mRNA_H-canaliculatus_F_contig12709.2260.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE) HSP 1 Score: 275 bits (704), Expect = 3.420e-83 Identity = 129/138 (93.48%), Postives = 135/138 (97.83%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEIDCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
++VT+DAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADR AGKHYRQVFRNNMQEK+ PEIDCDY+G DFTCITFTPDWKRFHMTGME+DTIALLRK
Sbjct: 50 LKVTLDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRDAGKHYRQVFRNNMQEKQAPEIDCDYEGPDFTCITFTPDWKRFHMTGMESDTIALLRK 187
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: A0A7S3XY05_HETAK (DNA topoisomerase 2 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY05_HETAK) HSP 1 Score: 201 bits (512), Expect = 1.290e-60 Identity = 94/139 (67.63%), Postives = 116/139 (83.45%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEI-DCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
+QVT++ +G+ISVWNDG+GIP+ +HKEH+IYVPELIFG+LLTGSNFDDD+KKT GGRNG+GAKL NI+S+EFVVETAD GK +R+VFRNNMQE + E+ D D DG DFTCITFTPD +RFH+ M+ D + LL K
Sbjct: 64 IQVTIEQGAGRISVWNDGSGIPVVVHKEHNIYVPELIFGHLLTGSNFDDDEKKTVGGRNGYGAKLTNIFSSEFVVETADGAHGKRFRKVFRNNMQESDPAEVEDYDGDGEDFTCITFTPDLRRFHLDRMDDDFVGLLMK 202
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: A0A835YRC0_9STRA (DNA topoisomerase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC0_9STRA) HSP 1 Score: 202 bits (514), Expect = 1.140e-57 Identity = 98/138 (71.01%), Postives = 113/138 (81.88%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEIDCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
++VTVD +G ISVWN+G GIPI H EH Y+PELIFG+LLTGSNF+D +KKTTGGRNG+GAKLANI+STEFVVETAD K YRQVFRNNM +K+EP I DYDG +FTCITF PDW+RF M GME DT ALL+K
Sbjct: 46 LKVTVDKAAGSISVWNNGRGIPIARHAEHGCYIPELIFGHLLTGSNFNDQEKKTTGGRNGYGAKLANIFSTEFVVETADGATRKRYRQVFRNNMGDKDEPVIK-DYDGDEFTCITFKPDWRRFGMAGMEDDTEALLQK 182
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: A0A1V9ZH33_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZH33_9STRA) HSP 1 Score: 199 bits (507), Expect = 1.140e-56 Identity = 94/138 (68.12%), Postives = 115/138 (83.33%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEIDCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
++VT D E+G ISVWN+G GIP+ HKEH +YVPELIFG+LLTGSNFDD++KKTTGGRNG+GAKLANI+STEF+VETA+R GK YRQVF+ NM KEEP+I + DFTCITFTPD+ RF MTG+++D IAL +K
Sbjct: 108 LKVTFDQETGAISVWNNGRGIPVVEHKEHKVYVPELIFGHLLTGSNFDDNKKKTTGGRNGYGAKLANIFSTEFIVETANREDGKRYRQVFKKNMSVKEEPKI-TSWSKKDFTCITFTPDFTRFQMTGLDSDIIALFKK 244
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: A0A397CXW9_9STRA (DNA topoisomerase 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CXW9_9STRA) HSP 1 Score: 197 bits (502), Expect = 2.080e-56 Identity = 93/138 (67.39%), Postives = 114/138 (82.61%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEIDCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
++VT+D+E G+ISVWN+G GIP+ MHKEH++YVPELIFG+LLTGSNFDD +KKTTGGRNG+GAKLANI+S EFVVETA R GK YRQVF +NM K P+I + DFTCITFTPD+KRF MTG++ D +AL +K
Sbjct: 297 LKVTIDSEKGEISVWNNGNGIPVVMHKEHNVYVPELIFGHLLTGSNFDDKKKKTTGGRNGYGAKLANIFSKEFVVETASREQGKRYRQVFSDNMSVKGAPKI-TSWSKKDFTCITFTPDFKRFQMTGLDDDIVALFKK 433
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: A0A1V9Z4P5_9STRA (DNA topoisomerase 2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4P5_9STRA) HSP 1 Score: 198 bits (504), Expect = 2.850e-56 Identity = 93/138 (67.39%), Postives = 115/138 (83.33%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEIDCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
++VT D E+G ISVWN+G GIP+ +HKEH++YVPELIFG+LLTGSNFDD++KKTTGGRNG+GAKLANI+STEF+VETA + GK YRQVF NNM EK EP+I + DFTCITFTPD+ RF MTG++ D I+L +K
Sbjct: 114 LKVTFDQETGAISVWNNGRGIPVVLHKEHNVYVPELIFGHLLTGSNFDDNKKKTTGGRNGYGAKLANIFSTEFIVETASKEDGKRYRQVFTNNMGEKGEPKITA-WSKKDFTCITFTPDFARFQMTGLDDDIISLFKK 250
