mRNA_H-canaliculatus_F_contig12690.2238.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12690.2238.1
Unique NamemRNA_H-canaliculatus_F_contig12690.2238.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12690.2238.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 5.700e-36
Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:  103 SKNLRKTEAELTVALASLDPEIRGRLSGLVKPDELDPFEVRALGKFDVADALDILDRFAEADLRKVRNRSGFLAGIMRKHGSAA 354
            SKNLRKTEAEL   +A+LD ++RGRLS LVKPDELDPFEVRALGKFD ADALDILDRFAEADLR+VRNRSGFLAGIMRKHGSA+
Sbjct:  987 SKNLRKTEAELAATVAALDADVRGRLSELVKPDELDPFEVRALGKFDTADALDILDRFAEADLRRVRNRSGFLAGIMRKHGSAS 1070
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BLAST of mRNA_H-canaliculatus_F_contig12690.2238.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.320e-13
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:  142 ALASLDPEIRGRL-----SGLVKPDELDPFEVRALGKFDVADALDILDRFAEADLRKVRNRSGFLAGIMRKHGS 348
            AL +L  E+R  +       L+K  ELD FE+RAL +F+  DAL IL+RFAEADLRKV N+SGFLAGIMRK+GS
Sbjct: 1089 ALRALPEEVRAYIVKLQDDRLLKATELDAFELRALSRFEPDDALRILERFAEADLRKVGNKSGFLAGIMRKYGS 1162
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BLAST of mRNA_H-canaliculatus_F_contig12690.2238.1 vs. uniprot
Match: A0A7S2AI36_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AI36_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.020e-5
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  151 SLDPEIRGRLS-----GLVKPDELDPFEVRALGKFDVADALDILDRFAEADLRKVRNRSGFLAGIMRK 339
            +L  +IR RL      GL+  DEL  +E++ LG   + DAL+ +  FAEADL+ + N+SG LAGIMR+
Sbjct:   74 ALPSKIRARLDALCNEGLLGQDELAVYELQTLGTLGLDDALEAVRCFAEADLQTIGNKSGLLAGIMRR 141
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BLAST of mRNA_H-canaliculatus_F_contig12690.2238.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.430e-5
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:  142 ALASLDPEIRGRLSGLV-----KPDELDPFEVRALGKFDVADALDILDRFAEADLRKVRNRSGFLAGIMRK 339
            AL+ + P++R  L  LV     K +ELD FE+ AL   ++   L ++  F E+DLRK  N+SG LAGI+R+
Sbjct:  965 ALSGMLPQVREALEALVRQRLVKLEELDTFELTALAALELEQGLQVVAAFGESDLRKAGNKSGMLAGILRR 1035
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BLAST of mRNA_H-canaliculatus_F_contig12690.2238.1 vs. uniprot
Match: A0A7S4FHT4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FHT4_9EUGL)

HSP 1 Score: 54.3 bits (129), Expect = 2.950e-5
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:  151 SLDPEIRGRL-----SGLVKPDELDPFEVRALGKFDVADALDILDRFAEADLRKVRNRSGFLAGIMRK 339
