mRNA_H-canaliculatus_F_contig12451.2082.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12451.2082.1
Unique NamemRNA_H-canaliculatus_F_contig12451.2082.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: D7FJU8_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU8_ECTSI)

HSP 1 Score: 471 bits (1213), Expect = 1.780e-153
Identity = 225/288 (78.12%), Postives = 257/288 (89.24%), Query Frame = 1
Query:    7 QLKVMSLNSSEDKRGDLAKNRRRAPKWAQYYFRLRDNSLTKSPPRRSSFPGNSATESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGVHDDYMGEGRRGRFFYRMVEGSVPQWILTHPMSKAPRTGEGLFPGEVIEVTQVLSSEGSTFLRLANDRGWTYARSPTDGGVLFEDLAGGVSEDTEEYSFPSGASGMVPILYGPGLRTQATGATIRPGEHARAAERFTPVDNTKVVFVKLADERGWIPVRTDVRGPPTVLHGW 870
            +LKVM+LN+SEDKR    K  RRAP W QYYFRL++ +LTKSPPRRSSFPGN+  ++E+M+LTS TITSYTNTKNCFCVR+ ++SWFLLARSLDDMKRWM AINLRARH+FQREHGVHDDYMG+GRRGRFFYRMVEGSVPQWILTHPM+KAPRTG+GLFPGEV+EVTQVLSSE  TFLRLANDRGWT+ARSP DG VLFEDLAGGV+EDTEEY+FP GASGMVPIL+GPGLRTQATG  +RPGE  RA+ERFTP+DN+ VVFVKL D RGW+P+++   GP T+L GW
Sbjct: 1059 ELKVMNLNTSEDKR---EKPTRRAPTWNQYYFRLKEETLTKSPPRRSSFPGNANQQAEDMKLTSATITSYTNTKNCFCVRTDDVSWFLLARSLDDMKRWMTAINLRARHIFQREHGVHDDYMGQGRRGRFFYRMVEGSVPQWILTHPMTKAPRTGDGLFPGEVVEVTQVLSSEDVTFLRLANDRGWTFARSPADGSVLFEDLAGGVAEDTEEYTFPPGASGMVPILHGPGLRTQATGVMVRPGERVRASERFTPLDNSSVVFVKLQDGRGWMPLKSQHGGPSTILQGW 1343          
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: A0A6H5LIB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIB2_9PHAE)

HSP 1 Score: 464 bits (1195), Expect = 1.550e-146
Identity = 223/288 (77.43%), Postives = 256/288 (88.89%), Query Frame = 1
Query:    7 QLKVMSLNSSEDKRGDLAKNRRRAPKWAQYYFRLRDNSLTKSPPRRSSFPGNSATESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGVHDDYMGEGRRGRFFYRMVEGSVPQWILTHPMSKAPRTGEGLFPGEVIEVTQVLSSEGSTFLRLANDRGWTYARSPTDGGVLFEDLAGGVSEDTEEYSFPSGASGMVPILYGPGLRTQATGATIRPGEHARAAERFTPVDNTKVVFVKLADERGWIPVRTDVRGPPTVLHGW 870
            +LKVM+LN+SEDKR    K  RRAPKW QY+FRLR+ +LTKS PRR S PGN+  +SE+M+LTS TITSYTNTKNCFCVR+  +SWFLLARSLDDMKRWM+AINLRARH+FQREHGVHDDY G+GRRGRFFYRMVEGSVPQWILTHPM+KAPRTG+GLFPGEV+EVTQVLSSE  TFLRLANDRGWT+ARSP DG VLFEDLAGGV+EDTEEY+FP GASGMVPIL+GPGL+TQATG  +RPGE  RA+ERFTP+DN+KVVFVKL D RGW+P++++  GP T+L GW
Sbjct: 2314 ELKVMNLNTSEDKR---EKPTRRAPKWNQYFFRLREETLTKSLPRRPSSPGNADQQSEDMKLTSATITSYTNTKNCFCVRTDEVSWFLLARSLDDMKRWMSAINLRARHIFQREHGVHDDYAGQGRRGRFFYRMVEGSVPQWILTHPMTKAPRTGDGLFPGEVVEVTQVLSSEDVTFLRLANDRGWTFARSPADGSVLFEDLAGGVAEDTEEYTFPPGASGMVPILHGPGLKTQATGVFVRPGERVRASERFTPLDNSKVVFVKLQDGRGWMPLKSEHGGPSTILQGW 2598          
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: D7FPQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 5.140e-78
Identity = 134/262 (51.15%), Postives = 175/262 (66.79%), Query Frame = 1
