mRNA_H-canaliculatus_F_contig12479.2094.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12479.2094.1
Unique NamemRNA_H-canaliculatus_F_contig12479.2094.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: A0A6H5L6N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N5_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 8.520e-107
Identity = 175/239 (73.22%), Postives = 194/239 (81.17%), Query Frame = 1
Query:    1 KTLATSDLRYSLEAVGVRASSMFERSELIDAAMEKGIAKLADGSIVLDESQAGRPSPPPPSGGRGVVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQ-------GALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVIKPEDVEYTTAKPLNEQNNGRDDDLLDDFDMRLNNSVE 696
            K+L+T+DLR +LEAVGVRA SMFERSELID AM  GIAKL +G+IVL E +  R S     GGRGVVIPEPL E  +PFSVAA WKK AAGVL AVNLGGALYLQ LLSGPAF GVTLPGYYGFVQ       GALPFLLTYAVALN IPA+R+V+NKRENAKI+ RNFLRRKWA+AGRSG + + RKL+AAK MTTDMKVIKPEDVEYTTAK L +Q   +DDDLLDDFD RL +S E
Sbjct:   78 KSLSTADLRVALEAVGVRAMSMFERSELIDEAMAAGIAKLDNGNIVL-EPRTSRGSSSSSGGGRGVVIPEPLMEETKPFSVAAGWKKFAAGVLGAVNLGGALYLQQLLSGPAFAGVTLPGYYGFVQASLLLLLGALPFLLTYAVALNVIPAVRFVLNKRENAKIEGRNFLRRKWAEAGRSGDAVISRKLKAAKTMTTDMKVIKPEDVEYTTAKTLADQGINQDDDLLDDFDARLRSSKE 315          
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: D8LHB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB2_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 1.630e-106
Identity = 175/233 (75.11%), Postives = 196/233 (84.12%), Query Frame = 1
Query:    1 KTLATSDLRYSLEAVGVRASSMFERSELIDAAMEKGIAKLADGSIVLDESQAGRPSPPPPSGGRGVVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVIKPEDVEYTTAKPLNEQNNGRDDDLLDDFDMRLNNSVEK 699
            K+L+T+DLR +LEAVGVRA SMFERSELIDAAM  GIAKL +G+IVL E +  R S     GGRGVVIPEPL E  +PFSVAA WKK AAGVL AVNLGGALYL+ LLSGPAF GVTLPGYYGFVQGALPFLLTYAVALN IPA+R+V+NKRENAKI+ RNFLRRKWA+AGRSG + V RKL+AAK MTTDMKVIKPEDVEYTTAK L +Q   +DDDLLDDFD RL +S ++
Sbjct:  319 KSLSTADLRVALEAVGVRAMSMFERSELIDAAMAAGIAKLDNGNIVL-EPRTSRGSSSSSGGGRGVVIPEPLMEETKPFSVAAGWKKFAAGVLGAVNLGGALYLRQLLSGPAFAGVTLPGYYGFVQGALPFLLTYAVALNVIPAVRFVLNKRENAKIEGRNFLRRKWAEAGRSGGAVVSRKLKAAKTMTTDMKVIKPEDVEYTTAKTLADQGINQDDDLLDDFDARLKSSKKE 550          
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: A0A7S2JVL0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVL0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.630e-36
Identity = 91/224 (40.62%), Postives = 122/224 (54.46%), Query Frame = 1
Query:   10 ATSDLRYSLEAVGVRASSMFERSELIDAAMEKGIAKLADGSIVLDESQAGRPSPPPPSGGRGVVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVIKPEDVEYTTAKPLNEQNNGRDDDLLDDFDMRL 681
