mRNA_H-canaliculatus_F_contig12342.2001.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12342.2001.1
Unique NamemRNA_H-canaliculatus_F_contig12342.2001.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: D7FT10_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT10_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.560e-52
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 1
Query:   19 RRQFGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPESPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGRR 342
            ++QFGE VIDYTEV+G  L+  +RLALFKCARVLVLTAVREGLNLIPLEYIFARGEPES GVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSE ER GRR
Sbjct:  509 QQQFGEGVIDYTEVVGNDLSAPERLALFKCARVLVLTAVREGLNLIPLEYIFARGEPESAGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSEAERSGRR 616          
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: A0A835Z7K4_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K4_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.070e-35
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 1
Query:   28 FGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPESPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGRR 342
            FG +V+DY+E  GT L    R+AL+ C+ VL  TAVREGLNL PLEYI+A  +P  PGVVLASEFSACSSLLNGA+RINPFDVA TA A  QALTM   ER GRR
Sbjct:  541 FGANVLDYSEAKGTGLPLPARMALYLCSDVLACTAVREGLNLYPLEYIYAHSDPRPPGVVLASEFSACSSLLNGAVRINPFDVAGTAAALDQALTMEGAERSGRR 645          
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: A0A7S1ZKM1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZKM1_TRICV)

HSP 1 Score: 122 bits (306), Expect = 1.370e-30
Identity = 63/109 (57.80%), Postives = 84/109 (77.06%), Query Frame = 1
Query:   19 RRQFGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPES-PGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGRR 342
            RR+FG+  +DY E+ G+SL   +RLAL++ + ++V++AVREGLNL+PLEYI+AR +P S PG+ +ASEFSA  S LNGA+RINPFDV  TA    +ALTM   ER+GRR
Sbjct:  250 RRKFGDLTVDYEEIHGSSLPIVERLALWRASDLMVVSAVREGLNLLPLEYIYAREKPHSAPGITVASEFSAVCSELNGALRINPFDVPGTASVLDKALTMDPQEREGRR 358          
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: A0A7R9WD76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WD76_9STRA)

HSP 1 Score: 117 bits (294), Expect = 7.980e-30
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   22 RQFGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPE-SPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGR 339
            + FG +VIDY EV GTSL    RLAL+  + +++++AVREGLN++PLEY +AR +P   PGV++ASEF A  ++LNGAMRINPFD+ +TA    +ALTM   ER+ R
Sbjct:   13 KTFGPEVIDYEEVAGTSLPIDRRLALWTASEIMLISAVREGLNMLPLEYTYARAKPPLKPGVIIASEFCAVCNILNGAMRINPFDLQRTASTIDKALTMDMNERESR 119          
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: A0A7S2REF4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2REF4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.780e-29
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   13 VRR--RQFGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPESPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGRR 342
            VRR   +F   VI+Y EV+G+SL    RLAL+  + V++ T +REGLNL+PLEYI+AR EP  PG+V+ASEF+A  S+LNGA+R+NPFD+  T  +  +ALTM   ER+GRR
Sbjct:  632 VRRITEKFSSSVINYEEVMGSSLPIDQRLALWTASDVMMTTPIREGLNLLPLEYIYARKEPAKPGIVIASEFAAVCSILNGALRVNPFDIQMTVTSIDKALTMEVEEREGRR 743          
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: A0A7S3LGS2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGS2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.790e-29
Identity = 64/116 (55.17%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 VAAGVRRRQ--FGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPESPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGRR 342
            V A V+R Q  FG DVIDY EV GTSL    RLA +K   +L++T +REGLN  P+E+I+A  EPE+PGVV+ASEFSA SS+LNGA+R+NP+D+        +AL+M   ER+GRR
Sbjct:  688 VRALVKRIQEKFGNDVIDYQEVNGTSLPLDQRLAFWKAIDILMVTPIREGLNHWPMEFIYAHKEPETPGVVIASEFSAISSILNGALRVNPYDIQMMIATIDKALSMEMHEREGRR 803          
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: A0A7S1ZUA6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUA6_TRICV)

HSP 1 Score: 120 bits (301), Expect = 2.400e-29
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   19 RRQFGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPESPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGRR 342
            +  FG  VIDY E+I +SL    RLAL+  A VLV T VREGLNL+PLEYIF+R +P +PGVV+ SEF+A SS+LNGA+R+NP+D+     +  +ALTM   ER+ RR
Sbjct:  397 QEHFGHSVIDYEEIICSSLPMDQRLALWSAADVLVTTPVREGLNLLPLEYIFSRRDPGTPGVVITSEFAAVSSILNGALRVNPYDIQMFVTSIDKALTMDSNEREARR 504          
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: A0A1Z5K0A5_FISSO (Trehalose 6-phosphate synthase/phosphatase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0A5_FISSO)