            SL P++  +L     SG+V PDELD   + +L +F     LDIL +F+EA+ + + N+SGF+AGIMR+
Sbjct:  223 SLAPQVDAQLQALFASGVVAPDELDSKILDSLAQFPPEVGLDILGKFSEANPQNISNKSGFMAGIMRR 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12690.2238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LHP2_ECTSI5.700e-3685.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCK8_9STRA2.320e-1359.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2AI36_9STRA1.020e-545.59Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6U1AHC6_9STRA1.430e-542.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4FHT4_9EUGL2.950e-544.12Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12690contigH-canaliculatus_F_contig12690:202..3039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue4.2e-32
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size587
Cds size585
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12690.2238.1prot_H-canaliculatus_F_contig12690.2238.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12690 202..3038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.1739712-CDS-H-canaliculatus_F_contig12690:201..3101622928989.1739712-CDS-H-canaliculatus_F_contig12690:201..310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12690 202..310 +
1696845640.2470205-CDS-H-canaliculatus_F_contig12690:201..3101696845640.2470205-CDS-H-canaliculatus_F_contig12690:201..310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12690 202..310 +
1622928989.1915774-CDS-H-canaliculatus_F_contig12690:1465..16281622928989.1915774-CDS-H-canaliculatus_F_contig12690:1465..1628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12690 1466..1628 +
1696845640.2622843-CDS-H-canaliculatus_F_contig12690:1465..16281696845640.2622843-CDS-H-canaliculatus_F_contig12690:1465..1628Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12690 1466..1628 +
1622928989.2089386-CDS-H-canaliculatus_F_contig12690:2725..30381622928989.2089386-CDS-H-canaliculatus_F_contig12690:2725..3038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12690 2726..3038 +
1696845640.2810178-CDS-H-canaliculatus_F_contig12690:2725..30381696845640.2810178-CDS-H-canaliculatus_F_contig12690:2725..3038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12690 2726..3038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12690.2238.1

>prot_H-canaliculatus_F_contig12690.2238.1 ID=prot_H-canaliculatus_F_contig12690.2238.1|Name=mRNA_H-canaliculatus_F_contig12690.2238.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=195bp
GGVASRGAGGRRRFLKESDRKEAAAAEAAAAAATSKNLRKTEAELTVALA
SLDPEIRGRLSGLVKPDELDPFEVRALGKFDVADALDILDRFAEADLRKV
