mRNA_H-canaliculatus_F_contig12696.2244.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12696.2244.1
Unique NamemRNA_H-canaliculatus_F_contig12696.2244.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12696.2244.1 vs. uniprot
Match: D7FTH2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH2_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.970e-5
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 SFGVDGSKKRDFCSQHKEDAMVSVVNKRCRHSSCSK 108
            SFG DGSKK +FCSQH++  MV VV ++C H  C+K
Sbjct:    5 SFGTDGSKKAEFCSQHRQQGMVDVVTRKCGHPGCTK 40
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BLAST of mRNA_H-canaliculatus_F_contig12696.2244.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 5.200e-5
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 SFGVDGSKKRDFCSQHKEDAMVSVVNKRCRHSSCSKTAIFG 123
            S+G+DGSKK +FCS+H +  M +V  KRC H+ C K   +G
Sbjct:   41 SYGIDGSKKAEFCSKHSKPGMTNVTKKRCGHAGCIKQPSYG 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12696.2244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTH2_ECTSI1.970e-558.33EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FY22_ECTSI5.200e-548.78EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12696contigH-canaliculatus_F_contig12696:1858..3096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score62.0
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog654926.Q8QNQ2_ESV1K
EggNOG OGs4QCFE@10239,4QUWG@35237
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size714
Cds size714
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.6124575-CDS-H-canaliculatus_F_contig12696:1857..20801622928989.6124575-CDS-H-canaliculatus_F_contig12696:1857..2080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12696 1858..2080 -
1696845640.414877-CDS-H-canaliculatus_F_contig12696:1857..20801696845640.414877-CDS-H-canaliculatus_F_contig12696:1857..2080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12696 1858..2080 -
1622928989.65506-CDS-H-canaliculatus_F_contig12696:2605..30961622928989.65506-CDS-H-canaliculatus_F_contig12696:2605..3096Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12696 2606..3096 -
1696845640.4266095-CDS-H-canaliculatus_F_contig12696:2605..30961696845640.4266095-CDS-H-canaliculatus_F_contig12696:2605..3096Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12696 2606..3096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12696.2244.1prot_H-canaliculatus_F_contig12696.2244.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12696 1858..3096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12696.2244.1

>prot_H-canaliculatus_F_contig12696.2244.1 ID=prot_H-canaliculatus_F_contig12696.2244.1|Name=mRNA_H-canaliculatus_F_contig12696.2244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=238bp
SFGVDGSKKRDFCSQHKEDAMVSVVNKRCRHSSCSKTAIFGADGGKKEFC
SQHKKDGMVTFVNSRCSHSSCSKTASFGVDGSRKREFCVQHKKDGMVRVY
KYKQPPSKTSKRKRVAREQNNGCSESGGCSDSDSGIVSRRRKWSSFQSSD
SDSVSKSNASDEDCEAKQKNLTLSLADPIVFFNHTSASDKRNIRSHPRAP
SQHQQTPWRQLRVLLLPLLRRREVWTATPWPMATIFF*
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mRNA from alignment at H-canaliculatus_F_contig12696:1858..3096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12696.2244.1 ID=mRNA_H-canaliculatus_F_contig12696.2244.1|Name=mRNA_H-canaliculatus_F_contig12696.2244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1239bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12696:1858..3096- (Hapterophycus canaliculatus Oshoro5f female)
