mRNA_H-canaliculatus_F_contig12638.2209.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: D8LEJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ2_ECTSI) HSP 1 Score: 153 bits (387), Expect = 3.230e-45 Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 1
Query: 94 EPKKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQV 342
EP KLAAVVYTYVDGM DKR P+R+ HLDLLK MTEEG CLLGGAFLEPCDGAVLLFSSP++AQQFVDKDPYNTGGLVTKYQ+
Sbjct: 89 EPAKLAAVVYTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQI 171
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A835ZJU7_9STRA (YCII domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJU7_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 3.340e-23 Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 103 KLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQV 342
+L + YTYV+GM +KR PHR AHL +L +T++G+C+LGGAF+ P DGA+LLF + A+ F +DPY+ GL+TK+ +
Sbjct: 2 QLYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNI 81
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A7S3JUF8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUF8_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.910e-22 Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1
Query: 88 AAEPKKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSP----DEAQQFVDKDPYNTGGLVTKYQVSQ 348
++ P K A+ YTYVDGM +KR P+R AHLD LK M + GKC+LGGAF +PCDGAV+LF S +E + F + DPY LV + VS+
Sbjct: 48 SSSPVKFYALRYTYVDGMLEKRQPYRQAHLDGLKKMADLGKCVLGGAFNDPCDGAVVLFDSSTTTKEEIEAFANVDPYVVNNLVPSWSVSE 138
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: UPI00196B6146 (YciI family protein n=1 Tax=Conexibacter sp. SYSU D00693 TaxID=2812560 RepID=UPI00196B6146) HSP 1 Score: 77.4 bits (189), Expect = 2.380e-16 Identity = 33/81 (40.74%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 100 KKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQV 342
++LAA+ YTYV+ + ++R PHR AHL +L+ + + G+ ++ G +P GA+++F SP+ AQ FV +DPY G+VT +++
Sbjct: 2 ERLAALHYTYVEDVLERREPHREAHLAILRELKDAGELVMAGPVGDPPAGALIVFRSPEAAQAFVARDPYVEAGIVTSHRI 82
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: L8HGR4_ACACA (YCIIrelated domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HGR4_ACACA) HSP 1 Score: 79.7 bits (195), Expect = 2.440e-16 Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1 WGKVRCRGFNAGSPTPTLAFRPCGSPPPAAAEPKKLAAVVYTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFS-SPDEAQQFVDKDPYNTGGLVTKYQV 342
WG + RG AG+ + A G+P AA KL A++YTYVDG+ +KRAPHR+AHL +K ++G+ + GGA+ + G ++L + + D+ +F DPY GLVT+++V
Sbjct: 46 WGIIATRG-PAGARVFSTASGATGTPA-AAPTVDKLHALMYTYVDGILEKRAPHRAAHLAYVKQYEDDGRLVAGGAWEDASGGLIVLRTDTADDVHRFAHDDPYVKAGLVTRHEV 158
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: UPI000833C2E6 (YciI-like protein n=1 Tax=Sulfurospirillum sp. UCH001 TaxID=1581011 RepID=UPI000833C2E6) HSP 1 Score: 76.6 bits (187), Expect = 5.310e-16 Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 121 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQ--QFVDKDPYNTGGLVTKYQVSQ 348
Y YVD + +KR P R AHL L + E G+ LLGGAF P DGA+L+F ++AQ FV +DPY GLVT + + +
Sbjct: 7 YNYVDNIIEKRVPFREAHLALATSFVESGELLLGGAFANPADGAILIFKVENKAQVEAFVKQDPYVQNGLVTSWNIRE 84
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A0G4ERK1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERK1_VITBC) HSP 1 Score: 72.4 bits (176), Expect = 6.490e-14 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 121 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFS--SPDEAQQFVDKDPYNTGGLVTKYQV 342
Y+YV + +KR PHRS HL LLKT + + LLGGAF P DGA+L+F S + ++FV +DPY LVT + +
Sbjct: 28 YSYVADVLEKRQPHRSGHLQLLKTFFQPDELLLGGAFANPPDGAMLVFRNVSKERIERFVSQDPYVRNDLVTHWDI 103
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A315X5V4_9CHLR (YCII domain-containing protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A315X5V4_9CHLR) HSP 1 Score: 70.5 bits (171), Expect = 1.250e-13 Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 121 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDEAQQFVDKDPYNTGGLVTKYQVSQ 348
Y YV + +R P R AHLDL + + + K L GA+ +P DGAV +F+S + A++FV +DPY GLVT +++ +
Sbjct: 7 YDYVADVLTRRDPFRPAHLDLARGFSADRKLKLAGAYTDPIDGAVFVFTSREAAEEFVSRDPYVANGLVTGHRIRE 82
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: UPI001604AB2C (uncharacterized protein LOC110853477 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604AB2C) HSP 1 Score: 71.2 bits (173), Expect = 1.870e-13 Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 121 YTY-VDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLF-SSPDEAQQFVDKDPYNTGGLVTKYQVSQ 348
YTY + + ++RAPHR HL L K T GK +LGGAF++P DGA L+F S ++ ++F+ +DPY G+ T + V +
Sbjct: 44 YTYNPENLVERRAPHRPGHLALAKEFTTGGKLILGGAFVDPIDGAALVFRGSEEDVKEFIRRDPYVQKGIATGHNVRE 121
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Match: A0A2D0N840_9BACT (YCII domain-containing protein n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0N840_9BACT) HSP 1 Score: 69.3 bits (168), Expect = 3.740e-13 Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 121 YTYVDGMEDKRAPHRSAHLDLLKTMTEEGKCLLGGAFLEPCDGAVLLFSSPDE--AQQFVDKDPYNTGGLVTKYQV 342
Y VD +KRAP+RSAHLDL+K + ++ GA EP DGAVL+F D A+ F DPY GL+T++ V
Sbjct: 7 YKTVDNFIEKRAPYRSAHLDLVKEAQKNEFLIMAGALAEPADGAVLVFRGEDASVAEDFARNDPYVQNGLITEWSV 82 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12638.2209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12638.2209.1 >prot_H-canaliculatus_F_contig12638.2209.1 ID=prot_H-canaliculatus_F_contig12638.2209.1|Name=mRNA_H-canaliculatus_F_contig12638.2209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp WGKVRCRGFNAGSPTPTLAFRPCGSPPPAAAEPKKLAAVVYTYVDGMEDKback to top mRNA from alignment at H-canaliculatus_F_contig12638:204..970+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12638.2209.1 ID=mRNA_H-canaliculatus_F_contig12638.2209.1|Name=mRNA_H-canaliculatus_F_contig12638.2209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=767bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12638:204..970+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12638:204..970+ >mRNA_H-canaliculatus_F_contig12638.2209.1 ID=mRNA_H-canaliculatus_F_contig12638.2209.1|Name=mRNA_H-canaliculatus_F_contig12638.2209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12638:204..970+ (Hapterophycus canaliculatus Oshoro5f female)back to top |