mRNA_H-canaliculatus_F_contig12638.2209.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12638.2209.1
Unique NamemRNA_H-canaliculatus_F_contig12638.2209.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: D8LEJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ2_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 3.230e-45
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 1
Query:   94 EPKKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQV 342
            EP KLAAVVYTYVDGM DKR P+R+ HLDLLK MTEEG CLLGGAFLEPCDGAVLLFSSP++AQQFVDKDPYNTGGLVTKYQ+
Sbjct:   89 EPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQI 171          
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A835ZJU7_9STRA (YCII domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJU7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.340e-23
Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  103 KLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQV 342
            +L  + YTYV+GM +KR PHR AHL +L  +T++G+C+LGGAF+ P DGA+LLF +   A+ F  +DPY+  GL+TK+ +
Sbjct:    2 QLYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNI 81          
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A7S3JUF8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUF8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.910e-22
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   88 AAEPKKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSP----DEAQQFVDKDPYNTGGLVTKYQVSQ 348
            ++ P K  A+ YTYVDGM +KR P+R AHLD LK M + GKC+LGGAF +PCDGAV+LF S     +E + F + DPY    LV  + VS+
Sbjct:   48 SSSPVKFYALRYTYVDGMLEKRQPYRQAHLDGLKKMADLGKCVLGGAFNDPCDGAVVLFDSSTTTKEEIEAFANVDPYVVNNLVPSWSVSE 138          
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: UPI00196B6146 (YciI family protein n=1 Tax=Conexibacter sp. SYSU D00693 TaxID=2812560 RepID=UPI00196B6146)

HSP 1 Score: 77.4 bits (189), Expect = 2.380e-16
Identity = 33/81 (40.74%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  100 KKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQV 342
            ++LAA+ YTYV+ + ++R PHR AHL +L+ + + G+ ++ G   +P  GA+++F SP+ AQ FV +DPY   G+VT +++
Sbjct:    2 ERLAALHYTYVEDVLERREPHREAHLAILRELKDAGELVMAGPVGDPPAGALIVFRSPEAAQAFVARDPYVEAGIVTSHRI 82          
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: L8HGR4_ACACA (YCIIrelated domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGR4_ACACA)

HSP 1 Score: 79.7 bits (195), Expect = 2.440e-16
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 WGKVRCRGFNAGSPTPTLAFRPCGSPPPAAAEPKKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFS-SPDEAQQFVDKDPYNTGGLVTKYQV 342
            WG +  RG  AG+   + A    G+P  AA    KL A++YTYVDG+ +KRAPHR+AHL  +K   ++G+ + GGA+ +   G ++L + + D+  +F   DPY   GLVT+++V
Sbjct:   46 WGIIATRG-PAGARVFSTASGATGTPA-AAPTVDKLHALMYTYVDGILEKRAPHRAAHLAYVKQYEDDGRLVAGGAWEDASGGLIVLRTDTADDVHRFAHDDPYVKAGLVTRHEV 158          
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: UPI000833C2E6 (YciI-like protein n=1 Tax=Sulfurospirillum sp. UCH001 TaxID=1581011 RepID=UPI000833C2E6)

HSP 1 Score: 76.6 bits (187), Expect = 5.310e-16
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  121 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQ--QFVDKDPYNTGGLVTKYQVSQ 348
            Y YVD + +KR P R AHL L  +  E G+ LLGGAF  P DGA+L+F   ++AQ   FV +DPY   GLVT + + +
Sbjct:    7 YNYVDNIIEKRVPFREAHLALATSFVESGELLLGGAFANPADGAILIFKVENKAQVEAFVKQDPYVQNGLVTSWNIRE 84          
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A0G4ERK1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERK1_VITBC)

HSP 1 Score: 72.4 bits (176), Expect = 6.490e-14
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  121 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFS--SPDEAQQFVDKDPYNTGGLVTKYQV 342
            Y+YV  + +KR PHRS HL LLKT  +  + LLGGAF  P DGA+L+F   S +  ++FV +DPY    LVT + +
Sbjct:   28 YSYVADVLEKRQPHRSGHLQLLKTFFQPDELLLGGAFANPPDGAMLVFRNVSKERIERFVSQDPYVRNDLVTHWDI 103          
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A315X5V4_9CHLR (YCII domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A315X5V4_9CHLR)