            +T D+   LE+ GV+     E+S+LID       A   D SIV                          EE E  FSVA   +K  AG L A+NLGGALYL N+LS PA  GVTLPGYYG VQ A P LL YA+  N IPA R+    ++N +I++RN  RR+W  A R+    + RKL+AAK + T ++ +  EDV Y T + +++++  R+ D L DFD  L
Sbjct:  369 STRDIINFLESQGVQTRGALEKSDLIDVLGSLEDAVGGDISIV--------------------------EEQEYKFSVAGDTQKFFAGALGAINLGGALYLGNMLSSPALAGVTLPGYYGLVQSAFPLLLGYAILYNIIPAARFAWIGKQNEEIRQRNQSRRQWLTAIRASRGRIARKLKAAKGLGTKLRRVDTEDVIYDTKESISDEDMRRETDALRDFDKLL 566          
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: A0A836C8Z4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z4_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.860e-34
Identity = 77/162 (47.53%), Postives = 100/162 (61.73%), Query Frame = 1
Query:  196 VVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVIKPEDVEYTTAKPLNEQNNGRDDDLLDDFDMRL 681
            V +P  L+E   PFSVA+   K AA  L AVNLGGALYL++LL      GV   GY   VQGA+P LL YAVA N IP +RW+ NK +NA+I++RN  R  W+    +     +RK+ AA+K++T++KV+   D+ YTTAK L EQ         DDFD RL
Sbjct:  402 VDVPPTLQEEPIPFSVASPGNKFAAAALGAVNLGGALYLRSLLGSAVAAGVQFGGYAAAVQGAMPLLLGYAVAFNVIPLVRWLRNKAKNAEIEQRNDARMAWSRLIAAATPNNKRKMMAARKLSTELKVLGQGDIAYTTAKDLAEQQQELAGSAFDDFDRRL 563          
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: A0A7R9ZEQ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZEQ9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.260e-34
Identity = 79/170 (46.47%), Postives = 105/170 (61.76%), Query Frame = 1
Query:  181 SGGRGVVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVI--KPEDVEYTTAKPLNEQNNGRDDDLLDDFDMRLN 684
            S G G    +P++E E  F+ +     V +GVL A+NLGGALYL  +LS PA  GV LP Y+G VQ   P LL YA++ NAIPA+R++ NK  NA I+ERN +RRKWA   +S    V+RKLRAA+ + TDMK +  K + V  T    +++    R+ D L DFD  LN
Sbjct:  223 SDGGGRDSSQPIQEEELTFNRSGTGWNVLSGVLGAINLGGALYLGQILSSPALYGVQLPSYFGLVQACYPLLLLYALSFNAIPAVRYLSNKSANAAIRERNAVRRKWAVVLKSMGKRVRRKLRAARTLRTDMKRVGGKTDIVYDTKTDDVSKVTKKRESDALRDFDELLN 392          
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: A0A7S2EHB7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EHB7_TRICV)

HSP 1 Score: 125 bits (314), Expect = 5.210e-32
Identity = 88/232 (37.93%), Postives = 115/232 (49.57%), Query Frame = 1
Query:   10 ATSDLRYSLEAVGVRASSMFERSELIDAAMEKGIAKLADGSIVLDESQAGRPSPPPPSGGRGVVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVIKP--EDVEYTTAKP-LNEQNNGRDDDLLDDFDMRLNNSVE 696
            +T D+   L   GV      ER +LI+         L D S+ +                 G    EP++E E  F+ +     + +G L A+NLGGALYL  +LS PA VGV LP YYG VQ A P LL YAV  N IP +R   N R N  I++RN  RRKW+   R+    VQRKL+AA+ M T ++ +    +DV Y T K    E    R+ D L +FD  LN   E
