mRNA_H-canaliculatus_F_contig12148.1856.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: D7G2G7_ECTSI (Predicted: Tubulin-tyrosine ligase-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G7_ECTSI) HSP 1 Score: 139 bits (349), Expect = 3.150e-36 Identity = 73/95 (76.84%), Postives = 77/95 (81.05%), Query Frame = 1
Query: 1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRLS 285
RAMILSVF+AAARQQPGM ARA+YGCDVMVT LEPRLLEVTFSPGNLAASPAW VQ+PDFLNEAFGCLFLGEQKNVTRL+
Sbjct: 637 RAMILSVFRAAARQQPGMRNGSARAMYGCDVMVTAALEPRLLEVTFSPGNLAASPAW-----------TVQRPDFLNEAFGCLFLGEQKNVTRLA 720
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A6H5KI06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI06_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.140e-35 Identity = 72/95 (75.79%), Postives = 76/95 (80.00%), Query Frame = 1
Query: 1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRLS 285
RAMILSVF+AA RQQPGM ARA+YGCDVMVT LEPRLLEVTFSPGNLAASPAW VQ+PDFLNEAFGCLFLGEQKNVTRL+
Sbjct: 645 RAMILSVFRAATRQQPGMRNGSARAMYGCDVMVTAALEPRLLEVTFSPGNLAASPAW-----------TVQRPDFLNEAFGCLFLGEQKNVTRLA 728
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A388KR02_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KR02_CHABU) HSP 1 Score: 80.1 bits (196), Expect = 1.770e-15 Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
+AM VF+ AA QP M C ARAIYGCDVM+ E+++P+LLEVT+ P + + L + +F N FGCLFL E+KNVT L
Sbjct: 631 KAMFREVFEGAAMVQPDMHCEYARAIYGCDVMLDENMQPKLLEVTYCPD---CTRGFTFEMTRLSDGAIIDPKEFYNTIFGCLFLDERKNVTSL 721
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A3S6KFN5_9SPER (Putative tubulin-tyrosine ligase n=17 Tax=Cupressaceae TaxID=3367 RepID=A0A3S6KFN5_9SPER) HSP 1 Score: 78.2 bits (191), Expect = 8.470e-15 Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
RAMI +VF++A+ P M CP ARAIYG DVM+ + +P+LLEVT+ P A + V A G E ++ +F N+ FGCLFL + ++V++L
Sbjct: 777 RAMIRAVFESASALHPEMHCPTARAIYGVDVMIDSEFQPKLLEVTYCPDCTRAC-KYDVKAVVGSG-EIIKGSEFFNDIFGCLFLNDSRHVSQL 868
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A6A6KE47_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6KE47_HEVBR) HSP 1 Score: 73.2 bits (178), Expect = 4.790e-13 Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
+AMI SVF+AAA+ P M P +RA+YG DVM+ P+LLEVT+ P A + L E ++ DF+N FGCLFL E NV+ L
Sbjct: 604 KAMIRSVFEAAAQVHPEMHSPTSRAMYGVDVMLDRSFRPKLLEVTYCPDCTRACKY--DTRSILGDGEIIKGQDFINYVFGCLFLDETTNVSPL 695
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: UPI000B79A6E7 (LOW QUALITY PROTEIN: tubulin--tyrosine ligase-like protein 12 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B79A6E7) HSP 1 Score: 73.2 bits (178), Expect = 4.860e-13 Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
+AMI SVF+AAA+ P M P +RA+YG DVM+ P+LLEVT+ P A + L E ++ DF+N FGCLFL E NV+ L
Sbjct: 778 KAMIRSVFEAAAQVHPEMHSPTSRAMYGVDVMLDRSFRPKLLEVTYCPDCTRACKY--DTRSILGDGEIIKGQDFINYVFGCLFLDETTNVSPL 869
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: UPI00125E4C8B (tubulin--tyrosine ligase-like protein 12 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E4C8B) HSP 1 Score: 71.2 bits (173), Expect = 2.300e-12 Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1
Query: 1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
R+MI SVF++AA P M P++RA+YG DVM+ + +P+LLEVT+ P A + A + G E V+ DF N FGCLFL E +V+ L
Sbjct: 771 RSMIRSVFESAASVHPEMHHPKSRAMYGVDVMLDSNFQPKLLEVTYCPDCKRAC-TYDTEA-VVKGGETVKGRDFYNYVFGCLFLDETNHVSPL 862
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A8J8NA98_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NA98_HALGN) HSP 1 Score: 70.5 bits (171), Expect = 4.170e-12 Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 1
Query: 46 PGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
PG A R RA+YG DVM+T+D +P++LEVTF P CG P F NE FGCL+ ++KN+ R+
Sbjct: 493 PGEASRRCRAMYGVDVMITDDYQPKILEVTFQPD---------------CGRACKFNPSFFNEVFGCLYFNDEKNMIRI 556
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: A0A162AM84_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162AM84_DAUCS) HSP 1 Score: 66.6 bits (161), Expect = 9.700e-11 Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 1 RAMILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPG-NLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
R MI S F++AA P M P +RA+YG DVM+ + +P+LLEVT+ P N A + + E V+ DF N FGCLFL E +V++L
Sbjct: 784 RGMIKSAFESAALVHPEMHNPMSRAMYGVDVMLDTNFQPKLLEVTYCPDCNRACK--YDTKSVLRGETETVKGQDFYNYVFGCLFLNETAHVSQL 876
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Match: J9IQP0_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IQP0_9SPIT) HSP 1 Score: 65.9 bits (159), Expect = 1.810e-10 Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 1
Query: 64 RARAIYGCDVMVTEDLEPRLLEVTFSPGNLAASPAWPVSAGFLCGHEAVQQPDFLNEAFGCLFLGEQKNVTRL 282
+ R+IYG D+MV + EP++LE TFSP C PDF NE FGCLFL E KNVT++
Sbjct: 806 KCRSIYGVDIMVNDQFEPKILEATFSPD---------------CKRACRFNPDFFNEVFGCLFLNETKNVTKI 863 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12148.1856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12148.1856.1 >prot_H-canaliculatus_F_contig12148.1856.1 ID=prot_H-canaliculatus_F_contig12148.1856.1|Name=mRNA_H-canaliculatus_F_contig12148.1856.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=94bp MILSVFKAAARQQPGMACPRARAIYGCDVMVTEDLEPRLLEVTFSPGNLAback to top mRNA from alignment at H-canaliculatus_F_contig12148:180..1034+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12148.1856.1 ID=mRNA_H-canaliculatus_F_contig12148.1856.1|Name=mRNA_H-canaliculatus_F_contig12148.1856.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=855bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12148:180..1034+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12148:180..1034+ >mRNA_H-canaliculatus_F_contig12148.1856.1 ID=mRNA_H-canaliculatus_F_contig12148.1856.1|Name=mRNA_H-canaliculatus_F_contig12148.1856.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=564bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12148:180..1034+ (Hapterophycus canaliculatus Oshoro5f female)back to top |