Query:   49 GDLAKNRRRAPKWAQYYFRLRDNSLTKSPPRRSSFPGNSATESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGV-HDDYMGEGRRGRFFYRMVEGSVPQWILTHPMSKAPRTGEGLFPGEVIEVTQVLSSEGSTFLRLANDRGWTYARSPTDGGVLFEDLAGGVSEDTEEYSFPSGASGMVPILYGPGLRTQATGATIRPGEHARAAERFTPVDNTKVVFVKLADERGWIPVR 831
            G L K  +   +W   YFRL D  LT     + S  G +  +++ M LT+++ITSYTNTKNCFCVR+G   WFLL +    + +WM AIN +   LF + + V  D+Y  +G  GRFFYRMV+ ++PQWI T+P   APRTG+GLFPGEVIEV Q L+++ + FLR+ NDRGWTYA++P DG  LFE++ G V  DT  Y FP  A   +P+L+GPGL +Q TG  + PGE A A ERFTP D + VVF+KL D RGW+PVR
Sbjct: 1153 GHLMKQSKYFSRWKPRYFRLEDGYLTYYD--KKSLVGTN--KNKGMELTAHSITSYTNTKNCFCVRTGEAVWFLLGKDELALNKWMTAINAQIHGLFIKLYNVPEDNYWSQGTNGRFFYRMVDDALPQWIRTYPEQAAPRTGDGLFPGEVIEVAQTLTNKETEFLRIGNDRGWTYAKNPADGSTLFEEIDGEVVPDTRNYGFPPSAKDPIPLLFGPGLESQQTGEALIPGERAEAMERFTPGDGSGVVFIKLKDGRGWVPVR 1410          
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: D8LMS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS5_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 7.250e-62
Identity = 116/260 (44.62%), Postives = 156/260 (60.00%), Query Frame = 1
Query:   85 WAQYYFRLRDNSLTKSPPRRSSFPGNSATESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGV-HDDYMGEGRRGRFFYRMVEGSVPQWILTHPMSKAPRTGEGLFPGEVIEVTQVLSSEGSTFLRLANDRGWTYARSPTDGGVLFEDLAGGVSEDTEEYSFPSGASGMVPILYGPGLRTQATGATIRPGEHARAAERFTPVDNTKVVFVKLADERGWIPVRTDVRGPPTVL 861
            W   YFRL D+ LT    +  S  G    +++ M L   +  SYTN  NCF VR+G  +W LLA+  D M++W+ AIN     LF + H V  D+Y  +G +G+FFYRMV    PQWI + P  +APRTGEGLFPGEV+E+ QVLS+    +LR+ANDRGWT A +P DG VLFE+  G  +ED  +Y     +   VPIL+GP + +Q TG  + PG+ A A  RF P D   + F+KLA ++GW+P+       P  L
Sbjct: 1210 WKSRYFRLEDDILTFYDTK--SLVG--TRKNKRMELQPDSTASYTNVPNCFSVRTGEENWILLAKDEDSMEKWITAINAVIHGLFIKRHNVPEDNYDSQGLKGQFFYRMVPNVQPQWIRSFPEEEAPRTGEGLFPGEVVEIVQVLSNNNKVYLRIANDRGWTVAANPEDGSVLFEESNGDFTEDPMDYCT---SKNEVPILFGPSMESQMTGDALAPGQIAEATGRFVPADEGGLAFIKLAGDKGWVPMNPSFGVVPAGL 1462          
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 7.520e-58
Identity = 113/263 (42.97%), Postives = 155/263 (58.94%), Query Frame = 1
Query:   49 GDLAKNRRRAPKWAQYYFRLRDNSLTKSPPRRSSFPGNSATESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGVH-DDYMGEGRRGRFFYRMVEGSVPQWILTHPMSKAPRTGEGLFPGEVIEVTQVLS-SEGSTFLRLANDRGWTYARSPTDGGVLFEDLAGGVSEDTEEYSFPSGASGMVPILYGPGLRTQATGATIRPGEHARAAERFTPVD-NTKVVFVKLADERGWIPV 828
            G L K +R   +W  YYF+L D  LT     + S  G    + + + L  ++ T++TNTK CFCVR+G  +WFL+A+  D M +WM AIN +   LF +      D+Y G+G +GRFFY M E    QWI THP   APRTGEG+FP EV+EV Q+L   E   +LRLA++RGWT  R   DG    E +AG + EDT  Y  P        +L GP   ++ TG  + PG+  +A E+FTP   ++ VVF+KLA+ RGW+P+
