mRNA_H-canaliculatus_F_contig12582.2167.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12582.2167.1
Unique NamemRNA_H-canaliculatus_F_contig12582.2167.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12582.2167.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.140e-32
Identity = 75/120 (62.50%), Postives = 81/120 (67.50%), Query Frame = 1 
Query:   40 EMSARERREWRRTQAAERARELRTRGRKLSPVSRPLGADRDGKVYVLFRGDPEAVYVGALPRSALAGPRGGASRDR-----------------DGGEGEEDAEAAGGNWSVFRGGAIEEL 348
            EM+ARERREWRR QAAERARELR R RKLSPVSRPLG DRDGKVY+LFRGDP AVY GALP  A A  R G  + R                  GGEGEE+ +   G WSVFRG A+EEL
Sbjct: 1938 EMTARERREWRRAQAAERARELRARSRKLSPVSRPLGMDRDGKVYLLFRGDPGAVYAGALPEGAAAALRRGRGKGRVGRPPAYATAAAGPGSKGGGEGEEEGKEGAGGWSVFRGEAVEEL 2057
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BLAST of mRNA_H-canaliculatus_F_contig12582.2167.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.710e-29
Identity = 75/121 (61.98%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:   40 EMSARERREWRRTQAAERARELRTRGRKLSPVSRPLGADRDGKVYVLFRGDPEAVYVGALPRSALAGPRGGASRDRDG------------------GEGEEDAEAAGGNWSVFRGGAIEEL 348
            EM+ARERREWRR QAAERARELR RGRKLSPVSRPLG DRDGKVY+LFRGDP AVY GALP  A+A  R G  + R G                         EAAGG WSVFRG A+EEL
Sbjct: 2513 EMTARERREWRRAQAAERARELRARGRKLSPVSRPLGMDRDGKVYLLFRGDPGAVYAGALPEGAVAALRRGRGKGRVGRPPAYATAAXXXXXXXXXXXXXXXXEAAGG-WSVFRGEAVEEL 2632
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12582.2167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8B2_9PHAE2.140e-3262.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K5_ECTSI3.710e-2961.98Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12582contigH-canaliculatus_F_contig12582:2722..3071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928973.8068254-CDS-H-canaliculatus_F_contig12582:2721..30691622928973.8068254-CDS-H-canaliculatus_F_contig12582:2721..3069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12582 2722..3069 +
1696845635.76975-CDS-H-canaliculatus_F_contig12582:2721..30691696845635.76975-CDS-H-canaliculatus_F_contig12582:2721..3069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12582 2722..3069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12582.2167.1prot_H-canaliculatus_F_contig12582.2167.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12582 2722..3069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12582.2167.1

>prot_H-canaliculatus_F_contig12582.2167.1 ID=prot_H-canaliculatus_F_contig12582.2167.1|Name=mRNA_H-canaliculatus_F_contig12582.2167.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
KEAVTGGGGGGGGEMSARERREWRRTQAAERARELRTRGRKLSPVSRPLG
ADRDGKVYVLFRGDPEAVYVGALPRSALAGPRGGASRDRDGGEGEEDAEA
AGGNWSVFRGGAIEEL
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mRNA from alignment at H-canaliculatus_F_contig12582:2722..3071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12582.2167.1 ID=mRNA_H-canaliculatus_F_contig12582.2167.1|Name=mRNA_H-canaliculatus_F_contig12582.2167.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12582:2722..3071+ (Hapterophycus canaliculatus Oshoro5f female)
AAAGAGGCCGTCACCGGAGGCGGCGGCGGCGGCGGCGGCGAGATGAGCGC
ACGCGAGCGAAGAGAGTGGCGCCGCACGCAGGCGGCCGAGAGGGCGCGGG
AGCTACGCACGAGGGGCAGGAAGCTCTCGCCGGTCAGCCGGCCCCTCGGC
GCAGACCGCGACGGCAAGGTGTACGTGTTGTTCCGCGGGGACCCGGAGGC
CGTGTACGTCGGAGCCCTTCCCCGGAGCGCGCTCGCGGGGCCCCGCGGCG
GGGCGTCCAGAGATAGGGACGGCGGCGAGGGTGAGGAGGACGCGGAGGCC
GCGGGAGGGAACTGGTCGGTTTTCCGTGGAGGGGCTATCGAGGAACTGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12582:2722..3071+

>mRNA_H-canaliculatus_F_contig12582.2167.1 ID=mRNA_H-canaliculatus_F_contig12582.2167.1|Name=mRNA_H-canaliculatus_F_contig12582.2167.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12582:2722..3071+ (Hapterophycus canaliculatus Oshoro5f female)
AAAGAGGCCGTCACCGGAGGCGGCGGCGGCGGCGGCGGCGAGATGAGCGC
ACGCGAGCGAAGAGAGTGGCGCCGCACGCAGGCGGCCGAGAGGGCGCGGG
AGCTACGCACGAGGGGCAGGAAGCTCTCGCCGGTCAGCCGGCCCCTCGGC
GCAGACCGCGACGGCAAGGTGTACGTGTTGTTCCGCGGGGACCCGGAGGC
CGTGTACGTCGGAGCCCTTCCCCGGAGCGCGCTCGCGGGGCCCCGCGGCG
GGGCGTCCAGAGATAGGGACGGCGGCGAGGGTGAGGAGGACGCGGAGGCC
GCGGGAGGGAACTGGTCGGTTTTCCGTGGAGGGGCTATCGAGGAACTGAA
AGAGGCCGTCACCGGAGGCGGCGGCGGCGGCGGCGGCGAGATGAGCGCAC
GCGAGCGAAGAGAGTGGCGCCGCACGCAGGCGGCCGAGAGGGCGCGGGAG
CTACGCACGAGGGGCAGGAAGCTCTCGCCGGTCAGCCGGCCCCTCGGCGC
AGACCGCGACGGCAAGGTGTACGTGTTGTTCCGCGGGGACCCGGAGGCCG
TGTACGTCGGAGCCCTTCCCCGGAGCGCGCTCGCGGGGCCCCGCGGCGGG
GCGTCCAGAGATAGGGACGGCGGCGAGGGTGAGGAGGACGCGGAGGCCGC
GGGAGGGAACTGGTCGGTTTTCCGTGGAGGGGCTATCGAGGAACTG
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