RNRSGFLAGIMRKHGSAATTTKTSDAAAPAAAAAAAAASPGAAGNTASEV
LATSEAPPTATKPSSAADAEDEEEEQGPGRDADTEAAAAAAAAEE
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mRNA from alignment at H-canaliculatus_F_contig12690:202..3039+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12690.2238.1 ID=mRNA_H-canaliculatus_F_contig12690.2238.1|Name=mRNA_H-canaliculatus_F_contig12690.2238.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2838bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12690:202..3039+ (Hapterophycus canaliculatus Oshoro5f female)
GGAGGAGTGGCATCGAGGGGGGCGGGCGGGCGTCGGCGGTTCCTGAAAGA
GTCCGACCGGAAGGAAGCTGCCGCGGCTGAGGCTGCGGCGGCCGCGGCTA
CTTCGAAGAGTGAGTGAGCGCCTGGAGTTTGGTGGGGATGCAAGAGAGGG
ACACAGATAGATGGACGGAGGCGGAGCCAGGGGCAGGGGTAGAGGCAGAG
GCAGAGGTAGAGGCAGAGGAAGAGGCAGAGGCAGAGGCAGAGGCAGAGGC
AGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAG
AGGCAGAAGCAGAGGCAGAGGCAGAGGCAGAGACAGAGACAGAGACAGAG
GCAGAGGCAGAGACAAGAGACAGGTGCAACGTTGTGTGGCTCGAGGGAAG
CGGCTCGTTGTCGTCGAAGAGCGGGGCTCGGCGACGGGGCGCTGACGCGA
TACAAGCAGGCGAGTTCGCACCTTCGTAGGAAAAGGTGCCCGAGGGGAGG
CGTCAGAGGCTTGACTGCGTGGCTTGGCGGAGCGAGACATTAGCGAGGTC
GGGGATCGGCTCCCGCGTTGTTCCCGCGTCGGGCCGCTCGTTCGGTCGTT
GCGAGGCGACCGGTCACGGCGAAGACTTCTGTGTACGCCGATCGCAGAGG
CAGCGAGATTGATTGTACAGAGATTCCTTTTTTTTTGGCGTTGCGTTTGG
AGTGAGCAGGAAACGAGAGGGCGCTCGGGGGTCTTTAGTAGAGGATGAGC
GCGCGCGCACTGGGTCGGTGCGCGTGAGGGGTCTTCGTTGGCGGACACGT
GCGAAGGAAGTCGAGGCGGATCGCCTCAGATCTATCTTGACAACAAGAAG
GGGGAAGGGGGTGAGAGATTGGTCGGGATGTTTTCATGCGCACCGGGCAG
AATTTAGCGCGGCCCCTCGTGTGTTCGGAGGCACTGGTTAGCTCGCTCGA
GAAAAGGTCGCTTGCAGGAGGATCGCCCTCATCGCCCGGTGCATGCTGTC
GAACGTGACCGTCGTGACCACCACCACCGCCGCAACCACCATCGCCGCCG
CCGCCATCATCGCTGCCGCCACCATCGCTGCCGCCGCCACCACCACCACC
ACCACCACCACCACCACGACGTACCCGTCTCTTCTGCAGCTGATTTATCG
AGCGTTTTCCGCTCTTCCCTCTCGTGCCCCGTTCCTGCTCCCTCTCCCCA
ATCCTCCCCTCTTCCGGCGCTGACACCAACCTTAACCGCGTGAACATGGG
AAACACGGAGACAGATCTCCGAAAGACGGAGGCCGAGCTGACGGTCGCCC
TTGCGTCCCTCGACCCGGAGATCCGAGGCAGGCTCTCGGGGCTGGTCAAG
CCCGACGAGCTCGATCCCTTCGAGGTTCGAGCGCTGGGCAAGTTCGACGT
CGCGGACGCGTTGGACATCCTCGACCGGTGGGTTTCGATACGAAGTGGGG
AAACCAAAGAGGACGAGTGCAGCTTGCAAGCACAAGACAAAATATTTTTC
GTTTCTTTTAGGGTCGCTGATCGAGCCTGGTCTGCGGCCACGTACTTTCA
AAGAATTTTTTCCCGACGTCTAGAAATGAATCCGGAAGAGAGGTTTCATA
CTGCAATGTAAGGTGGTCTATCTTTCGGACGGACGGACTTTTTTACGATA
GTTTCAGCCCCTTTTTTGTGGGAGCACCGCCGGTGGTTTTGACGACTGCC
CTACACATGATGATCGAATGTTCGGGCAGACAAACGGCCACTTTGTGCCG
CTGGTACACGTGCATCGCCGTGCGCTCGGGCCGGTTTTCGCAAAAGCCGC
CCAGCTATGTTGGTGTTCGTTCGAAACTCGTGTGAATATTTGGATGAGAA
CATTTCAACATGGTGCAAGCAGGCGTGGTTGGAAGGAGAGATCTCGGGAC
AAGAGCAGATGTAGCGAGAGATAGGATGTACACTTCTCTAATGCGTCTCC