Sbjct: 1206 GHLMKQKRFTARWQTYYFKLDDGFLTHYD--KKSLVG--TRKRKTLELKPHSTTAFTNTKCCFCVRTGQNAWFLIAQDHDQMTQWMTAINAQVYSLFLKNFTPPADNYWGQGTKGRFFYGMPENGASQWIYTHPEEGAPRTGEGVFPMEVVEVVQLLPVGEDHLWLRLADERGWTCGRHSKDGEPCLEQVAGDIVEDTRVYELPRNQEQGTHVLCGPATASEVTGEVLDPGDRVQAVEKFTPAGADSGVVFIKLAEGRGWVPL 1464          
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: D8LMW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 3.120e-50
Identity = 112/269 (41.64%), Postives = 152/269 (56.51%), Query Frame = 1
Query:   43 KRGDLAKNRRRAPKWAQYYFRLRDNSLTKSPPRRSSFPGNSATESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGVH-DDYMGEGRRGRFFYRMVEGSVPQWILTHPMSKAPRTGEGLFPGEVIEVTQVLSSEGSTFLRLANDRGWTYARS--PTDGGVLFEDLAGGVSEDTEEYSFPSGASGMVPILYGPGLRTQATGATIRPGEHARAAERFTPVDNTKV----VFVKLADERGWIPV 828
            K G L    +   +W   YF L DN    S   + S  G    ++ E++  S  +T  TN  N F VR+G   W LLARS  +MK WM AI  +   LF RE+ V  DDY  +G  G+ FY+M  G  PQWI T P+ +AP TG+GLF GE+IEVTQVL +EG  FLR+ANDRGW  A+     DG  LF  ++G ++ +T E++ P  A+    +L+GP L +Q TGAT+ PG+  R  +R+T     +      FVKL    GW+P+
Sbjct: 1128 KEGYLMSQSKMMKRWTPRYFVL-DNGFL-SHYEKISLVGTKKHKTMELKADS--VTRPTNQINTFGVRTGTTEWLLLARSKKEMKAWMGAITDQIHALFIREYNVPGDDYQSQGTWGQCFYKMAAGVRPQWIRTFPVPQAPHTGDGLFEGEIIEVTQVLENEGVKFLRMANDRGWASAQDIEAGDGTALFTKVSGELTTETREHNVPMIANQPAVVLFGPSLESQETGATLMPGDSVRVVQRYTSAPGVEKRDGQAFVKLKKTGGWVPI 1392          
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: A0A6H5JKN0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN0_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.320e-50
Identity = 112/269 (41.64%), Postives = 151/269 (56.13%), Query Frame = 1
Query:   43 KRGDLAKNRRRAPKWAQYYFRLRDNSLTKSPPRRSSFPGNSATESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGVH-DDYMGEGRRGRFFYRMVEGSVPQWILTHPMSKAPRTGEGLFPGEVIEVTQVLSSEGSTFLRLANDRGWTYARS--PTDGGVLFEDLAGGVSEDTEEYSFPSGASGMVPILYGPGLRTQATGATIRPGEHARAAERFTPVDNTKV----VFVKLADERGWIPV 828
            K G L    +   +W   YF L DN    S     S  G    ++ E++  S  +T   N  N F VR+G   W LLARS ++MK WM AI  +   LF RE+ V  DDY  +G  G+ FY+MV G  PQWI T P+ +AP TG+GLF GE IEVTQVL +EG +FLR+ANDRGW  A+     DG  LF  ++G ++ +T E+  P  A+    +L+GP L +Q  GAT+ PG+  R  +R+TP    +      FVKL    GW+P+
Sbjct:  504 KEGYLMSQSKMMKRWTPRYFVL-DNGFL-SHYENISLVGTKKHKTMELKADS--VTRPANQINTFGVRTGTTEWLLLARSKNEMKAWMGAIKDQIHALFIREYNVPGDDYQSQGAWGQCFYKMVAGVRPQWIRTFPVPQAPHTGDGLFEGETIEVTQVLENEGVSFLRMANDRGWASAQDIEAGDGTALFTKVSGELTTETREHIVPMIANQPAVVLFGPSLESQEMGATLMPGDIVRVVQRYTPAPGVEKRDGQTFVKLKKTGGWVPI 768          
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: D8LHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.730e-42
Identity = 88/187 (47.06%), Postives = 116/187 (62.03%), Query Frame = 1
Query:   49 GDLAKNRRRAPKWAQYYFRLRDNSLTKSPPRRSSFPGNSATESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGV-HDDYMGEGRRGRFFYRMVEGSVPQWILTHPMSKAPRTGEGLFPGEVIEVTQVLSSE--GSTFLRLANDRGWTYARSPTDGGVL 600
