-canaliculatus_F_contig1272.2269.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1272.2269.1
Unique NamemRNA_H-canaliculatus_F_contig1272.2269.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1272.2269.1 vs. uniprot
Match: D7FYW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYW2_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 2.590e-120
Identity = 201/279 (72.04%), Postives = 223/279 (79.93%), Query Frame = 3 
Query:   30 MKLSAVPNAALALGFFCHVDSFVVAPLPAG-QHRQISCTSFLSSHMIPSSGGGSRSSHAGKSSSGVVMMGGFGEPVKKKKPVGVGRGQEAYQRQMKSYNGLRGAGAEGVDVYVHREGDDKFIFAGKAAWSTGITAKQALQFQRGLILGHVELLEPRWKDNPAPMRIFTAPLDSEVEVARNMHDLVRVLGPGKGKDVKVDGLTPQEVGLKPELYELGEDYFYVRKLDDGKSPAPPADVMIESMEDLVAKGVVPGKVEGAGEAAAAATEAKEAVTPPPAAE 863
            MK+SAVP+AA+ALG  C VDSF  APL AG Q RQ S       HMIPS  G  RS+    +SS V+MMGGFG P KKKK VGVGRGQ+AYQRQ+KSY+GL  AGAEG DVYVHREGDDKFIF GKAAWS+GIT +QALQFQRGLILGHVELLEP WKD PAPMRIFTAP++SE+EVARN+HDLVRVLGPGKGKDVKVD LTPQEVGL+PELYELGE YFYVRKLDDGK PAPP++VMIE+M++LVAKGVVP K            E  +A  PPPA E
Sbjct:    1 MKISAVPSAAIALGLLCDVDSF--APLTAGWQLRQTSSAW----HMIPS--GRPRSA----TSSRVMMMGGFGGPEKKKKVVGVGRGQDAYQRQVKSYHGLTEAGAEGADVYVHREGDDKFIFMGKAAWSSGITVQQALQFQRGLILGHVELLEPMWKDKPAPMRIFTAPINSEIEVARNIHDLVRVLGPGKGKDVKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVPAK------------ETVDAAAPPPADE 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1272.2269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYW2_ECTSI2.590e-12072.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1272contigH-canaliculatus_F_contig1272:11888..15359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002700.1
Exons4
Model size1749
Cds size837
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1272.2269.1prot_H-canaliculatus_F_contig1272.2269.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1272 11917..14476 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.5108624-UTR-H-canaliculatus_F_contig1272:11887..119161622928993.5108624-UTR-H-canaliculatus_F_contig1272:11887..11916Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1272 11888..11916 +
1696845642.1645079-UTR-H-canaliculatus_F_contig1272:11887..119161696845642.1645079-UTR-H-canaliculatus_F_contig1272:11887..11916Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1272 11888..11916 +
1622928993.5797548-UTR-H-canaliculatus_F_contig1272:14476..153591622928993.5797548-UTR-H-canaliculatus_F_contig1272:14476..15359Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1272 14477..15359 +
1696845642.2105777-UTR-H-canaliculatus_F_contig1272:14476..153591696845642.2105777-UTR-H-canaliculatus_F_contig1272:14476..15359Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1272 14477..15359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.5271893-CDS-H-canaliculatus_F_contig1272:11916..122611622928993.5271893-CDS-H-canaliculatus_F_contig1272:11916..12261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 11917..12261 +