Sbjct:    6 STGDIVQVLNYRGVSTKGALERRDLIN---------LLDKSLTVS----------------GRDPSEPIQEEELEFNRSGTGWNILSGALGAINLGGALYLGQILSSPALVGVRLPSYYGVVQSAFPLLLAYAVLFNVIPLVRNAYNGRVNEGIRQRNDARRKWSTVLRAAGRNVQRKLKAARVMRTGLRRVGTGGDDVVYDTKKDSAKELEKRREKDALKEFDRLLNQDDE 212          
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: A0A7S1ZEU5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZEU5_TRICV)

HSP 1 Score: 125 bits (314), Expect = 1.540e-30
Identity = 88/232 (37.93%), Postives = 115/232 (49.57%), Query Frame = 1
Query:   10 ATSDLRYSLEAVGVRASSMFERSELIDAAMEKGIAKLADGSIVLDESQAGRPSPPPPSGGRGVVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVIKP--EDVEYTTAKP-LNEQNNGRDDDLLDDFDMRLNNSVE 696
            +T D+   L   GV      ER +LI+         L D S+ +                 G    EP++E E  F+ +     + +G L A+NLGGALYL  +LS PA VGV LP YYG VQ A P LL YAV  N IP +R   N R N  I++RN  RRKW+   R+    VQRKL+AA+ M T ++ +    +DV Y T K    E    R+ D L +FD  LN   E
Sbjct:  161 STGDIVQVLNYRGVSTKGALERRDLIN---------LLDKSLTVS----------------GRDPSEPIQEEELEFNRSGTGWNILSGALGAINLGGALYLGQILSSPALVGVRLPSYYGVVQSAFPLLLAYAVLFNVIPLVRNAYNGRVNEGIRQRNDARRKWSTVLRAAGRNVQRKLKAARVMRTGLRRVGTGGDDVVYDTKKDSAKELEKRREKDALKEFDRLLNQDDE 367          
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: A0A1Z5KBK3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBK3_FISSO)

HSP 1 Score: 122 bits (306), Expect = 2.310e-28
Identity = 80/186 (43.01%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  172 PPPSGGRGVVIPEP--------LEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVI--KPEDVEYTTAKPLNEQNNGRDDDLLDDFDMRLNNSVEK 699
            PPPS     ++ +         L E    FSVA    K  AG L  VNLGGALYL NLL   A  GV LP Y G VQ   P LL YAV  N IP +R V N++ENAKI++RN +RRKW DA ++  ++  RKL+AA KM T +K +   P+++ + T KP+ E    + D  L +FD  L     K
Sbjct:  430 PPPSDSEKALLEDAAADSQTDVLTERRLKFSVATDVNKFLAGGLGVVNLGGALYLGNLLGQYALYGVRLPSYMGVVQSFYPLLLLYAVLFNVIPLVRNVYNQQENAKIEKRNGVRRKWRDALKN--NSFTRKLKAAAKMGTRLKQLGANPDEIVFDTRKPIEEIKKRKIDLELKEFDKLLQEDESK 613          
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: L1IB44_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IB44_GUITC)

HSP 1 Score: 120 bits (302), Expect = 6.080e-28
Identity = 79/207 (38.16%), Postives = 112/207 (54.11%), Query Frame = 1
Query:   19 DLRYSLEAVGVRASSMFERSELIDAAMEKGIAK--LADGSIVLDESQAGRPSPPPPSGGRGVVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVIKPEDVEYTTAKPLNEQ 633
            DL+ S  A   +        EL   A  +GI+   + +   +L   +A R +    S   G  +   L+E    FS+A   +++A G L AVNL GALYL NL + P  VG  L G  GFV+   P LL Y VA  A+PA R++  + +N KI++RN LR  WA A R G   ++RKL  A+K +  +K+IK +D+EYTT K + EQ