            G L K  + + +W   +FRL D  LT     + S  G   T ++EM LT ++  S+  TKNCFCVR+ + +WFL+AR L  M  WM AIN     LF + + V  D+Y  +G +GRFFYRM  G+ PQWILT+P   APRTG+GLF G+VI+V QVL+ +  G  FLR+A+DRGW   R P D  VL
Sbjct: 1161 GYLMKQSKHSSRWKSQFFRLDDGFLTCYD--KKSLVG--TTPNKEMELTGHSTASFATTKNCFCVRTEDAAWFLMARDLGSMNEWMTAINAEIHRLFVKLYDVPEDNYWSQGLQGRFFYRMAAGARPQWILTYPEQAAPRTGDGLFEGDVIDVVQVLTHKETGKVFLRIADDRGWAQRRDPVDNTVL 1343          
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: A0A836C8E2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 9.600e-41
Identity = 98/269 (36.43%), Postives = 137/269 (50.93%), Query Frame = 1
Query:  190 LTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGV--------------------HDDYM-GEGRRGRF-FYRMVEGSVPQWILTHPMSKAPRTGEGLFPGEVIEVTQVLSSE-GSTFLRLANDRGWTYARSPTD------------------GG-----------VLFEDLAGGVSEDTEEYSFPSGASGMVPILYGPGLRTQATGATIRPGEHARAAERFTPVDNTKVVFVKLADERGWIPVRTDV 840
            +TS ++TS TN K+CFCV++G+  WFLLA+   +  +WM A+N     L+ +                         D+Y   EG      F+R +E S PQW+   P   APRTG+G+ PGEV+EV Q +    G+ FLRLA++RGW   RSP D                  GG            LFE L G  + D + Y F       VPI  GPGL+++ TG ++ PG   +AA RF P D + ++F+KLAD RGW+PVR ++
Sbjct: 1426 ITSTSVTSATNLKDCFCVKTGDELWFLLAKDDAEKDKWMTAVNALIYALYVQRIAXXXXXXXXXXXXXXXXSYRPPQDNYWEAEGATNMHGFFRAIEASTPQWVRAFPELDAPRTGDGVVPGEVVEVEQAIEKRSGAVFLRLADERGWVLLRSPHDMFXXXXXXXXXXXXXXXXGGCVXXXXXXRSTALFEQLRGDATVDNKLYGFLDPKMQPVPIYAGPGLKSKPTGDSLTPGCKVQAAMRFLPYDLSGMMFIKLADGRGWVPVRRNL 1694          
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Match: A0A6S8A7R9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8A7R9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.930e-20
Identity = 89/307 (28.99%), Postives = 140/307 (45.60%), Query Frame = 1
Query:   16 VMSLNSSEDKRGDLAKNRRRAPKWAQYYFRLRDNSLTKSPPRRSSF-------PGNSATESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAINLRARHLFQREHGVHDDYMGE-------GRRGR-----FFYRMVEGSVP-QWILTHPMSKAPRTGEGLFPGEVIEVTQVLSSEGSTFLRLANDRGWTYARSPTDGGVLFEDLAGGVSEDTEEYSFPSGASGM-------VPILYGPGLRTQATGATIRPGEHARAAERFTPVDNTK--------VVFVKLADERGWIPVR 831
             M+  +++ + G L K  +   +W   +F L D+ L     ++ ++        G S  E + MRL + +ITS+T+T+NCFCV +G++SWFL+A +  +M  W++ IN    H+    + + +   G        G  G      F Y  +   +    + TH    AP TG+ L PG+V+E+T+ L  +GST++RLA D GW     P      F  L GG +   E       A          VP+L GP    QA G +   GE      ++T     +          F KL+D RGW P++
