mRNA_H-canaliculatus_F_contig11625.1436.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11625.1436.1
Unique NamemRNA_H-canaliculatus_F_contig11625.1436.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11625.1436.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 4.280e-76
Identity = 133/152 (87.50%), Postives = 141/152 (92.76%), Query Frame = 3 
Query:    3 ASRGGGGMPILPGEVAAMRRQRLVKAAEPLNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPLILPPIKPPRRRKTLWDFLLDEMRLIATDYHEERKLSRHLLGGVAKRMQLARRELCEGRPEALDGRVADAGKSIRRHISLLTSSPP 458
            ASRGGGG+PI PGEVAAMRRQRLVKAAEP NQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKP ILPP+KPPRRRKTLWDFLLDEMRLIATDY+EERKL+RHLL GVA R +LARRE CEGRP+A DGRVADAG +I RH+SLL SSPP
Sbjct:  250 ASRGGGGLPIPPGEVAAMRRQRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARREFCEGRPQARDGRVADAGVAICRHLSLLGSSPP 401
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BLAST of mRNA_H-canaliculatus_F_contig11625.1436.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 8.180e-75
Identity = 132/151 (87.42%), Postives = 140/151 (92.72%), Query Frame = 3 
Query:    3 ASRGGGGMPILPGEVAAMRRQRLVKAAEPLNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPLILPPIKPPRRRKTLWDFLLDEMRLIATDYHEERKLSRHLLGGVAKRMQLARRELCEGRPEALDGRVADAGKSIRRHISLLTSSP 455
            ASRG GG+PILPGEVAAMRR RLVKAAEP NQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKP ILPP+KPPRRRKTLWDFLLDEMRLIATDY+EERKL+RHLL GVA R +LARRELCEGRP+A DGRVADAG +I RH+SLL SSP
Sbjct:  682 ASRGEGGLPILPGEVAAMRRHRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARRELCEGRPQARDGRVADAGVAICRHLSLLASSP 832
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11625.1436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE4.280e-7687.50SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FME7_ECTSI8.180e-7587.42Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11625contigH-canaliculatus_F_contig11625:751..2140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size536
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11625.1436.1prot_H-canaliculatus_F_contig11625.1436.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11625 774..2140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.132086-UTR-H-canaliculatus_F_contig11625:750..7731622928855.132086-UTR-H-canaliculatus_F_contig11625:750..773Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11625 751..773 +
1696845590.1282394-UTR-H-canaliculatus_F_contig11625:750..7731696845590.1282394-UTR-H-canaliculatus_F_contig11625:750..773Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11625 751..773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.1487186-CDS-H-canaliculatus_F_contig11625:773..9711622928855.1487186-CDS-H-canaliculatus_F_contig11625:773..971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11625 774..971 +
1696845590.1370785-CDS-H-canaliculatus_F_contig11625:773..9711696845590.1370785-CDS-H-canaliculatus_F_contig11625:773..971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11625 774..971 +
1622928855.1650078-CDS-H-canaliculatus_F_contig11625:1458..16081622928855.1650078-CDS-H-canaliculatus_F_contig11625:1458..1608Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11625 1459..1608 +
1696845590.1464868-CDS-H-canaliculatus_F_contig11625:1458..16081696845590.1464868-CDS-H-canaliculatus_F_contig11625:1458..1608Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11625 1459..1608 +
1622928855.180884-CDS-H-canaliculatus_F_contig11625:1975..21401622928855.180884-CDS-H-canaliculatus_F_contig11625:1975..2140Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11625 1976..2140 +