Sbjct:  332 DLQLSAAAANDQGWEKLSLQELTKLAKSEGISTRGVYEKDDLLAVIRAARETRSVKSNQEGDRVATYLDEKPFQFSLATSGQQLAVGALAAVNLFGALYLGNLFASPYLVGRELIGLLGFVKAIYPLLLAYGVAFVAVPAARYLKLQADNRKIEKRNRLRALWAFALRKGGRNLERKLTEARKRSQGVKLIKEQDIEYTTGKSIEEQ 538          
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Match: A0A7S4HX01_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HX01_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.300e-26
Identity = 88/215 (40.93%), Postives = 116/215 (53.95%), Query Frame = 1
Query:   46 GVRASSMFERSELIDAAMEKGIAKLADGSIVLDESQAGRPSPPPPSGGRGVVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGGALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVNKRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVIKP-EDVEYTT-AKPLNEQNNGRDDDLLDDFDMRLN 684
            GV A    E+ +LI         KL D S+    S +GR     PS        EP++E E  F+ +     V +GVL AVNLGGALYL  +L+ PA  GV LP Y+G VQ   P LL YA+A N IPAIR+   K +NA I+ERN L+R W+   RS    V+RKL AA+ M + MK +   +D+ + T     ++    R+ D L DFD  LN
Sbjct:  409 GVNARGALEKKDLI---------KLLDQSL----SMSGRD----PS--------EPIQEEEFDFNRSGTGWNVLSGVLGAVNLGGALYLGQILASPALNGVRLPSYFGVVQSIYPLLLIYALAFNIIPAIRYFNIKGKNAAIRERNALKRNWSVVLRSMGKRVRRKLDAAQNMRSKMKRLGAGKDIVFDTRVDDASKVTKKRESDALRDFDKLLN 598          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12479.2094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L6N5_9PHAE8.520e-10773.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHB2_ECTSI1.630e-10675.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2JVL0_9STRA7.630e-3640.63Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A836C8Z4_9STRA1.860e-3447.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9ZEQ9_9STRA4.260e-3446.47Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2EHB7_TRICV5.210e-3237.93Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1ZEU5_TRICV1.540e-3037.93Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5KBK3_FISSO2.310e-2843.01Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
L1IB44_GUITC6.080e-2838.16Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S4HX01_9STRA1.300e-2640.93Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12479contigH-canaliculatus_F_contig12479:137..3218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.0
Seed ortholog evalue7.1e-87
Seed eggNOG ortholog2880.D8LHB2
KEGG koko:K22072
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0316@1,KOG1119@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons4
Model size702
Cds size702