Sbjct: 1207 AMAELATQRREGYLMKQGKWTSRWKPRWFVLEDSYLEYFEKKQHAYGRGGDKKQGKSKAE-KLMRLEAKSITSFTDTENCFCVSTGSVSWFLVAPNEREMAEWISHINA---HILSLRNDISNTDTGTDIARASFGSGGSSSSDFFEYARIAPDLDFVQVRTHASPGAPLTGQRLRPGDVVEITRKLELQGSTYVRLA-DFGWAPWLDPDASRPCFIPLEGGNASVPESLDPGKPAKFRLFKGTLPVPLLRGPTHYGQAHGESAIQGEIFEFIAQYTHAATPEPGFERDAYATFFKLSDGRGWAPLK 1508          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12451.2082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FJU8_ECTSI1.780e-15378.13PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5LIB2_9PHAE1.550e-14677.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPQ0_ECTSI5.140e-7851.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMS5_ECTSI7.250e-6244.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Q7_ECTSI7.520e-5842.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMW4_ECTSI3.120e-5041.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKN0_9PHAE4.320e-5041.64PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LHQ0_ECTSI1.730e-4247.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8E2_9STRA9.600e-4136.43P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6S8A7R9_9STRA7.930e-2028.99Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12451contigH-canaliculatus_F_contig12451:100..3424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.4
Seed ortholog evalue9.6e-70
Seed eggNOG ortholog2880.D7FPQ0
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-10_000540.1
Exons6
Model size873
Cds size855
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.9473906-CDS-H-canaliculatus_F_contig12451:99..2581622928960.9473906-CDS-H-canaliculatus_F_contig12451:99..258Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 100..258 -
1696845630.8270383-CDS-H-canaliculatus_F_contig12451:99..2581696845630.8270383-CDS-H-canaliculatus_F_contig12451:99..258Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 100..258 -
1622928960.9634848-CDS-H-canaliculatus_F_contig12451:933..10121622928960.9634848-CDS-H-canaliculatus_F_contig12451:933..1012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 934..1012 -
1696845630.836976-CDS-H-canaliculatus_F_contig12451:933..10121696845630.836976-CDS-H-canaliculatus_F_contig12451:933..1012Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 934..1012 -
1622928960.9759314-CDS-H-canaliculatus_F_contig12451:1239..14241622928960.9759314-CDS-H-canaliculatus_F_contig12451:1239..1424Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 1240..1424 -
1696845630.8453448-CDS-H-canaliculatus_F_contig12451:1239..14241696845630.8453448-CDS-H-canaliculatus_F_contig12451:1239..1424Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 1240..1424 -
1622928960.999642-CDS-H-canaliculatus_F_contig12451:1796..18661622928960.999642-CDS-H-canaliculatus_F_contig12451:1796..1866Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 1797..1866 -
