mRNA_H-canaliculatus_F_contig1269.2234.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_F_contig1269.2234.1
Unique Name	mRNA_H-canaliculatus_F_contig1269.2234.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)

Homology

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BLAST of mRNA_H-canaliculatus_F_contig1269.2234.1 vs. uniprot
Match: D7G7M5_ECTSI (Delta protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M5_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.610e-50
Identity = 83/133 (62.41%), Postives = 102/133 (76.69%), Query Frame = 1

Query:  502 SIASSDCDGDNPCMNGGSCAADPAGGYFCSCAQGYAGMTCQTATDGIPLWTIQLDFEGEEFTTSRREVFQRAADRWAEVISHVPGGGAPNWPAGLLVISAALTSIDGAGGILGSAGPTGVWADYPGISYSGSM 900
            + +SS CDG NPC NGGSC+ DPAGGYFCSCA+G+AGM CQ  TDG+P W I+L+FEGE+FT   + +FQR+A RW  VI + PGGG P+ PAG L+IS  + + DG GG+LGSAGPTG W +YP ISYSG M
Sbjct:  359 AASSSSCDGGNPCQNGGSCSTDPAGGYFCSCAEGFAGMVCQINTDGLPPWYIELEFEGEDFTDDLKAIFQRSAARWERVILYTPGGGTPSTPAGRLLISVTIVAKDGKGGVLGSAGPTGTWWEYPSISYSGIM 491

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BLAST of mRNA_H-canaliculatus_F_contig1269.2234.1 vs. uniprot
Match: D8LED3_ECTSI (WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LED3_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.730e-26
Identity = 63/125 (50.40%), Postives = 79/125 (63.20%), Query Frame = 1

Query:  532 NPCMNGGSCAADPAGGYFCSCAQGYAGMTCQTATDGIPLWTIQLDFEGEEFTTSRREVFQRAADRWAEVISHVP--GGGAPNWPAGLLVISAALTSIDGAGGILGSAGPTGVWADYPGISYSGSM 900
            NPCMNGGSC  DP GGY CSC   Y GM C+T   G+  + I +DF G  ++  R+ VFQRAA+RW+E+++H+P  G       AG L I++ L  IDG  G LG AGP G + D  GISYSG M
Sbjct:  404 NPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVTGMSEFFITVDFLGT-WSDERKGVFQRAANRWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEM 527

[Close]

BLAST of mRNA_H-canaliculatus_F_contig1269.2234.1 vs. uniprot
Match: D8LED1_ECTSI (PR1-like metalloprotease n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED1_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.780e-26
Identity = 63/125 (50.40%), Postives = 79/125 (63.20%), Query Frame = 1

Query:  532 NPCMNGGSCAADPAGGYFCSCAQGYAGMTCQTATDGIPLWTIQLDFEGEEFTTSRREVFQRAADRWAEVISHVP--GGGAPNWPAGLLVISAALTSIDGAGGILGSAGPTGVWADYPGISYSGSM 900
            NPCMNGGSC  DP GGY CSC   Y GM C+T   G+  + I +DF G  ++  R+ VFQRAA+RW+E+++H+P  G       AG L I++ L  IDG  G LG AGP G + D  GISYSG M
Sbjct:  417 NPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVTGMSEFFITVDFLGT-WSDERKGVFQRAANRWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEM 540

[Close]

BLAST of mRNA_H-canaliculatus_F_contig1269.2234.1 vs. uniprot
Match: D7G7J6_ECTSI (Putative zinc metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J6_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.860e-26
Identity = 63/125 (50.40%), Postives = 79/125 (63.20%), Query Frame = 1

Query:  532 NPCMNGGSCAADPAGGYFCSCAQGYAGMTCQTATDGIPLWTIQLDFEGEEFTTSRREVFQRAADRWAEVISHVP--GGGAPNWPAGLLVISAALTSIDGAGGILGSAGPTGVWADYPGISYSGSM 900
            NPCMNGGSC  DP GGY CSC   Y GM C+T   G+  + I +DF G  ++  R+ VFQRAA+RW+E+++H+P  G       AG L I++ L  IDG  G LG AGP G + D  GISYSG M
Sbjct:  508 NPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVTGMSEFFITVDFLGT-WSDERKGVFQRAANRWSEILTHIPCSGTNGNGGAAGELTITSTLEPIDGVYGTLGFAGPRGTYNDCRGISYSGEM 631