HSP 1 Score: 70.5 bits (171), Expect = 1.250e-13
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  121 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQVSQ 348
            Y YV  +  +R P R AHLDL +  + + K  L GA+ +P DGAV +F+S + A++FV +DPY   GLVT +++ +
Sbjct:    7 YDYVADVLTRRDPFRPAHLDLARGFSADRKLKLAGAYTDPIDGAVFVFTSREAAEEFVSRDPYVANGLVTGHRIRE 82          
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: UPI001604AB2C (uncharacterized protein LOC110853477 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604AB2C)

HSP 1 Score: 71.2 bits (173), Expect = 1.870e-13
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  121 YTY-VDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLF-SSPDEAQQFVDKDPYNTGGLVTKYQVSQ 348
            YTY  + + ++RAPHR  HL L K  T  GK +LGGAF++P DGA L+F  S ++ ++F+ +DPY   G+ T + V +
Sbjct:   44 YTYNPENLVERRAPHRPGHLALAKEFTTGGKLILGGAFVDPIDGAALVFRGSEEDVKEFIRRDPYVQKGIATGHNVRE 121          
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A2D0N840_9BACT (YCII domain-containing protein n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0N840_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 3.740e-13
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  121 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDE--AQQFVDKDPYNTGGLVTKYQV 342
            Y  VD   +KRAP+RSAHLDL+K   +    ++ GA  EP DGAVL+F   D   A+ F   DPY   GL+T++ V
Sbjct:    7 YKTVDNFIEKRAPYRSAHLDLVKEAQKNEFLIMAGALAEPADGAVLVFRGEDASVAEDFARNDPYVQNGLITEWSV 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ2_ECTSI3.230e-4586.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZJU7_9STRA3.340e-2350.00YCII domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3JUF8_9STRA1.910e-2251.65Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
UPI00196B61462.380e-1640.74YciI family protein n=1 Tax=Conexibacter sp. SYSU ... [more]
L8HGR4_ACACA2.440e-1640.00YCIIrelated domain containing protein n=1 Tax=Acan... [more]
UPI000833C2E65.310e-1647.44YciI-like protein n=1 Tax=Sulfurospirillum sp. UCH... [more]
A0A0G4ERK1_VITBC6.490e-1447.37Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A315X5V4_9CHLR1.250e-1342.11YCII domain-containing protein n=1 Tax=Dehalococco... [more]
UPI001604AB2C1.870e-1343.59uncharacterized protein LOC110853477 n=1 Tax=Folso... [more]
A0A2D0N840_9BACT3.740e-1346.05YCII domain-containing protein n=1 Tax=Flavilitori... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12638contigH-canaliculatus_F_contig12638:204..970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue5.3e-35
Seed eggNOG ortholog2880.D8LEJ2
EggNOG free text desc.YCII-related domain
EggNOG OGs2DZF9@1,2S6ZJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-21_004450.1
Exons2
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.2616146-CDS-H-canaliculatus_F_contig12638:203..4231622928984.2616146-CDS-H-canaliculatus_F_contig12638:203..423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12638 204..423 +
1696845638.3389187-CDS-H-canaliculatus_F_contig12638:203..4231696845638.3389187-CDS-H-canaliculatus_F_contig12638:203..423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12638 204..423 +
1622928984.2774818-CDS-H-canaliculatus_F_contig12638:842..9701622928984.2774818-CDS-H-canaliculatus_F_contig12638:842..970Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12638 843..970 +
1696845638.3505218-CDS-H-canaliculatus_F_contig12638:842..9701696845638.3505218-CDS-H-canaliculatus_F_contig12638:842..970Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12638 843..970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12638.2209.1prot_H-canaliculatus_F_contig12638.2209.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12638 204..970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12638.2209.1