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: W4H243_9STRA (DNA topoisomerase 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H243_9STRA) HSP 1 Score: 197 bits (502), Expect = 5.280e-56 Identity = 93/138 (67.39%), Postives = 114/138 (82.61%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEIDCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
++VT+D+E G+ISVWN+G GIP+ MHKEH++YVPELIFG+LLTGSNFDD +KKTTGGRNG+GAKLANI+S EFVVETA R GK YRQVF +NM K P+I + DFTCITFTPD+KRF MTG++ D +AL +K
Sbjct: 104 LKVTIDSEKGEISVWNNGNGIPVVMHKEHNVYVPELIFGHLLTGSNFDDKKKKTTGGRNGYGAKLANIFSKEFVVETASREQGKRYRQVFSDNMSVKGAPKI-TSWSKKDFTCITFTPDFKRFQMTGLDDDIVALFKK 240
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: A0A397FYY6_9STRA (DNA topoisomerase 2 n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FYY6_9STRA) HSP 1 Score: 197 bits (502), Expect = 5.340e-56 Identity = 93/138 (67.39%), Postives = 114/138 (82.61%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEIDCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
++VT+D+E G+ISVWN+G GIP+ MHKEH++YVPELIFG+LLTGSNFDD +KKTTGGRNG+GAKLANI+S EFVVETA R GK YRQVF +NM K P+I + DFTCITFTPD+KRF MTG++ D +AL +K
Sbjct: 408 LKVTIDSEKGEISVWNNGNGIPVVMHKEHNVYVPELIFGHLLTGSNFDDKKKKTTGGRNGYGAKLANIFSKEFVVETASREQGKRYRQVFSDNMSVKGAPKI-TSWSKKDFTCITFTPDFKRFQMTGLDDDIVALFKK 544
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: A0A3R6Z1T3_9STRA (DNA topoisomerase 2 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Z1T3_9STRA) HSP 1 Score: 197 bits (501), Expect = 7.170e-56 Identity = 92/138 (66.67%), Postives = 114/138 (82.61%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEIDCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
++VT+DAE G+ISVWN+G GIP+ MH+EH++YVPELIFG+LLTGSNFDD +KKTTGGRNG+GAKLANI+S EF+VETA R GK YRQVF NNM K P+I + DFTCITFTPD++RF MTG++ D +AL +K
Sbjct: 377 LKVTIDAEKGEISVWNNGNGIPVVMHQEHNVYVPELIFGHLLTGSNFDDKKKKTTGGRNGYGAKLANIFSKEFIVETASREQGKRYRQVFSNNMSVKGAPKI-TSWSKKDFTCITFTPDFERFQMTGLDDDIVALFKK 513
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Match: A0A024UPN1_9STRA (DNA topoisomerase 2 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPN1_9STRA) HSP 1 Score: 197 bits (501), Expect = 7.220e-56 Identity = 92/138 (66.67%), Postives = 114/138 (82.61%), Query Frame = 1
Query: 1 VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDQKKTTGGRNGFGAKLANIYSTEFVVETADRRAGKHYRQVFRNNMQEKEEPEIDCDYDGTDFTCITFTPDWKRFHMTGMEADTIALLRK 414
++VT+DAE G+ISVWN+G GIP+ MH+EH++YVPELIFG+LLTGSNFDD +KKTTGGRNG+GAKLANI+S EF+VETA R GK YRQVF NNM K P+I + DFTCITFTPD++RF MTG++ D +AL +K
Sbjct: 94 LKVTIDAEKGEISVWNNGNGIPVVMHQEHNVYVPELIFGHLLTGSNFDDKKKKTTGGRNGYGAKLANIFSKEFIVETASREQGKRYRQVFSNNMSVKGAPKI-TSWSKKDFTCITFTPDFERFQMTGLDDDIVALFKK 230 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12709.2260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12709.2260.1 >prot_H-canaliculatus_F_contig12709.2260.1 ID=prot_H-canaliculatus_F_contig12709.2260.1|Name=mRNA_H-canaliculatus_F_contig12709.2260.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=138bp VQVTVDAESGKISVWNDGAGIPIQMHKEHHIYVPELIFGNLLTGSNFDDDback to top mRNA from alignment at H-canaliculatus_F_contig12709:120..1251+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12709.2260.1 ID=mRNA_H-canaliculatus_F_contig12709.2260.1|Name=mRNA_H-canaliculatus_F_contig12709.2260.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1132bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12709:120..1251+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12709:120..1251+ >mRNA_H-canaliculatus_F_contig12709.2260.1 ID=mRNA_H-canaliculatus_F_contig12709.2260.1|Name=mRNA_H-canaliculatus_F_contig12709.2260.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12709:120..1251+ (Hapterophycus canaliculatus Oshoro5f female)back to top |