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig1269.2234.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig1269.2234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7G7M5_ECTSI	1.610e-50	62.41	Delta protein n=1 Tax=Ectocarpus siliculosus TaxID...	[more]
D8LED3_ECTSI	2.730e-26	50.40	WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 R...	[more]
D8LED1_ECTSI	2.780e-26	50.40	PR1-like metalloprotease n=2 Tax=Ectocarpus silicu...	[more]
D7G7J6_ECTSI	2.860e-26	50.40	Putative zinc metalloendopeptidase n=1 Tax=Ectocar...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig1269	contig	H-canaliculatus_F_contig1269:1139..3404 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	122.1
Seed ortholog evalue	4.4e-25
Seed eggNOG ortholog	2880.D8LED4
EggNOG free text desc.	Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs	2E9TD@1,2SG44@2759
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	mitochondrion
Ec32 ortholog description	Epidermal growth factor-like domain
Ec32 ortholog	Ec-22_001800.1
Exons	4
Model size	901
Cds size	900
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig1269.2234.1	prot_H-canaliculatus_F_contig1269.2234.1	Hapterophycus canaliculatus Oshoro5f female	polypeptide	H-canaliculatus_F_contig1269 1139..3404 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928988.025219-CDS-H-canaliculatus_F_contig1269:1138..1268	1622928988.025219-CDS-H-canaliculatus_F_contig1269:1138..1268	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1269 1139..1268 +
1696845639.9974387-CDS-H-canaliculatus_F_contig1269:1138..1268	1696845639.9974387-CDS-H-canaliculatus_F_contig1269:1138..1268	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1269 1139..1268 +
1622928988.0371413-CDS-H-canaliculatus_F_contig1269:1552..2059	1622928988.0371413-CDS-H-canaliculatus_F_contig1269:1552..2059	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1269 1553..2059 +
1696845640.0082726-CDS-H-canaliculatus_F_contig1269:1552..2059	1696845640.0082726-CDS-H-canaliculatus_F_contig1269:1552..2059	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1269 1553..2059 +
1622928988.049515-CDS-H-canaliculatus_F_contig1269:2734..2822	1622928988.049515-CDS-H-canaliculatus_F_contig1269:2734..2822	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1269 2735..2822 +
1696845640.0202465-CDS-H-canaliculatus_F_contig1269:2734..2822	1696845640.0202465-CDS-H-canaliculatus_F_contig1269:2734..2822	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1269 2735..2822 +
1622928988.0634704-CDS-H-canaliculatus_F_contig1269:3229..3404	1622928988.0634704-CDS-H-canaliculatus_F_contig1269:3229..3404	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1269 3230..3404 +
1696845640.0335507-CDS-H-canaliculatus_F_contig1269:3229..3404	1696845640.0335507-CDS-H-canaliculatus_F_contig1269:3229..3404	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1269 3230..3404 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_F_contig1269:1139..3404+
coding sequence from alignment at H-canaliculatus_F_contig1269:1139..3404+

protein sequence of mRNA_H-canaliculatus_F_contig1269.2234.1

>prot_H-canaliculatus_F_contig1269.2234.1 ID=prot_H-canaliculatus_F_contig1269.2234.1|Name=mRNA_H-canaliculatus_F_contig1269.2234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=300bp
RRASRWFRRRCRSTGGMRRTSTPTASRSALPSSLGDGEGCSRASPLSPPT
PAPVSPPTRAPASRPTPAPVSPPTPAPVSPPTPAPISPPTPAPVSQPTPA
PISPPTPTPVSPPTPAPVSPPTPASVSPPTTAPVSPPPPSPVSPPTPAPV
SPPTPAPVSPTPSPTERSIASSDCDGDNPCMNGGSCAADPAGGYFCSCAQ
GYAGMTCQTATDGIPLWTIQLDFEGEEFTTSRREVFQRAADRWAEVISHV
PGGGAPNWPAGLLVISAALTSIDGAGGILGSAGPTGVWADYPGISYSGSM