>prot_H-canaliculatus_F_contig12638.2209.1 ID=prot_H-canaliculatus_F_contig12638.2209.1|Name=mRNA_H-canaliculatus_F_contig12638.2209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
WGKVRCRGFNAGSPTPTLAFRPCGSPPPAAAEPKKLAAVVYTYVDGMEDK
RAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQQFVDK
DPYNTGGLVTKYQVSQ
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mRNA from alignment at H-canaliculatus_F_contig12638:204..970+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12638.2209.1 ID=mRNA_H-canaliculatus_F_contig12638.2209.1|Name=mRNA_H-canaliculatus_F_contig12638.2209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=767bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12638:204..970+ (Hapterophycus canaliculatus Oshoro5f female)
TGGGGAAAAGTTCGGTGCCGCGGTTTTAACGCCGGGTCTCCCACGCCCAC GCTTGCGTTCCGTCCTTGTGGATCACCCCCCCCCGCCGCAGCGGAGCCCA AGAAACTGGCGGCGGTTGTGTACACGTACGTTGACGGCATGGAGGACAAG CGCGCCCCTCATAGATCGGCTCATCTCGATTTGCTCAAGACCATGACCGA AGAAGGGAAGTGTCTGCTCGGTGAGATTCAGAGGATCATAGTTGAAATTG CACCCTCGCACACGAAGCAGTATGCTGCTGCGGTTGGATAAATACGGTGG TCCCTGTCACTAAGGGTCGTCGGGTGTATCTATCTCTTTCTTTATAGGCG AGATGGACGAGGCGCGGTTTATACTGATACGGCTGTATGCTTAAGCAGCC GTGGTTGCAGTATGGACACCCCACCTGTGGAAACGAACCCAATTAGTTGT GCTTCGGTCGAAGCATCAACAAACCCGCTACGTACACCTAAAACCGCGGC CGGCACTGCGCAGAAGGACGCACGCCGGTCCTTGGCTAAGACCTACACCT CCCCTTCAATTGACATGCTGACCATCGAAGTGCTGCGTAAACGTTCCGGC GCTTGACTCGTGGTCATAATCTCTCGTTCTCATGCTCAGGAGGGGCATTC CTGGAACCCTGCGACGGAGCGGTCCTCCTGTTCTCGAGCCCAGACGAAGC CCAACAGTTTGTGGACAAAGACCCGTACAACACTGGCGGGCTCGTCACGA AGTACCAGGTGAGCCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12638:204..970+

>mRNA_H-canaliculatus_F_contig12638.2209.1 ID=mRNA_H-canaliculatus_F_contig12638.2209.1|Name=mRNA_H-canaliculatus_F_contig12638.2209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12638:204..970+ (Hapterophycus canaliculatus Oshoro5f female)
TGGGGAAAAGTTCGGTGCCGCGGTTTTAACGCCGGGTCTCCCACGCCCAC
GCTTGCGTTCCGTCCTTGTGGATCACCCCCCCCCGCCGCAGCGGAGCCCA
AGAAACTGGCGGCGGTTGTGTACACGTACGTTGACGGCATGGAGGACAAG
CGCGCCCCTCATAGATCGGCTCATCTCGATTTGCTCAAGACCATGACCGA
AGAAGGGAAGTGTCTGCTCGTGGGGAAAAGTTCGGTGCCGCGGTTTTAAC
GCCGGGTCTCCCACGCCCACGCTTGCGTTCCGTCCTTGTGGATCACCCCC
CCCCGCCGCAGCGGAGCCCAAGAAACTGGCGGCGGTTGTGTACACGTACG
TTGACGGCATGGAGGACAAGCGCGCCCCTCATAGATCGGCTCATCTCGAT
TTGCTCAAGACCATGACCGAAGAAGGGAAGTGTCTGCTCGGAGGGGCATT
CCTGGAACCCTGCGACGGAGCGGTCCTCCTGTTCTCGAGCCCAGACGAAG
CCCAACAGTTTGTGGACAAAGACCCGTACAACACTGGCGGGCTCGTCACG
AAGTACCAGGTGAGCCAAGAGGGGCATTCCTGGAACCCTGCGACGGAGCG
GTCCTCCTGTTCTCGAGCCCAGACGAAGCCCAACAGTTTGTGGACAAAGA
CCCGTACAACACTGGCGGGCTCGTCACGAAGTACCAGGTGAGCCAA
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