HSP 1 Score: 119 bits (297), Expect = 8.430e-29
Identity = 64/116 (55.17%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 VAAGVRRRQ--FGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPESPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGRR 342
            V A V+R Q  FG  VIDY E  G++L    R+AL++ + +L+ TA+REGLNL P+EYIFA  EPE PGVV+ SEFSA SS+LNGA+RINP+D+  +     +ALTM+  ER+GRR
Sbjct:  645 VRALVKRIQEKFGPAVIDYQEFSGSTLPMDQRMALWRASDILMSTAIREGLNLWPMEYIFAHREPEIPGVVITSEFSAVSSILNGALRINPYDIPMSIITIDKALTMTMQEREGRR 760          
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: A0A8J9XAP8_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9XAP8_PHATR)

HSP 1 Score: 118 bits (296), Expect = 9.720e-29
Identity = 57/106 (53.77%), Postives = 78/106 (73.58%), Query Frame = 1
Query:   25 QFGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPESPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGRR 342
            +FG +VIDY E+ G+S+    RLA++K + +L+ T +REGLN  P+EYI A  EPE PGVV+ SEFSA SS+LNGA+R+NPFD+  T     +AL+M + ER+GRR
Sbjct:  431 KFGPEVIDYVELAGSSIPMDRRLAMWKASDILMSTPIREGLNHWPMEYIHAHKEPEVPGVVITSEFSAISSILNGALRVNPFDIQMTVSTIDKALSMGQEEREGRR 536          
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Match: B7G836_PHATC (Bifunctional trehalose-6-phosphate synthase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G836_PHATC)

HSP 1 Score: 118 bits (296), Expect = 1.150e-28
Identity = 57/106 (53.77%), Postives = 78/106 (73.58%), Query Frame = 1
Query:   25 QFGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLNLIPLEYIFARGEPESPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFAQALTMSETERQGRR 342
            +FG +VIDY E+ G+S+    RLA++K + +L+ T +REGLN  P+EYI A  EPE PGVV+ SEFSA SS+LNGA+R+NPFD+  T     +AL+M + ER+GRR
Sbjct:  683 KFGPEVIDYVELAGSSIPMDRRLAMWKASDILMSTPIREGLNHWPMEYIHAHKEPEVPGVVITSEFSAISSILNGALRVNPFDIQMTVSTIDKALSMGQEEREGRR 788          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12342.2001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT10_ECTSI3.560e-5287.96Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A835Z7K4_9STRA2.070e-3567.62Trehalose 6-phosphate phosphatase n=1 Tax=Tribonem... [more]
A0A7S1ZKM1_TRICV1.370e-3057.80Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7R9WD76_9STRA7.980e-3054.21Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2REF4_9STRA1.780e-2954.46Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3LGS2_9STRA1.790e-2955.17Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1ZUA6_TRICV2.400e-2955.56Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5K0A5_FISSO8.430e-2955.17Trehalose 6-phosphate synthase/phosphatase n=2 Tax... [more]
A0A8J9XAP8_PHATR9.720e-2953.77Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7G836_PHATC1.150e-2853.77Bifunctional trehalose-6-phosphate synthase n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12342contigH-canaliculatus_F_contig12342:2093..3146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue2.4e-24
Seed eggNOG ortholog2850.Phatr15140
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
EggNOG free text desc.Glycosyltransferase family 20
EggNOG OGs2XBJP@2836,COG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928950.3389573-CDS-H-canaliculatus_F_contig12342:2092..22931622928950.3389573-CDS-H-canaliculatus_F_contig12342:2092..2293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12342 2093..2293 -
1696845626.1530619-CDS-H-canaliculatus_F_contig12342:2092..22931696845626.1530619-CDS-H-canaliculatus_F_contig12342:2092..2293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12342 2093..2293 -
1622928950.3853443-CDS-H-canaliculatus_F_contig12342:3005..31461622928950.3853443-CDS-H-canaliculatus_F_contig12342:3005..3146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12342 3006..3146 -
1696845626.1699848-CDS-H-canaliculatus_F_contig12342:3005..31461696845626.1699848-CDS-H-canaliculatus_F_contig12342:3005..3146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12342 3006..3146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12342.2001.1prot_H-canaliculatus_F_contig12342.2001.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12342 2093..3146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12342.2001.1