mRNA from alignment at H-canaliculatus_F_contig1269:1139..3404+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_F_contig1269.2234.1 ID=mRNA_H-canaliculatus_F_contig1269.2234.1|Name=mRNA_H-canaliculatus_F_contig1269.2234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2266bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1269:1139..3404+ (Hapterophycus canaliculatus Oshoro5f female)
CGCCGTGCGAGCAGATGGTTTCGTCGAAGATGCCGCAGCACAGGAGGGAT
GAGGAGGACCTCAACCCCCACGGCGAGCCGCTCAGCGCTACCGTCGTCGC
TCGGCGACGGAGAAGGATGCAGTCGCGCTTGTATTGCGGCCCCGCGTCCT
CACCATACACAACCGCGCCGACCACCGTCACGCCGGCACCGACCGTTGGA
CATTCGCAGCCTACCCCATCGCCCGTGTCAAAGCCGCAGACAGGAGCCCC
TGTTCCCGCCCCGACGATTGCCCCCGTTCCGGCCCCAACGAAGACCCCCG
TTTCCCCACGGACTCCGACCCCTGTGTTGCCCAAGACTCCGGCACCCGTG
TCGCCGGAAACTATGACCCCTATTTCTCCCCCAACTCCCGCCCCCATTTC
GCCCCCGACCCCAGCTCCCCTTTCTCCCCCAACGCCTGCCCCGGTTTCTC
CTCCGACTCGGGCCCCCGCGTCTCGTCCGACGCCGGCCCCCGTTTCTCCT
CCGACCCCGGCACCCGTTTCACCACCGACCCCGGCCCCAATTTCACCGCC
GACCCCGGCCCCCGTTTCTCAACCCACCCCGGCCCCAATTTCACCGCCGA
CGCCGACCCCAGTTTCACCGCCGACGCCGGCCCCAGTTTCACCACCAACG
CCGGCCTCCGTGTCTCCCCCGACAACGGCCCCGGTGTCTCCCCCTCCGCC
GTCCCCCGTGTCTCCCCCAACGCCAGCCCCCGTGTCTCCCCCGACACCGG
CCCCCGTCTCCCCAACACCCTCCCCGACGGAACGTTCGATCGCGTCTTCT
GACTGCGATGGCGATAACCCGTGCATGAACGGAGGCTCGTGTGCGGCGGA
TCCCGCCGGTGGCTACTTCTGCTCCTGCGCCCAAGGTTACGCGGGGATGA
CCTGCCAGACCGCAACAGACGGTGAGGGGATCGCGTTCCTCGCATGGTTA
GGTCGAGGGGGAGGGGGTGATCACGAGCGGTGTCCATGTTTGAGGTGTCG
TATGTAGCTGGTGGGGCTGTTTCAGGAACAGCTCCTGCCCGCGAGGCGTG
CAGCTCGGGGGCGAGCGGCTCGAAACATTCGAGCCCCGTGCCGTCCCGTT
GACTGCCCCTTGGTATGGTGCTGCCTTATCGCCGTTAAAACGGGATTTTA
CGAACTGATGAAGGGCAAGGACACCGGGGACGAAAAATTGGCGTCCTCCC
TCACCCGGCTGGGCATGGTGGCTTCGCATCCCCGCAGAGGGTAGACTTTC
GACAAGGTCTCACCAATCCCTACCCGCTTGCTCTGATTTCGCCTGGATGC
AGCTTGGTGCCATGTGACCGACAAAGTACCGTCCCCGGCGAAAGAAGCAT
CCGCGCGACGATTCACGCTTAGTATTGTGCAAAGGATAGGTCAATGTCGG
ACGATTCTACGGATCTTCGTGCGTAAAAGGGGCGATGTTTTCCTTGTTCT
AGAGCAAGAAGCCCCTCTCTCTCCGCCCTGCTCAAGGAAATTCACCCCTC
AAAAATTCTCGAACACTCTCCCCCACCCCTCCCTCTCCACCTCCCATTCC
CTCGCCATGAACGCTCCTGCCATAAACATGTCGAACGTCAAACAAGGCAT
TCCCCTGTGGACAATTCAGCTGGATTTCGAAGGAGAGGAGTTCACCACGT
CCCGTCGGGAGGTTTTCCAGCGCGCAGCAGACAGGTGCACCACTCGTAGA
TGGCGAGGCATTGCACCACGAAGTGGAGTTGCTGTCATCGGTGTTGTCTG
TGCCGTTGGTGCCGCCTTGTCCTTCTTGCTTGTCCCGCATTCGTCCCCAT
GGCTGCATGGCATTCTGTCCAGCTGATCGGCGGTCCACGAAACGATGCCG
GTTGTCTTGGATGGCGGTCCTGTCGTGAATAAGCGAGAAACGGTTACACG
TGCGCGGTATGGCTACTTGCCACATGGGACTCCTCTCAAAGCACGAGAGG
CTGGTGCCATTTCCTGCTGTAACTGATCAAGCAACTAGTCACCCGCTCTT
TCCTTCTAATGAACCCGCTTCGCTACGAACCGCTCATATAGTCAAAGAAC
CGAAAACCTTTTCGGGTCCATGTTTGTTGTAATTTACCCAGGTGGGCCGA
GGTAATTTCTCATGTCCCAGGCGGTGGGGCCCCTAACTGGCCAGCCGGAT
TGCTGGTGATCTCGGCAGCCCTCACCTCCATCGACGGGGCGGGGGGCATC
TTGGGCTCCGCCGGGCCCACTGGTGTGTGGGCGGATTACCCGGGCATCAG
CTACAGCGGATCTATG