TCATTCGGCGTGGATGGTAGCAAGAAGAGAGACTTCTGTTCTCAGCACAA
GGAAGACGCCATGGTGAGTGTCGTGAACAAGAGGTGCCGTCACTCCAGCT
GCTCCAAGACTGCAATATTCGGCGCGGATGGTGGCAAAAAAGAGTTCTGC
TCTCAGCACAAGAAAGACGGCATGGTGACTTTCGTGAACAGTAGATGCAG
TCACTCCAGCTGCTCCAAGACTGCATCATTCGGCGTGGATGGTAGCAGGA
AGAGGGAGTTCTGTGTCCAGCACAAGAAAGACGGCATGGTGAGAGTCTAC
AAGTACAAGCAGCCACCATCAAAGACCAGCAAACGCAAGCGCGTGGCGCG
CGAGCAGAACAACGGATGCAGCGAGAGCGGCGGCTGCAGCGACAGCGATT
CCGGAATTGTAAGCAGACGGAGAAAATGGTCGAGCTTCCAGAGCAGCGAC
AGCGATTCCGTCAGCAAAAGCAACGCTAGCGATGAAGACTGGTCACCATC
CGACGGGAGCGCTGTAAGTGGTATTGATCTCACGCGGGTATTGAAAACAC
AAGAATACAACCTGCGTCCCGAATAGCCAGCTAACTTTTGTTTCAACGTC
CACAACTTGGAAGGTAAGTAGCTGGACTCTGGTCACACAACGCGCCACGA
GATCTAGCGCGAGCTGTGAGGGCACCAGGGTCGAGACGCGGAAGGGTCGC
ACCGCCTCCGTATACACCGGTATCCGACATGTGGTAAGTGTACGTACAAT
TCACCGTCAGTGCAAACACTTTCACAATTTCTTTTAACCAGTACATCACA
CCAATGGCATCTCTCCAGGAAGAGGACAAAGAGGAGGACGATGACACCCC
GGTGGCGGCAGATCCGAGTCCCACACCTACGCCAACGTCGACCAGTTCGT
CGGATGAGGGAGAGGTCGAGGAGTCTAGCGAGGAGCTTGCCGCTACCGAC
ATAGACGAATCTTGTGTGAGTGTCGGGTGGGCCCGGAGTTTTATACATAC
CTCATGGTCGAATCAGCGAAGCGAAACAGAAAAATCTAACGTTATCCCTC
GCTGATCCCATTGTTTTTTTCAACCACACCAGTGCATCGGACAAACGGAA
CATCCGCAGCCACCCCAGGGCACCGTCGCAGCACCAGCAAACCCCATGGC
GGCAGCTCCGGGTCCTCCTCCTGCCTCTGCTCCGTCGGAGGGAGGTGTGG
ACAGCGACGCCGTGGCCGATGGCTACGATTTTCTTCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12696:1858..3096-

>mRNA_H-canaliculatus_F_contig12696.2244.1 ID=mRNA_H-canaliculatus_F_contig12696.2244.1|Name=mRNA_H-canaliculatus_F_contig12696.2244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1428bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12696:1858..3096- (Hapterophycus canaliculatus Oshoro5f female)
TCATTCGGCGTGGATGGTAGCAAGAAGAGAGACTTCTGTTCTCAGCACAA
GGAAGACGCCATGGTGAGTGTCGTGAACAAGAGGTGCCGTCACTCCAGCT
GCTCCAAGACTGCAATATTCGGCGCGGATGGTGGCAAAAAAGAGTTCTGC
TCTCAGCACAAGAAAGACGGCATGGTGACTTTCGTGAACAGTAGATGCAG
TCACTCCAGCTGCTCCAAGACTGCATCATTCGGCGTGGATGGTAGCAGGA
AGAGGGAGTTCTGTGTCCAGCACAAGAAAGACGGCATGGTGAGAGTCTAC
AAGTACAAGCAGCCACCATCAAAGACCAGCAAACGCAAGCGCGTGGCGCG
CGAGCAGAACAACGGATGCAGCGAGAGCGGCGGCTGCAGCGACAGCGATT
CCGGAATTGTAAGCAGACGGAGAAAATGGTCGAGCTTCCAGAGCAGCGAC
AGCGATTCCGTCAGCAAAAGCAACGCTAGCGATGAAGACTGTCATTCGGC
GTGGATGGTAGCAAGAAGAGAGACTTCTGTTCTCAGCACAAGGAAGACGC
CATGGTGAGTGTCGTGAACAAGAGGTGCCGTCACTCCAGCTGCTCCAAGA
CTGCAATATTCGGCGCGGATGGTGGCAAAAAAGAGTTCTGCTCTCAGCAC
AAGAAAGACGGCATGGTGACTTTCGTGAACAGTAGATGCAGTCACTCCAG
CTGCTCCAAGACTGCATCATTCGGCGTGGATGGTAGCAGGAAGAGGGAGT
TCTGTGTCCAGCACAAGAAAGACGGCATGGTGAGAGTCTACAAGTACAAG
CAGCCACCATCAAAGACCAGCAAACGCAAGCGCGTGGCGCGCGAGCAGAA
CAACGGATGCAGCGAGAGCGGCGGCTGCAGCGACAGCGATTCCGGAATTG
TAAGCAGACGGAGAAAATGGTCGAGCTTCCAGAGCAGCGACAGCGATTCC
GTCAGCAAAAGCAACGCTAGCGATGAAGACTGCGAAGCGAAACAGAAAAA
TCTAACGTTATCCCTCGCTGATCCCATTGTTTTTTTCAACCACACCAGTG
CATCGGACAAACGGAACATCCGCAGCCACCCCAGGGCACCGTCGCAGCAC
CAGCAAACCCCATGGCGGCAGCTCCGGGTCCTCCTCCTGCCTCTGCTCCG
TCGGAGGGAGGTGTGGACAGCGACGCCGTGGCCGATGGCTACGATTTTCT
TCTAGCGAAGCGAAACAGAAAAATCTAACGTTATCCCTCGCTGATCCCAT
TGTTTTTTTCAACCACACCAGTGCATCGGACAAACGGAACATCCGCAGCC
ACCCCAGGGCACCGTCGCAGCACCAGCAAACCCCATGGCGGCAGCTCCGG
GTCCTCCTCCTGCCTCTGCTCCGTCGGAGGGAGGTGTGGACAGCGACGCC
GTGGCCGATGGCTACGATTTTCTTCTAG
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