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12479.2094.1prot_H-canaliculatus_F_contig12479.2094.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12479 137..3218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.5931659-CDS-H-canaliculatus_F_contig12479:136..3551622928962.5931659-CDS-H-canaliculatus_F_contig12479:136..355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12479 137..355 +
1696845631.4496372-CDS-H-canaliculatus_F_contig12479:136..3551696845631.4496372-CDS-H-canaliculatus_F_contig12479:136..355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12479 137..355 +
1622928962.624318-CDS-H-canaliculatus_F_contig12479:1225..13841622928962.624318-CDS-H-canaliculatus_F_contig12479:1225..1384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12479 1226..1384 +
1696845631.4600668-CDS-H-canaliculatus_F_contig12479:1225..13841696845631.4600668-CDS-H-canaliculatus_F_contig12479:1225..1384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12479 1226..1384 +
1622928962.6359324-CDS-H-canaliculatus_F_contig12479:2192..23921622928962.6359324-CDS-H-canaliculatus_F_contig12479:2192..2392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12479 2193..2392 +
1696845631.4688535-CDS-H-canaliculatus_F_contig12479:2192..23921696845631.4688535-CDS-H-canaliculatus_F_contig12479:2192..2392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12479 2193..2392 +
1622928962.6493769-CDS-H-canaliculatus_F_contig12479:3094..32181622928962.6493769-CDS-H-canaliculatus_F_contig12479:3094..3218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12479 3095..3218 +
1696845631.4810302-CDS-H-canaliculatus_F_contig12479:3094..32181696845631.4810302-CDS-H-canaliculatus_F_contig12479:3094..3218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12479 3095..3218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12479.2094.1

>prot_H-canaliculatus_F_contig12479.2094.1 ID=prot_H-canaliculatus_F_contig12479.2094.1|Name=mRNA_H-canaliculatus_F_contig12479.2094.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=234bp
KTLATSDLRYSLEAVGVRASSMFERSELIDAAMEKGIAKLADGSIVLDES
QAGRPSPPPPSGGRGVVIPEPLEEAERPFSVAAQWKKVAAGVLCAVNLGG
ALYLQNLLSGPAFVGVTLPGYYGFVQGALPFLLTYAVALNAIPAIRWVVN
KRENAKIQERNFLRRKWADAGRSGASAVQRKLRAAKKMTTDMKVIKPEDV
EYTTAKPLNEQNNGRDDDLLDDFDMRLNNSVEK*
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mRNA from alignment at H-canaliculatus_F_contig12479:137..3218+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12479.2094.1 ID=mRNA_H-canaliculatus_F_contig12479.2094.1|Name=mRNA_H-canaliculatus_F_contig12479.2094.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3082bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12479:137..3218+ (Hapterophycus canaliculatus Oshoro5f female)