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1269:1139..3404+

>mRNA_H-canaliculatus_F_contig1269.2234.1 ID=mRNA_H-canaliculatus_F_contig1269.2234.1|Name=mRNA_H-canaliculatus_F_contig1269.2234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1800bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1269:1139..3404+ (Hapterophycus canaliculatus Oshoro5f female)
CGCCGTGCGAGCAGATGGTTTCGTCGAAGATGCCGCAGCACAGGAGGGAT
GAGGAGGACCTCAACCCCCACGGCGAGCCGCTCAGCGCTACCGTCGTCGC
TCGGCGACGGAGAAGGATGCAGTCGCGCTTCGCCGTGCGAGCAGATGGTT
TCGTCGAAGATGCCGCAGCACAGGAGGGATGAGGAGGACCTCAACCCCCA
CGGCGAGCCGCTCAGCGCTACCGTCGTCGCTCGGCGACGGAGAAGGATGC
AGTCGCGCTTCTCCCCTTTCTCCCCCAACGCCTGCCCCGGTTTCTCCTCC
GACTCGGGCCCCCGCGTCTCGTCCGACGCCGGCCCCCGTTTCTCCTCCGA
CCCCGGCACCCGTTTCACCACCGACCCCGGCCCCAATTTCACCGCCGACC
CCGGCCCCCGTTTCTCAACCCACCCCGGCCCCAATTTCACCGCCGACGCC
GACCCCAGTTTCACCGCCGACGCCGGCCCCAGTTTCACCACCAACGCCGG
CCTCCGTGTCTCCCCCGACAACGGCCCCGGTGTCTCCCCCTCCGCCGTCC
CCCGTGTCTCCCCCAACGCCAGCCCCCGTGTCTCCCCCGACACCGGCCCC
CGTCTCCCCAACACCCTCCCCGACGGAACGTTCGATCGCGTCTTCTGACT
GCGATGGCGATAACCCGTGCATGAACGGAGGCTCGTGTGCGGCGGATCCC
GCCGGTGGCTACTTCTGCTCCTGCGCCCAAGGTTACGCGGGGATGACCTG
CCAGACCGCAACAGACGCTCCCCTTTCTCCCCCAACGCCTGCCCCGGTTT
CTCCTCCGACTCGGGCCCCCGCGTCTCGTCCGACGCCGGCCCCCGTTTCT
CCTCCGACCCCGGCACCCGTTTCACCACCGACCCCGGCCCCAATTTCACC
GCCGACCCCGGCCCCCGTTTCTCAACCCACCCCGGCCCCAATTTCACCGC
CGACGCCGACCCCAGTTTCACCGCCGACGCCGGCCCCAGTTTCACCACCA
ACGCCGGCCTCCGTGTCTCCCCCGACAACGGCCCCGGTGTCTCCCCCTCC
GCCGTCCCCCGTGTCTCCCCCAACGCCAGCCCCCGTGTCTCCCCCGACAC
CGGCCCCCGTCTCCCCAACACCCTCCCCGACGGAACGTTCGATCGCGTCT
TCTGACTGCGATGGCGATAACCCGTGCATGAACGGAGGCTCGTGTGCGGC
GGATCCCGCCGGTGGCTACTTCTGCTCCTGCGCCCAAGGTTACGCGGGGA
TGACCTGCCAGACCGCAACAGACGGCATTCCCCTGTGGACAATTCAGCTG
GATTTCGAAGGAGAGGAGTTCACCACGTCCCGTCGGGAGGTTTTCCAGCG
CGCAGCAGACAGGCATTCCCCTGTGGACAATTCAGCTGGATTTCGAAGGA
GAGGAGTTCACCACGTCCCGTCGGGAGGTTTTCCAGCGCGCAGCAGACAG
GTGGGCCGAGGTAATTTCTCATGTCCCAGGCGGTGGGGCCCCTAACTGGC
CAGCCGGATTGCTGGTGATCTCGGCAGCCCTCACCTCCATCGACGGGGCG
GGGGGCATCTTGGGCTCCGCCGGGCCCACTGGTGTGTGGGCGGATTACCC
GGGCATCAGCTACAGCGGATCTATGGTGGGCCGAGGTAATTTCTCATGTC
CCAGGCGGTGGGGCCCCTAACTGGCCAGCCGGATTGCTGGTGATCTCGGC
AGCCCTCACCTCCATCGACGGGGCGGGGGGCATCTTGGGCTCCGCCGGGC
CCACTGGTGTGTGGGCGGATTACCCGGGCATCAGCTACAGCGGATCTATG