1696845642.1736422-CDS-H-canaliculatus_F_contig1272:11916..122611696845642.1736422-CDS-H-canaliculatus_F_contig1272:11916..12261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 11917..12261 +
1622928993.5422707-CDS-H-canaliculatus_F_contig1272:13028..131001622928993.5422707-CDS-H-canaliculatus_F_contig1272:13028..13100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 13029..13100 +
1696845642.1831734-CDS-H-canaliculatus_F_contig1272:13028..131001696845642.1831734-CDS-H-canaliculatus_F_contig1272:13028..13100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 13029..13100 +
1622928993.5552778-CDS-H-canaliculatus_F_contig1272:13461..136321622928993.5552778-CDS-H-canaliculatus_F_contig1272:13461..13632Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 13462..13632 +
1696845642.1928065-CDS-H-canaliculatus_F_contig1272:13461..136321696845642.1928065-CDS-H-canaliculatus_F_contig1272:13461..13632Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 13462..13632 +
1622928993.5694063-CDS-H-canaliculatus_F_contig1272:14227..144761622928993.5694063-CDS-H-canaliculatus_F_contig1272:14227..14476Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 14228..14476 +
1696845642.2018952-CDS-H-canaliculatus_F_contig1272:14227..144761696845642.2018952-CDS-H-canaliculatus_F_contig1272:14227..14476Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1272 14228..14476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1272.2269.1

>prot_H-canaliculatus_F_contig1272.2269.1 ID=prot_H-canaliculatus_F_contig1272.2269.1|Name=mRNA_H-canaliculatus_F_contig1272.2269.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=279bp
MKLSAVPNAALALGFFCHVDSFVVAPLPAGQHRQISCTSFLSSHMIPSSG
GGSRSSHAGKSSSGVVMMGGFGEPVKKKKPVGVGRGQEAYQRQMKSYNGL
RGAGAEGVDVYVHREGDDKFIFAGKAAWSTGITAKQALQFQRGLILGHVE
LLEPRWKDNPAPMRIFTAPLDSEVEVARNMHDLVRVLGPGKGKDVKVDGL
TPQEVGLKPELYELGEDYFYVRKLDDGKSPAPPADVMIESMEDLVAKGVV
PGKVEGAGEAAAAATEAKEAVTPPPAAE*
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mRNA from alignment at H-canaliculatus_F_contig1272:11888..15359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1272.2269.1 ID=mRNA_H-canaliculatus_F_contig1272.2269.1|Name=mRNA_H-canaliculatus_F_contig1272.2269.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3472bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1272:11888..15359+ (Hapterophycus canaliculatus Oshoro5f female)
CACCAGCTCCCGCCCATCGCCGCGGCAACATGAAGTTATCGGCGGTTCCG
AACGCAGCTTTGGCCCTCGGGTTCTTCTGCCACGTAGATAGCTTCGTCGT
GGCGCCTTTGCCTGCTGGACAGCACCGGCAAATATCATGCACGAGCTTCT
TGTCATCGCACATGATCCCCAGCAGCGGCGGCGGCAGCAGGAGCAGCCAT