AAGACCCTCGCCACGTCCGACCTGCGGTATTCCTTGGAGGCGGTGGGAGT CCGGGCCTCGTCCATGTTCGAGCGCTCCGAGCTGATCGACGCTGCCATGG AGAAGGGCATCGCGAAGCTCGCAGACGGCAGCATCGTGCTGGACGAGAGT CAAGCGGGCCGGCCATCCCCGCCGCCGCCTTCTGGCGGTCGGGGGGTTGT GATTCCCGAGCCTCTGGAGGTGCGCTCTCGCCGCTTTTGCCGCTTTGTTC GCCGCTGTGTCCGTTGTTTTTGTGAAAATTGTCGGTGGCATCTGAGGAGG GCGGGAATTTGCTCGGTGTTGTGCTCGTTGGTGGCGGCGTCAACGCGCTG TGTTGCGGGCGTCATCGCCGTGTCAGTATCGGTTTTCTGTTACAGGTACG AGCCTCGTGTAACAGCCTCGTCGACGTTTCCGGTGTCAGGGAAGCGTCCT CCTGCTGCTGTGCCGCAGGCATGTCGCGCTTCTCACCTCGGCCTCGAGAT GACAAACGCCGTTCCCTCTTGTTTTAAAATTATTTTTTTGCTCCGGGGAT AGAGGACAGTTCGCCTTCCGTTGTTGAAGGAAGAAAATTGGGGGTAGCCA CAACACTAGTGAGTCCCAGACATAGCTCTCCGATCGATCGATCTCCAAAC GGTGGAACGTCGCTCTGCTGTACGCACGATGCACGATACACCTTTTGTGT TCGCTTCTGCGCTAGAGACCAAACGGGTACAGCGCCAAAAGAGGGAAAGA GCTCTTGTTGTTCCAACCGGAAAACCGGAAGAGGTGTGGAAAACCGAAGA AGTGTGAGCGTTGACGAAAGCTTGGCTGGCGTCCTTTTTAGATCGGTCCA TGCTTGGTTAATTCCGAATTCCATCTCCTCCGTTTCTTTTTGTGTCCGCG AAGCCCGCGGCCGGCTCAGCGCGACAGATTGCCGTACGAGCCCCCCCCCC CCCACATGAAGTTGTTTTTGCGAGCACTGCTAGCTCCTGAAGACCGGCAA GATTCCAGGCGGTGGCTACAACCGGACGTTTTAAATCGTCTTTTTGCCTT TGTTGTTATTCTTGTTGTTGTTGTTGTTCTTGTTCTCAGGAAGCGGAGCG GCCGTTCAGCGTTGCCGCGCAGTGGAAGAAGGTGGCGGCGGGCGTTCTCT GCGCGGTGAACCTCGGGGGCGCGCTCTACCTCCAGAACCTGCTCTCAGGC CCTGCCTTCGTCGGCGTCACTCTCCCTGGGTACTACGGCTTCGTACAGGT ACAGCGGTACAGCATTATCGTTTTTTCTTGGTTTTCTTGGTTTTCTTGTT TTCCCTTTTTTTTCCTTTTTCTTTTTCTCCCCGGTTTGGATGGACTTTTT TGGGCGAATAGTCTACACACCGAGTCGAGCATTGCCACATCGATGTCTTG AATCCTTTTTTTTCGTTCGAGCTCGATTTTGTTTCCGCGGAAGGTGGCGA TCTTTTGGTCTCTTGTTTATATTTTTCGATGTGTTTTTCGCGGAAAGGAC CGATCGTATCGTCTCAGCAGAGCAACTGACGCGCAATTCCACCGCCTCTG GCGAGAGGCAGCAGGGATGAAGAAAGCCTATCTGTTGCTGCATGAAATTG CGGAAGTTCCAAAAACTTTTTTCGGTTCACGCTTGTGTCCCAAGCTCAAT CATCAATGAACTCTCACTGTTGTTTGGAACTCAACAGAAGCCTCGAGCTC CGCCTCGCGCGACGTGCCTCAGGTGGCGTTCCAACGGTGTTGTTGTGTCT CCCTCCAAAAAGGAGCGGTTGCTGTTTATTTGTACCCCACGGCCGAACAG GCGTTCCCTAGGCGGTTTTGGTCCGATGGAAACCCCACTACGCTTCTCGG CATGCATGGTGCCGCACACTACCCAGCTTCCGAAATTTGATCGTGCATGC CACTCTCCTGCTCGCGCGAGGCACGTCGCTCGCCCCACCCCTCTCCGAAG GGAGCGATGAACACCAGCTGACCGTCCCCGCCCCCCTGGTCAAGGCTTCG CGCTTGCCTAATGGAAACCCATTTTTGTCTGGTTAACGTTCACCCCCCCT GCGCAGGGAGCGCTTCCTTTCTTGCTCACCTACGCGGTCGCGCTGAACGC GATCCCGGCGATTCGCTGGGTGGTGAACAAGCGAGAGAACGCTAAGATCC AGGAGCGAAATTTCCTGCGGCGGAAGTGGGCGGACGCGGGGAGGAGCGGC GCGTCCGCGGTGCAGCGAAAGCTCCGGGCGGCGAAGAAGATGACCACCGA CATGAAGTGAGGCAGGCGTCCAGAGACATGAGAGAGCTTTTCGGTGATGG TCGTCGTTCCTTGTTGCTGCCCTGCCACTGCTGTTGGACACGGAAGAGAG GCGTCGAGAGGGACGGGCGAATGCCGCAATGTCGCAATAGGGATGGCATC