1696845630.8537045-CDS-H-canaliculatus_F_contig12451:1796..18661696845630.8537045-CDS-H-canaliculatus_F_contig12451:1796..1866Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 1797..1866 -
1622928961.0167847-CDS-H-canaliculatus_F_contig12451:2716..28411622928961.0167847-CDS-H-canaliculatus_F_contig12451:2716..2841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 2717..2841 -
1696845630.8624666-CDS-H-canaliculatus_F_contig12451:2716..28411696845630.8624666-CDS-H-canaliculatus_F_contig12451:2716..2841Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 2717..2841 -
1622928961.0366113-CDS-H-canaliculatus_F_contig12451:3169..34061622928961.0366113-CDS-H-canaliculatus_F_contig12451:3169..3406Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 3170..3406 -
1696845630.8714614-CDS-H-canaliculatus_F_contig12451:3169..34061696845630.8714614-CDS-H-canaliculatus_F_contig12451:3169..3406Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12451 3170..3406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.0541856-UTR-H-canaliculatus_F_contig12451:3406..34241622928961.0541856-UTR-H-canaliculatus_F_contig12451:3406..3424Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12451 3407..3424 -
1696845630.8800821-UTR-H-canaliculatus_F_contig12451:3406..34241696845630.8800821-UTR-H-canaliculatus_F_contig12451:3406..3424Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12451 3407..3424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12451.2082.1prot_H-canaliculatus_F_contig12451.2082.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12451 100..3406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12451.2082.1

>prot_H-canaliculatus_F_contig12451.2082.1 ID=prot_H-canaliculatus_F_contig12451.2082.1|Name=mRNA_H-canaliculatus_F_contig12451.2082.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=285bp
MSLNSSEDKRGDLAKNRRRAPKWAQYYFRLRDNSLTKSPPRRSSFPGNSA
TESEEMRLTSYTITSYTNTKNCFCVRSGNMSWFLLARSLDDMKRWMAAIN
LRARHLFQREHGVHDDYMGEGRRGRFFYRMVEGSVPQWILTHPMSKAPRT
GEGLFPGEVIEVTQVLSSEGSTFLRLANDRGWTYARSPTDGGVLFEDLAG
GVSEDTEEYSFPSGASGMVPILYGPGLRTQATGATIRPGEHARAAERFTP
VDNTKVVFVKLADERGWIPVRTDVRGPPTVLHGW*
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mRNA from alignment at H-canaliculatus_F_contig12451:100..3424-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12451.2082.1 ID=mRNA_H-canaliculatus_F_contig12451.2082.1|Name=mRNA_H-canaliculatus_F_contig12451.2082.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3325bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12451:100..3424- (Hapterophycus canaliculatus Oshoro5f female)