GCTGGGAAAAGCAGTAGCGGGGTCGTCATGATGGGCGGATTTGGCGAGCC
GGTGAAGAAGAAGAAGCCCGTGGGTGTTGGGAGGGGGCAGGAGGCGTACC
AGCGTCAGATGAAATCGTACAATGGGCTGAGAGGGGCTGGCGCGGAAGGG
GTCGACGTCTACGTTCACAGAGAGGTGAGTTCCACCACCAGGGTTAACCC
GTTCGCGCGTTGACGCGGCCGTTGTTCCGCTTGTGTTGCTCCAGATTTAG
TAAAGCGCGCGAAGAGAGAGCAGCCTTAACCACTAGACCACCGTCGCCGA
GAACACAGTCAACCCGCGAAGACAAGCGGGTAAAGAGGTCGAGCAAGTGT
GCTGCTGCTGTGCCGCAGGCATGGATGGGGCGAGTCGAGCCTCCGTTCGA
GCCTCTGCCAGCAATGTACGAAACAGCAGTTTCAAGACCAGGATCGGGGG
AGAGCCACCTCATTACTCCACTTCTGTCGACAGCTTCAGTATGGATCCCT
CCTTCCTTGGTTACGTGTCCATCAAATTTGAAGCTTCCGCGACTCACCGG
TAGTCCGCCCCGCACCTTGTCGCTTTGTTGTTTTTCGATGCTTTTCGACG
TTTTTCTACAGTAGTCTTAGTTCTGCTTATTGCACACTATCATACCGCTT
CGAGGGGGTTGGCAGACAATCCTACAGGACCAAACGTGCAGACGTAACAC
TGAACTCCGTCGGCTACAAGACTACTTCAAGTTTTTGGAGGATGTCGTTC
CGCTCGATCAAGCGATCAAGCGAGCCACCGCGGGCTTTTCGCCGACGACG
TACCACACACACGCGTGCACCGTTCACATTCTTCGGAGGCGTTGATTACC
GGGCTATCTAAACGCAGCAGAATTTCTGCGGAACTCAAAGATGAACAACA
CCCCCGTCCCTTCTCACAACTCACAACCCTGACGTCCGCAGGGCGATGAT
AAGTTTATCTTCGCAGGGAAAGCTGCCTGGTCGACAGGAATCACGGCGAA
GCAGGCGCTACAGGTACATGTGCAGTAATAAAACATCCTGGTGGGGTACC
TGTAGAATCAGGCCTCGAAGGGAGCGGGGTGAACCGCGGAGGGATGGCAA
CACCTCCAAGCGCTTCGCTCTCTTTGCCTAGGCTTCGTCAGTGGGCATAC
TGTACAATTTTTCCGCGAAGGGTGATGGGCAGGGGGTCGAGGGAACTAGG
GGCTTCTCACTTATCGCCATGTTTTCCCCTGGTTGGCCAAGCCGTCGGTC
ATTTGGAAGAAGGCACGCTCTCTCCGCTTCATCGCCGCCGCGTGTACAGA
GCAATGCAGCTTACTGCCCCGCACAGGACACAGGACCCCCCCTCCCGTCC
CACCCGACACACTTTTCTTCACAGTTTCAACGAGGGCTGATTCTCGGCCA
CGTAGAACTCCTGGAGCCCAGGTGGAAGGACAACCCGGCGCCGATGCGCA
TTTTTACCGCTCCGCTCGACTCGGAGGTAGAGGTGGCGAGAAACATGCAC
GACCTCGTGAGGGTCCTGGGCCCCGGCAAGGGCAAGGACGTGAAGGTACG
TGCTTATGACACCGTGAGCCTGCTGAAAGCAGGCAATGGCGGAAGCTGTC
ACCGGGTGCGCCGTTGGAAATGTTTCGGGGCGTAAGAGGTTTTTCTAGTG
GCGTTTCTACCGACCACGCACAGGGTTTTCGCCGTCTGCCCAACGTGCGG
ATCGTGGTGAGTGGCTCAGCGTTAGCATCCTGAAGTTTAGGTTTCTTCAA
GGAATGACAGCATGAGTATCCGCGCGCCGGGGTGGCGTACTTCATCCCGC
TATCCAACTTGAGGCATCTAGAGAATGGATGGGAAAATAGCTCTTCCCTT
CAACTGGATTTGCGCGGAACGACGAGATTCTTACGTTAGGTCTGACCGGA
CTCCAACCACGAGATGTCGGCAGGTTGTAGCCGCGTCAATCACACCACTA
GATGGGTCAGCGCTGACTTGTCTAGTGGTGTGATTGACGCCGCTACAAAA
GTTTGGTCGTGGAGGTGTGATTGACGCGGCTACAAGCTACAGCAGCAGCA
AGCAGCAGCATACGCAACAAAAGCAACGAAGCACGCGTGCGTTCTTGAAC
GCACGACCACGACCGCACGCACGCACCCGCGCACACGCAGGTGGACGGGC
TGACTCCGCAAGAGGTGGGCCTGAAGCCCGAGCTGTACGAGCTCGGCGAG
GACTACTTCTACGTCAGGAAGCTCGACGACGGGAAGAGCCCCGCGCCCCC
TGCGGATGTGATGATCGAGAGCATGGAGGACCTTGTCGCCAAGGGGGTCG
TTCCCGGCAAGGTGGAGGGGGCGGGAGAGGCGGCGGCGGCGGCGACAGAA
GCCAAGGAAGCAGTAACTCCGCCCCCGGCAGCCGAATAGGATGCTCCCTT
CAGATAGCGGGGGACGGGGGGGAGTCTCCTTCTAGTTTCAGGACGTCAAT
GTTGCGCCGCTTGGGTGATGGGGTGGTGACCGAGCGGTCGATTGTTTTTG
TTGGTCAGTGGTTGACTCGATGATTTGTGTGCCGAAATGGAGGACGTAAA
GCATGCGGTTGTCGAACGAGTGAGCGAGTGACTTCAGGGCACCGGGAGTA
AAATACAACGCGCCGCGTCACTACGCGACACCTCTACATCAGATTCAGAT
TCGGTGGGAGCGGCGGCTCTGTTCCAAAGAGCTGAATAGATAAAGTTAAT