CACTATCTAGTCTATGGGTGTACGTCGGAGACGTGCACGGCGCTGCGGTG TGTGTTAACTGTGCGCACTTTTCATGAAGGAAAACGCCCTAGGAACACCT CCTGAGGTACACGTCGTGCGATGCTTATTTGTCGGAGAATGCGATTCGTT TCTGTGCCGGGCTGCCTCGAAAACCATGTGAGCTTCCAACCGGTATCGTA CGCGCTCTGAAGGGCTATCGTGAAATCAACGAAGAAGAAACACCTTCTGA GACAGAGCTCAGCGGGCGTCTCAGGAGGCCTGTGTCGGATTCCATGCAGT GAAGGTTGGGTCAGTTTACCAGACGGAATGAAGACATCAACATCAGCAAA AGGCTGTGAGACTCTTTAGGGTGAAAAAAGTACGGATCGTGCGGAGATGG GAGTCTTTTTTTTCGAAATTCGAAGGGACCACATTATGCCACCACCTCCA GGGTGTGGCGGCACCTATAGAGATAAGAGCAGACAGCGACGACAAAATTT TGGAACTAGCGATCACGCTAAGCTGACCGCGAGCCTCTCGTCACGACCAA ACCCCCAGGGTGATCAAGCCGGAGGACGTGGAATACACCACGGCCAAACC CCTCAACGAGCAAAACAACGGCCGAGACGACGATCTGCTCGACGACTTCG ACATGCGCCTCAACAACTCCGTCGAGAAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12479:137..3218+

>mRNA_H-canaliculatus_F_contig12479.2094.1 ID=mRNA_H-canaliculatus_F_contig12479.2094.1|Name=mRNA_H-canaliculatus_F_contig12479.2094.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1404bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12479:137..3218+ (Hapterophycus canaliculatus Oshoro5f female)
AAGACCCTCGCCACGTCCGACCTGCGGTATTCCTTGGAGGCGGTGGGAGT
CCGGGCCTCGTCCATGTTCGAGCGCTCCGAGCTGATCGACGCTGCCATGG
AGAAGGGCATCGCGAAGCTCGCAGACGGCAGCATCGTGCTGGACGAGAGT
CAAGCGGGCCGGCCATCCCCGCCGCCGCCTTCTGGCGGTCGGGGGGTTGT
GATTCCCGAGCCTCTGGAGAAGACCCTCGCCACGTCCGACCTGCGGTATT
CCTTGGAGGCGGTGGGAGTCCGGGCCTCGTCCATGTTCGAGCGCTCCGAG
CTGATCGACGCTGCCATGGAGAAGGGCATCGCGAAGCTCGCAGACGGCAG
CATCGTGCTGGACGAGAGTCAAGCGGGCCGGCCATCCCCGCCGCCGCCTT
CTGGCGGTCGGGGGGTTGTGATTCCCGAGCCTCTGGAGGAAGCGGAGCGG
CCGTTCAGCGTTGCCGCGCAGTGGAAGAAGGTGGCGGCGGGCGTTCTCTG
CGCGGTGAACCTCGGGGGCGCGCTCTACCTCCAGAACCTGCTCTCAGGCC
CTGCCTTCGTCGGCGTCACTCTCCCTGGGTACTACGGCTTCGTACAGGAA
GCGGAGCGGCCGTTCAGCGTTGCCGCGCAGTGGAAGAAGGTGGCGGCGGG
CGTTCTCTGCGCGGTGAACCTCGGGGGCGCGCTCTACCTCCAGAACCTGC
TCTCAGGCCCTGCCTTCGTCGGCGTCACTCTCCCTGGGTACTACGGCTTC
GTACAGGGAGCGCTTCCTTTCTTGCTCACCTACGCGGTCGCGCTGAACGC
GATCCCGGCGATTCGCTGGGTGGTGAACAAGCGAGAGAACGCTAAGATCC
AGGAGCGAAATTTCCTGCGGCGGAAGTGGGCGGACGCGGGGAGGAGCGGC
GCGTCCGCGGTGCAGCGAAAGCTCCGGGCGGCGAAGAAGATGACCACCGA
CATGAAGGAGCGCTTCCTTTCTTGCTCACCTACGCGGTCGCGCTGAACGC
GATCCCGGCGATTCGCTGGGTGGTGAACAAGCGAGAGAACGCTAAGATCC
AGGAGCGAAATTTCCTGCGGCGGAAGTGGGCGGACGCGGGGAGGAGCGGC
GCGTCCGCGGTGCAGCGAAAGCTCCGGGCGGCGAAGAAGATGACCACCGA
CATGAAGGTGATCAAGCCGGAGGACGTGGAATACACCACGGCCAAACCCC
TCAACGAGCAAAACAACGGCCGAGACGACGATCTGCTCGACGACTTCGAC
ATGCGCCTCAACAACTCCGTCGAGAAGTGAGGTGATCAAGCCGGAGGACG
TGGAATACACCACGGCCAAACCCCTCAACGAGCAAAACAACGGCCGAGAC
GACGATCTGCTCGACGACTTCGACATGCGCCTCAACAACTCCGTCGAGAA
GTGA
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