TTGTCTCAGCTCAAGGTGATGAGCCTCAACTCATCAGAAGACAAGCGCGG CGACCTGGCCAAAAACCGCCGGAGAGCGCCCAAGTGGGCGCAGTACTACT TCCGCCTCCGCGACAACAGCCTCACCAAGTCGCCCCCCCGCAGGTCCTCT TTCCCAGGAAACAGCGCCACGGAATCCGAGGAGATGCGCCTGACCTCCTA CACCATCACCTCGTACACCAACACCAAGAACTGCTTCTGCGTGCGCAGCG GAAACGTGAGTGCGAAAATTGGTGTTTTTTTATTCCGTCCTTACCGGCGC GTGGCTCGTCGTTGTATCCTGCTAATGCCGCTGCTGCTGATGCTGCTGCT GCTGATCCTGGTGGAAGTTGGGTGATTGTTCCTCCGGGCCCGCGCCTTGA TGTTTCACCCGCAGCTGAGATCCATCCCAGCGTCTTCTGCAACACCTCAA CTTGCGTCTCCTTTGTAACACGGTAGTGTTTTGGAGTGGTCCTTGCTCGA CGCCCGCCTACCGGCACGGACCGTCCTGAGCCCCGCTCGCGTCCGTCCGC CTACTCGGCGTCGCCGGTTTGTGTGTCCCTCAGATGTCTTGGTTCCTTCT CGCCAGAAGCCTCGACGACATGAAGAGGTGGATGGCCGCCATCAATCTCC GCGCTCGACACCTCTTCCAGAGGGAGCATGGGGTCCACGATGACTACATG GGGGAAGGGTGAGAGCCGTTTGCTCGCAAGCCGCTGTGATAGCAGTGGGA GCGAAAGAGAGTGTGCAACCAACAATACTCGCGTGCTTGCTGAGGGTCTC TCACAGCAAACAGCAAAAATACGGATTATTTTAGAGAAAGCAAACAACAC CGTTGGAACACCTCCTGAGGTACGTCGTGCGAGGGGTAGCTCGAGGCTTC TGTTGAGCTCCAAAAAATGAGGGTTCATTGATGCGTAAGGCTGGGACAAA AGGATTAAGCTAACAGATTTTGCAAGTTCCTGCGATTTTATGTAACAGCA TCCTTTGAAAATGAAGCCTCTCGAAAAATACTTCCTGTGATGAGACGCCA AGATGTCGAGGAAGTGAACGAGTTCTCTGCAGTCCAGGCAAAACTTGGAA CCCTCATTGAATGGAATTAACAAAAGCCCCTTGAGATAGACAGTGTCTCA GGTGGGTATTCCTTCGGTGTTGTTGACTTGTTTTATAAAAACTTGGTATA GCCCACCCCGAGAGCATGTCAGTGGCCGAGCAGAAAGCAGATAGTGACCC GGACGAGAGGGTGCATGCAGGCGACTGTCATCATCATCCGCGGTTTTACA AGTTGTACTAAAAAAATACTTTTTACTTGGACAGGTGTAGTCTAGTGCCG GAGGGGGATCTTTCCGTAATGTTGATTTTTTTTCTCAAATTGTTGCCCTC CGGTTGGGAAAAAAGAACGGTTTTGCGCAAATACATTTTGTCTCGTGTGT GCAGCGCACGCACATTCGGTTGTGGGGTGTAGGTCCGTTTTTTCTCACCT CATGTTCTCCCATTTTTTTCCCTCTTTGCCCACCGAAAACACGCCTCTGG GATGACAGGCGCAGAGGAAGATTCTTCTACCGCATGGTGGAAGGCTCGGT TCCCCAATGGATCCTCACGCACCCCATGGTGAGAGATAAACAAGAGAGAC AAACAGAAACTATGGGGAAGGCAGAGATAAGAGACTAACAGACGCAAGAC GAAAATCGTGTCAAGAGGGGTAGAGAGGCAACACGGGCAGGAACGAAGGA AGGAAGGCAAGCAGGTGGCAGGCATGCAGACAGGCGAGGCAACTTAACAT ACTTCCCATCCTTTTCATGATATGTCTTGACCCTGACCTGCTGTCCCGTT ACTGTTCCACGACGATGTAGCTCTCGGACGAGCGTCTCTTTTTTTATTTC AACCGCGGTCTGCCTCACGTCGTGCCCCGCGTCCGTTCCCGGCTCCCAAT ACCACTCCCCGTCCGCCACACGCCAACGGCTCATGCCCTGCTCTGCTCAG AGCAAGGCTCCGCGCACCGGCGAGGGTCTCTTCCCTGGAGAGGTCATCGA GGTGACTCAGGTCCTGAGTTCCGAGGGCTCGACTTTCCTGCGGTTGGCCA ATGACCGCGGCTGGACGTACGCTAGGAGCCCGACGGATGGAGGCGTTTTG TTCGAGGACCTCGCGGGCGGCGTCTCAGAAGACACGTGAGATTGTTGTTG CTGCTGTTGGCGGCGAGGGATGGTGTCGATGGTTGTCGTTAGTGGTGGTG ATGCATCCCCGCTACAGACGCTGCTGCTGCTGCCAGGGCTGTTTCCCTAG ACATCAAGCGCGTGTTGACGGAAGAACTGTCGTGCTCGCGTTTCAAACCC CCACCCCTCCCGGCTTTTTCTTCCACCCGATCTGTGAAATTGTCGTCGAC TCTTTTCTTCAGGGAGGAGTACTCCTTCCCCTCTGGAGCGTCAGGCATGG TGCCTATCCTGTACGGACCGGGGCTCCGAACGCAGGCAACGGTGAGCAAG AGACCCGTGGATGTTTTCAGTCTCCGCCGATGTCGGACGTGGACGGCGTG GATGCACGGCCATGATATCTCGTCTTTTTTTGTTCGTCTGTTGGGAATGT CTCTGTGGCAAGGGGAGTGATTTGCAACCGACTATCCCAACCTCAAGGGA CGAAGAAAACGTCACATCGGAGCGGGAGAGGCTACCGCGGGGAGGCACTC GAAATGGTCTTCTTCCAGCGCAGTCAACCGTCGCTGTTACATAATACTGC GATTTCGAGGAGCGGTGCAGCTGCGCTGCTGCTGCTTTTCGGCGGCAAAG