1696845590.1548347-CDS-H-canaliculatus_F_contig11625:1975..21401696845590.1548347-CDS-H-canaliculatus_F_contig11625:1975..2140Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11625 1976..2140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11625.1436.1

>prot_H-canaliculatus_F_contig11625.1436.1 ID=prot_H-canaliculatus_F_contig11625.1436.1|Name=mRNA_H-canaliculatus_F_contig11625.1436.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=171bp
MPILPGEVAAMRRQRLVKAAEPLNQRGLTRFQLSQMLEEKTKAFKDVRAR
LRLVLERKPLILPPIKPPRRRKTLWDFLLDEMRLIATDYHEERKLSRHLL
GGVAKRMQLARRELCEGRPEALDGRVADAGKSIRRHISLLTSSPPRAGVK
KPPVQNGAAGRGGAGKGLLLT
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mRNA from alignment at H-canaliculatus_F_contig11625:751..2140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11625.1436.1 ID=mRNA_H-canaliculatus_F_contig11625.1436.1|Name=mRNA_H-canaliculatus_F_contig11625.1436.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11625:751..2140+ (Hapterophycus canaliculatus Oshoro5f female)
AGGCGTCTCGAGGGGGGGGGGGCATGCCCATCCTCCCCGGGGAGGTCGCC
GCCATGCGCCGCCAGCGCCTCGTCAAGGCCGCCGAGCCCCTGAACCAGAG
AGGGCTGACGAGGTTCCAGCTGTCGCAAATGTTGGAGGAGAAAACGAAGG
CGTTCAAGGACGTGCGCGCAAGGCTACGCCTCGTGCTGGAGCGGAAACCC
CTCATCCTGCCTCCCATCAAGGTGGGCGAAGTTTTTAATTCTTTTTTACC
TTCTCTGTCTCCCTCTGTTGCTTCTTCTTGTTTCACTGGTTCTCTTACCT
TTTGTTGCTGTTGAGCGGTTTTGATGTGAAATATCGAGCAACTCCGCACG
TCCAAGCTTGAACCCAGGTCAGGATTAGATCGTTCTGTCACTCTGTCCAA
GTGGGGATGGAGGTGCTTGCATTGGACCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCTCTCCTCCCCCTCC
GCTCCCCCCCCCCCCNNNNNNNNNNAATATCCAGCAGCCCCCCCCGGCCC
AGCTTGCACCCAGGGTCGGATTAACTCCCTCCCTCCCTCCGTCCAAGGGG
GGGTGGGGGGGTGTCGCTTGGCCCCCCCCCCCCCCCCCCCTCCATCTCTC
TGCCTCTTTTCTCCCCTCCATGCTCTCCTTTCTCCTCATCTCTGGCATGG
CACCGCAGCCTCCCCGGAGACGCAAGACCTTGTGGGACTTCCTGCTGGAC
GAGATGCGCCTCATTGCCACCGACTACCACGAGGAGAGAAAGCTGTCCAG
GCACCTCTTGGGAGGGGTAGCCAAGCGGATGCAGCTGGCCAGAAGAGAGC
TGTGCGAGGTGATTCTTTTGCTTGCCCGGAGGCAACTTTCGTGCGTGGAT
ACCTTAGCCTTCCGTCTCCCCCCCAAAAGTGGGCGCTTGGAAGAGGACAG
GCAGCTTTTTCGTCTCGTCTCGTGTTGGTTTTGCGTCGCTGCGTAGAGTC
GTCTGCTCGGCTTGGGCAATGCCTCGTGTTCGGGTCTGGTGTGTTGTCGA
ACGTTCTTCGGCGGCGTGTTCCCTGATTCGTGAAACAGAAGGCTGCCGAC
TCTTGCAGTATCCTATCCCGCCCCGGCTGCCCCTCTAGCATTGCTCCGCA
CCCACAAAAAACGTTCCTGGACTCTCTCTGTTCCCGTTGCCGGAAACACT
TTTCTTTCTTTTGTTGTTTCGCCAGGGGCGCCCGGAGGCACTAGACGGAC
GTGTAGCCGACGCGGGGAAGTCGATTCGACGCCACATCTCTCTCCTCACC
TCTAGCCCTCCCCGCGCTGGAGTGAAGAAGCCTCCGGTTCAGAACGGGGC
GGCGGGGAGAGGGGGCGCGGGGAAGGGCCTCTTGCTGACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11625:751..2140+

>mRNA_H-canaliculatus_F_contig11625.1436.1 ID=mRNA_H-canaliculatus_F_contig11625.1436.1|Name=mRNA_H-canaliculatus_F_contig11625.1436.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11625:751..2140+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCATCCTCCCCGGGGAGGTCGCCGCCATGCGCCGCCAGCGCCTCGT
CAAGGCCGCCGAGCCCCTGAACCAGAGAGGGCTGACGAGGTTCCAGCTGT
CGCAAATGTTGGAGGAGAAAACGAAGGCGTTCAAGGACGTGCGCGCAAGG
CTACGCCTCGTGCTGGAGCGGAAACCCCTCATCCTGCCTCCCATCAAGAT
GCCCATCCTCCCCGGGGAGGTCGCCGCCATGCGCCGCCAGCGCCTCGTCA
AGGCCGCCGAGCCCCTGAACCAGAGAGGGCTGACGAGGTTCCAGCTGTCG
CAAATGTTGGAGGAGAAAACGAAGGCGTTCAAGGACGTGCGCGCAAGGCT
ACGCCTCGTGCTGGAGCGGAAACCCCTCATCCTGCCTCCCATCAAGCCTC
CCCGGAGACGCAAGACCTTGTGGGACTTCCTGCTGGACGAGATGCGCCTC
ATTGCCACCGACTACCACGAGGAGAGAAAGCTGTCCAGGCACCTCTTGGG
AGGGGTAGCCAAGCGGATGCAGCTGGCCAGAAGAGAGCTGTGCGAGCCTC
CCCGGAGACGCAAGACCTTGTGGGACTTCCTGCTGGACGAGATGCGCCTC
ATTGCCACCGACTACCACGAGGAGAGAAAGCTGTCCAGGCACCTCTTGGG
AGGGGTAGCCAAGCGGATGCAGCTGGCCAGAAGAGAGCTGTGCGAGGGGC
GCCCGGAGGCACTAGACGGACGTGTAGCCGACGCGGGGAAGTCGATTCGA
CGCCACATCTCTCTCCTCACCTCTAGCCCTCCCCGCGCTGGAGTGAAGAA
GCCTCCGGTTCAGAACGGGGCGGCGGGGAGAGGGGGCGCGGGGAAGGGCC
TCTTGCTGACCGGGCGCCCGGAGGCACTAGACGGACGTGTAGCCGACGCG
GGGAAGTCGATTCGACGCCACATCTCTCTCCTCACCTCTAGCCCTCCCCG
CGCTGGAGTGAAGAAGCCTCCGGTTCAGAACGGGGCGGCGGGGAGAGGGG
GCGCGGGGAAGGGCCTCTTGCTGACC
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