>prot_H-canaliculatus_F_contig12342.2001.1 ID=prot_H-canaliculatus_F_contig12342.2001.1|Name=mRNA_H-canaliculatus_F_contig12342.2001.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
VAAGVRRRQFGEDVIDYTEVIGTSLATQDRLALFKCARVLVLTAVREGLN
LIPLEYIFARGEPESPGVVLASEFSACSSLLNGAMRINPFDVAKTAGAFA
QALTMSETERQGRR
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mRNA from alignment at H-canaliculatus_F_contig12342:2093..3146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12342.2001.1 ID=mRNA_H-canaliculatus_F_contig12342.2001.1|Name=mRNA_H-canaliculatus_F_contig12342.2001.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1054bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12342:2093..3146- (Hapterophycus canaliculatus Oshoro5f female)
GTGGCTGCGGGTGTGCGACGCAGGCAATTCGGGGAGGATGTGATCGACTA CACGGAGGTGATCGGGACGTCGCTTGCGACGCAGGACAGGCTGGCGCTGT TCAAGTGCGCGAGAGTGTTGGTGCTCACGGCTGTCCGCGAGGTGAGGAAT CGCGATCCACATCAACCGCTGTTGGTCGCCGTCGTCGTCGTTGCCGCTGC TGCTGCTGTTGTTGGGAGGCTTGCTCTCGTTGCTGTGTCCGCGGTGCTCA CGAGATCGTCAATCTCCTTCGTGTTACAGTAGGAACCCCGCGGGGTACGG TCTGCTCGTGGGCGTCGAACAGGCTCGTAGTGATCGACGCTTTGCGGCAG GAGAGCCCGGTCACGCAGGCCCCTCGGTAGCGTTCGTCGGAGAGTTTAGT CCCGGGGGGCTCGGTGGTGGTGGCTGGGGGGCTGTGGTGGTGGTGGTGGT GGTGGTGGTGTATGCGCGCAGAAAGTCGTGTCATGCCGCCCGAGTGTATT CATCCCCGTCTTTCCTCCCGCTGCACGAACGTCGTCGGCCTTGACTCAAG GCTGCGTGTGACGGCGTGGGGGTGATTCTGCCGGCCAAATTCTTTTGTTG CGGCCGTGTGCCGCCTCAACATCGTGGCATTTTTTTTCGGTTTTTTTATG CCCTCCGCAAAGAGAAAGGACGCGTCGTCTTGTTCACCGCCGAAGCCCTC TGCCAACTTCCCGACCATCGCGTCGTCTCGCGTCTCTCACACTCCCACCT CCGAAACCGCTGCACCCTCAACTGTCCCGGCGTTCGTTCGATCGCCGCGA TCATGTCCCCGCGCACAAAAACACACACACACACACACACACAAACACAA AAGGGCCTGAACCTGATCCCTCTGGAGTACATCTTCGCGAGGGGAGAGCC GGAGTCGCCGGGGGTGGTGCTTGCGTCGGAGTTCTCCGCCTGCTCCAGCC TCCTCAACGGAGCCATGCGCATCAACCCCTTCGACGTCGCCAAGACCGCC GGGGCCTTCGCGCAAGCGCTCACCATGAGCGAGACTGAAAGGCAAGGACG ACGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12342:2093..3146-

>mRNA_H-canaliculatus_F_contig12342.2001.1 ID=mRNA_H-canaliculatus_F_contig12342.2001.1|Name=mRNA_H-canaliculatus_F_contig12342.2001.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12342:2093..3146- (Hapterophycus canaliculatus Oshoro5f female)
GTGGCTGCGGGTGTGCGACGCAGGCAATTCGGGGAGGATGTGATCGACTA
CACGGAGGTGATCGGGACGTCGCTTGCGACGCAGGACAGGCTGGCGCTGT
TCAAGTGCGCGAGAGTGTTGGTGCTCACGGCTGTCCGCGAGGTGGCTGCG
GGTGTGCGACGCAGGCAATTCGGGGAGGATGTGATCGACTACACGGAGGT
GATCGGGACGTCGCTTGCGACGCAGGACAGGCTGGCGCTGTTCAAGTGCG
CGAGAGTGTTGGTGCTCACGGCTGTCCGCGAGGGCCTGAACCTGATCCCT
CTGGAGTACATCTTCGCGAGGGGAGAGCCGGAGTCGCCGGGGGTGGTGCT
TGCGTCGGAGTTCTCCGCCTGCTCCAGCCTCCTCAACGGAGCCATGCGCA
TCAACCCCTTCGACGTCGCCAAGACCGCCGGGGCCTTCGCGCAAGCGCTC
ACCATGAGCGAGACTGAAAGGCAAGGACGACGGGGCCTGAACCTGATCCC
TCTGGAGTACATCTTCGCGAGGGGAGAGCCGGAGTCGCCGGGGGTGGTGC
TTGCGTCGGAGTTCTCCGCCTGCTCCAGCCTCCTCAACGGAGCCATGCGC
ATCAACCCCTTCGACGTCGCCAAGACCGCCGGGGCCTTCGCGCAAGCGCT
CACCATGAGCGAGACTGAAAGGCAAGGACGACGG
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