GTCTCCAATGCACCGCAGACAGCGGGAGCTTCGGCTGCTTGGTGTGGCTT GGGGACTGCTGCCCCTATTATCCACCATGTGTCCATTCGACGATGCGGTC GTCGATGCCCAGAATCACCCATGTCCTGCTTAGAGTCGAAGGACCACGCG GTTCGCGAATATCCCTTACATGGCTTTGCTCCTGCTCCTGGCGGACCCCC TCTCTCGTGCAACCCCATCCGACCCTCACCTCTGCTTGCCAGATGCACAT ACTTTCTCATCCTTTTCCTTACATCTTCCCCCTATCTTTCTCTGGGTCTG TGTGTTCGTCTTCCTGTCGCCTTCTCTTTCCTCCTTCCCGCCGTGTTTTT TTGTCGGCGCTCTCAGGGTGCCACGATCCGACCCGGGGAACACGCCCGTG CCGCCGAGCGTTTCACGCCCGTAGACAACACCAAGGTCGTCTTCGTCAAA CTGGCAGACGAACGGGGGTGGATCCCCGTGAGGACGGATGTCCGAGGGCC TCCCACCGTGCTTCACGGCTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12451:100..3424-

>mRNA_H-canaliculatus_F_contig12451.2082.1 ID=mRNA_H-canaliculatus_F_contig12451.2082.1|Name=mRNA_H-canaliculatus_F_contig12451.2082.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1710bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12451:100..3424- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCTCAACTCATCAGAAGACAAGCGCGGCGACCTGGCCAAAAACCG
CCGGAGAGCGCCCAAGTGGGCGCAGTACTACTTCCGCCTCCGCGACAACA
GCCTCACCAAGTCGCCCCCCCGCAGGTCCTCTTTCCCAGGAAACAGCGCC
ACGGAATCCGAGGAGATGCGCCTGACCTCCTACACCATCACCTCGTACAC
CAACACCAAGAACTGCTTCTGCGTGCGCAGCGGAAACATGAGCCTCAACT
CATCAGAAGACAAGCGCGGCGACCTGGCCAAAAACCGCCGGAGAGCGCCC
AAGTGGGCGCAGTACTACTTCCGCCTCCGCGACAACAGCCTCACCAAGTC
GCCCCCCCGCAGGTCCTCTTTCCCAGGAAACAGCGCCACGGAATCCGAGG
AGATGCGCCTGACCTCCTACACCATCACCTCGTACACCAACACCAAGAAC
TGCTTCTGCGTGCGCAGCGGAAACATGTCTTGGTTCCTTCTCGCCAGAAG
CCTCGACGACATGAAGAGGTGGATGGCCGCCATCAATCTCCGCGCTCGAC
ACCTCTTCCAGAGGGAGCATGGGGTCCACGATGACTACATGGGGGAAGGA
TGTCTTGGTTCCTTCTCGCCAGAAGCCTCGACGACATGAAGAGGTGGATG
GCCGCCATCAATCTCCGCGCTCGACACCTCTTCCAGAGGGAGCATGGGGT
CCACGATGACTACATGGGGGAAGGGCGCAGAGGAAGATTCTTCTACCGCA
TGGTGGAAGGCTCGGTTCCCCAATGGATCCTCACGCACCCCATGGCGCAG
AGGAAGATTCTTCTACCGCATGGTGGAAGGCTCGGTTCCCCAATGGATCC
TCACGCACCCCATGAGCAAGGCTCCGCGCACCGGCGAGGGTCTCTTCCCT
GGAGAGGTCATCGAGGTGACTCAGGTCCTGAGTTCCGAGGGCTCGACTTT
CCTGCGGTTGGCCAATGACCGCGGCTGGACGTACGCTAGGAGCCCGACGG
ATGGAGGCGTTTTGTTCGAGGACCTCGCGGGCGGCGTCTCAGAAGACACA
GCAAGGCTCCGCGCACCGGCGAGGGTCTCTTCCCTGGAGAGGTCATCGAG
GTGACTCAGGTCCTGAGTTCCGAGGGCTCGACTTTCCTGCGGTTGGCCAA
TGACCGCGGCTGGACGTACGCTAGGAGCCCGACGGATGGAGGCGTTTTGT
TCGAGGACCTCGCGGGCGGCGTCTCAGAAGACACGGAGGAGTACTCCTTC
CCCTCTGGAGCGTCAGGCATGGTGCCTATCCTGTACGGACCGGGGCTCCG
AACGCAGGCAACGGGAGGAGTACTCCTTCCCCTCTGGAGCGTCAGGCATG
GTGCCTATCCTGTACGGACCGGGGCTCCGAACGCAGGCAACGGGTGCCAC
GATCCGACCCGGGGAACACGCCCGTGCCGCCGAGCGTTTCACGCCCGTAG
ACAACACCAAGGTCGTCTTCGTCAAACTGGCAGACGAACGGGGGTGGATC
CCCGTGAGGACGGATGTCCGAGGGCCTCCCACCGTGCTTCACGGCTGGTG
AGGTGCCACGATCCGACCCGGGGAACACGCCCGTGCCGCCGAGCGTTTCA
CGCCCGTAGACAACACCAAGGTCGTCTTCGTCAAACTGGCAGACGAACGG
GGGTGGATCCCCGTGAGGACGGATGTCCGAGGGCCTCCCACCGTGCTTCA
CGGCTGGTGA
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