CGTAGGGGGCGATGGGAAAGGGGGTCACGGGTGACGATGGATTGAGTTGC
AAAGGGTTATAGTGGTTGGGAAAGCACGATAGACGTGCGATGGCCAAGGA
TGCGAAATTAAGACAAAAATACGACTAGAGCGTGGCGGGGGGGGCGGTCT
AAAGTGGGAAGGTGTGATGGCGGGAAAGTTGGGGGTACGCGCCTCGGTGT
GTCGTCGGCCTTCTGCTGCACAGCTGCGGCGGAAATCGTTTCACAACATC
AAGGAGGATTAGTGTACAGCCCACTCGAACGGCTGCGTTGGACAGGGAAG
CTTCGTTGTCCCGTGTTGGGGGGTACTTCCCCCCTGAGAATTCGTCGTTC
TCGCCGGCTGTGGGAGTCCCCATACGAGGGGGCGGTGTTGGGCTCTCTGA
TCCAGTCAAACTTGATTATGGTTGGATTGCCCCATGATGCGGGGAGTACT
ATTCGCTCGACGATGCATGCAGGGCTGCCTACTGGTCTTCCTGGCGCATT
CAAGACGCCCACAACGGCCGCTTTCGAGGTAGTTTAGTGAAACCTCACCA
CACGACACATAACAACGCCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1272:11888..15359+

>mRNA_H-canaliculatus_F_contig1272.2269.1 ID=mRNA_H-canaliculatus_F_contig1272.2269.1|Name=mRNA_H-canaliculatus_F_contig1272.2269.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1674bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1272:11888..15359+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGTTATCGGCGGTTCCGAACGCAGCTTTGGCCCTCGGGTTCTTCTG
CCACGTAGATAGCTTCGTCGTGGCGCCTTTGCCTGCTGGACAGCACCGGC
AAATATCATGCACGAGCTTCTTGTCATCGCACATGATCCCCAGCAGCGGC
GGCGGCAGCAGGAGCAGCCATGCTGGGAAAAGCAGTAGCGGGGTCGTCAT
GATGGGCGGATTTGGCGAGCCGGTGAAGAAGAAGAAGCCCGTGGGTGTTG
GGAGGGGGCAGGAGGCGTACCAGCGTCAGATGAAATCGTACAATGGGCTG
AGAGGGGCTGGCGCGGAAGGGGTCGACGTCTACGTTCACAGAGAGATGAA
GTTATCGGCGGTTCCGAACGCAGCTTTGGCCCTCGGGTTCTTCTGCCACG
TAGATAGCTTCGTCGTGGCGCCTTTGCCTGCTGGACAGCACCGGCAAATA
TCATGCACGAGCTTCTTGTCATCGCACATGATCCCCAGCAGCGGCGGCGG
CAGCAGGAGCAGCCATGCTGGGAAAAGCAGTAGCGGGGTCGTCATGATGG
GCGGATTTGGCGAGCCGGTGAAGAAGAAGAAGCCCGTGGGTGTTGGGAGG
GGGCAGGAGGCGTACCAGCGTCAGATGAAATCGTACAATGGGCTGAGAGG
GGCTGGCGCGGAAGGGGTCGACGTCTACGTTCACAGAGAGGGCGATGATA
AGTTTATCTTCGCAGGGAAAGCTGCCTGGTCGACAGGAATCACGGCGAAG
CAGGCGCTACAGGGCGATGATAAGTTTATCTTCGCAGGGAAAGCTGCCTG
GTCGACAGGAATCACGGCGAAGCAGGCGCTACAGTTTCAACGAGGGCTGA
TTCTCGGCCACGTAGAACTCCTGGAGCCCAGGTGGAAGGACAACCCGGCG
CCGATGCGCATTTTTACCGCTCCGCTCGACTCGGAGGTAGAGGTGGCGAG
AAACATGCACGACCTCGTGAGGGTCCTGGGCCCCGGCAAGGGCAAGGACG
TGAAGTTTCAACGAGGGCTGATTCTCGGCCACGTAGAACTCCTGGAGCCC
AGGTGGAAGGACAACCCGGCGCCGATGCGCATTTTTACCGCTCCGCTCGA
CTCGGAGGTAGAGGTGGCGAGAAACATGCACGACCTCGTGAGGGTCCTGG
GCCCCGGCAAGGGCAAGGACGTGAAGGTGGACGGGCTGACTCCGCAAGAG
GTGGGCCTGAAGCCCGAGCTGTACGAGCTCGGCGAGGACTACTTCTACGT
CAGGAAGCTCGACGACGGGAAGAGCCCCGCGCCCCCTGCGGATGTGATGA
TCGAGAGCATGGAGGACCTTGTCGCCAAGGGGGTCGTTCCCGGCAAGGTG
GAGGGGGCGGGAGAGGCGGCGGCGGCGGCGACAGAAGCCAAGGAAGCAGT
AACTCCGCCCCCGGCAGCCGAATAGGTGGACGGGCTGACTCCGCAAGAGG
TGGGCCTGAAGCCCGAGCTGTACGAGCTCGGCGAGGACTACTTCTACGTC
AGGAAGCTCGACGACGGGAAGAGCCCCGCGCCCCCTGCGGATGTGATGAT
CGAGAGCATGGAGGACCTTGTCGCCAAGGGGGTCGTTCCCGGCAAGGTGG
AGGGGGCGGGAGAGGCGGCGGCGGCGGCGACAGAAGCCAAGGAAGCAGTA
ACTCCGCCCCCGGCAGCCGAATAG
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