ACATCGCCGCAAATCTCTAGCGGAGAGAGCTACATACAGTACCACGGTGG
GATACAAATGCCGGCTGCTCCAAAAGCGAATAATTTCTCGAGTTCGTATG
GTTGTCATAGATTTTACGATTCTTTTACGAAAACAAAAGTTCATGATCTC
GCACGAAGTCAGTACCTGGTGTGTATGTACATCTTAGCATCAGTGCGTCA
CGCACTGACGAACGTCCTCGAGCATGGAAGTGGTTGTGCACAGGAACAGA
GACGAGGGGACCATGACAGCTTCGGGCGCTGTCTTTGTTTTTATTTCACG
TCGTTCACGCCGTGATGGTAATCCTCTCGCTTCGCCCGGCAAGCTCGACA
ATGCCATCTTTCTGGCGAGCAATAGAAAAGCCCGCTTTCGCTGCGAAACT
GCTGTGAAATACGTCGTACGCATACAACATCCGCTCCGCTCTTTCCTTGG
CTGTGCACGTATCGGACAGCCCCTTTCTGTCTCTGAAAACAAGAAGACGT
TTTCCTCACACATGCAGACCAGGCTCCGTACATGAGCCGATCTTCTCTTG
CGATCGTGATCCCCGTTCCCTCAGATTCGCGGAGGCTGACCTCCGCAAGG
TGCGGAACAGGAGCGGTTTCTTGGCCGGGATCATGAGAAAGCACGGCTCC
GCAGCGACGACGACCAAGACATCTGATGCTGCCGCTCCTGCGGCGGCGGC
GGCGGCAGCAGCAGCATCACCAGGGGCCGCAGGTAACACGGCGTCCGAGG
TGTTGGCAACGTCGGAGGCTCCGCCGACAGCGACGAAACCAAGCTCGGCC
GCAGACGCCGAAGATGAGGAGGAAGAACAAGGGCCAGGACGAGACGCAGA
CACAGAGGCGGCAGCAGCAGCAGCAGCAGCCGAGGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12690:202..3039+

>mRNA_H-canaliculatus_F_contig12690.2238.1 ID=mRNA_H-canaliculatus_F_contig12690.2238.1|Name=mRNA_H-canaliculatus_F_contig12690.2238.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1170bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12690:202..3039+ (Hapterophycus canaliculatus Oshoro5f female)
GGAGGAGTGGCATCGAGGGGGGCGGGCGGGCGTCGGCGGTTCCTGAAAGA
GTCCGACCGGAAGGAAGCTGCCGCGGCTGAGGCTGCGGCGGCCGCGGCTA
CTTCGAAGAGGAGGAGTGGCATCGAGGGGGGCGGGCGGGCGTCGGCGGTT
CCTGAAAGAGTCCGACCGGAAGGAAGCTGCCGCGGCTGAGGCTGCGGCGG
CCGCGGCTACTTCGAAGAATCTCCGAAAGACGGAGGCCGAGCTGACGGTC
GCCCTTGCGTCCCTCGACCCGGAGATCCGAGGCAGGCTCTCGGGGCTGGT
CAAGCCCGACGAGCTCGATCCCTTCGAGGTTCGAGCGCTGGGCAAGTTCG
ACGTCGCGGACGCGTTGGACATCCTCGACCGATCTCCGAAAGACGGAGGC
CGAGCTGACGGTCGCCCTTGCGTCCCTCGACCCGGAGATCCGAGGCAGGC
TCTCGGGGCTGGTCAAGCCCGACGAGCTCGATCCCTTCGAGGTTCGAGCG
CTGGGCAAGTTCGACGTCGCGGACGCGTTGGACATCCTCGACCGATTCGC
GGAGGCTGACCTCCGCAAGGTGCGGAACAGGAGCGGTTTCTTGGCCGGGA
TCATGAGAAAGCACGGCTCCGCAGCGACGACGACCAAGACATCTGATGCT
GCCGCTCCTGCGGCGGCGGCGGCGGCAGCAGCAGCATCACCAGGGGCCGC
AGGTAACACGGCGTCCGAGGTGTTGGCAACGTCGGAGGCTCCGCCGACAG
CGACGAAACCAAGCTCGGCCGCAGACGCCGAAGATGAGGAGGAAGAACAA
GGGCCAGGACGAGACGCAGACACAGAGGCGGCAGCAGCAGCAGCAGCAGC
CGAGGAGATTCGCGGAGGCTGACCTCCGCAAGGTGCGGAACAGGAGCGGT
TTCTTGGCCGGGATCATGAGAAAGCACGGCTCCGCAGCGACGACGACCAA
GACATCTGATGCTGCCGCTCCTGCGGCGGCGGCGGCGGCAGCAGCAGCAT
CACCAGGGGCCGCAGGTAACACGGCGTCCGAGGTGTTGGCAACGTCGGAG
GCTCCGCCGACAGCGACGAAACCAAGCTCGGCCGCAGACGCCGAAGATGA
GGAGGAAGAACAAGGGCCAGGACGAGACGCAGACACAGAGGCGGCAGCAG
CAGCAGCAGCAGCCGAGGAG
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