mRNA_H-canaliculatus_F_contig11615.1426.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11615.1426.1
Unique NamemRNA_H-canaliculatus_F_contig11615.1426.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A6H5JSV0_9PHAE (TRUD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.580e-29
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 3
Query:   69 EAKVEVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRPAAQNVPPTASPPPAS 350
            E +  V+RV+AE  RAGVF+IKHVVLPLPG+SV FPL++VGEEML SLKQDGVDDVIL GHPQ+ FDL GAYRHV+V P   +V P    PPA+
Sbjct:  220 EGQGGVVRVSAEVARAGVFTIKHVVLPLPGNSVMFPLNAVGEEMLMSLKQDGVDDVILNGHPQRAFDLEGAYRHVMVHPRDFDVKPE---PPAA 310          
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: D7FYR3_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR3_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 3.890e-29
Identity = 69/95 (72.63%), Postives = 75/95 (78.95%), Query Frame = 3
Query:   12 RGAGGDXXXXXXXXXXEEAEAKVEVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVV 296
            RG GG+     XXXXX       EV+RVTAEA RAGVF+IKHVVLPLPG+SV FPL+ VGEEML SLKQDGVDDVIL GHPQK FDL GAYRHV+
Sbjct:  471 RGRGGNRDGREXXXXXXXXXXXEEVVRVTAEAARAGVFTIKHVVLPLPGNSVMFPLNPVGEEMLVSLKQDGVDDVILNGHPQKAFDLEGAYRHVM 565          
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A836CLL9_9STRA (TRUD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.100e-8
Identity = 38/93 (40.86%), Postives = 48/93 (51.61%), Query Frame = 3
Query:   66 AEAKVEVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP---AAQNVPPTAS 335
            A   + V  V  E    G F I+HVV        + P H VG   L  L  DGV + +L+GHPQ  F L GAYRH++V+P   AA   P TA+
Sbjct:  623 APPSIRVYMVEDEDAEQGRFGIEHVV--------EHPAHVVGTRTLHRLYADGVHETVLDGHPQSDFTLMGAYRHLIVKPEEIAAAATPSTAA 707          
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A7S2N074_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N074_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 2.480e-7
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 3
Query:   69 EAKVEVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVG---EEMLA--SLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP 305
            +A + V  VT     AG++SI  V+LPLPGHSVK P H+V      +LA  SL  D  D      HP ++  L G+YR V+ +P
Sbjct:   64 DASIAVHVVTEAEAAAGIYSIHDVLLPLPGHSVKLPDHTVSAVYSRVLAEWSLTMDSFD------HPSRELKLPGSYRRVLEKP 141          
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: UPI001652067B (pseudouridylate synthase 7 homolog n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI001652067B)

HSP 1 Score: 58.9 bits (141), Expect = 1.850e-6
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 3
Query:  123 FSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP 305
            +S++ VVLPLPGHS+ +P + V +     L++DG+D   +E  PQK + L GAYRH+VV P
Sbjct:  601 YSLRDVVLPLPGHSIVYPDNHVRDWYRLMLQEDGLDIDKME-RPQKDYSLPGAYRHLVVYP 660          
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A225WC41_9STRA (Pseudouridylate synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WC41_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.110e-5
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 3
Query:   81 EVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGH----PQKQFDLAGAYRHVVVRP 305
            EVM +T   V  G++SI+ VVLPLPGH+VK+P + +G      L  DG+D   L  H      + + L G+YR++V RP
Sbjct:  543 EVMELTEANV--GLYSIEDVVLPLPGHAVKYPTNEIGAAYRKMLTTDGID---LNAHFGPDGSQTYPLNGSYRNLVKRP 616          
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: UPI001BB176DB (pseudouridylate synthase 7 homolog n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB176DB)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-5
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 3
Query:  123 FSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP 305
            F+I  VVLPLPGH VK+P+H  G+     L +DG+   +L+ +  +   L+GAYR  VV+P
Sbjct:  177 FTIYDVVLPLPGHGVKYPVHQAGKWFTEELAKDGLTVEMLK-NSNRDLSLSGAYRKCVVKP 236          
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: H3GXX2_PHYRM (TRUD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXX2_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 1.520e-5
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 3
Query:   81 EVMRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGH----PQKQFDLAGAYRHVVVRP 305
            EVM +T + V  G +SI+ VVLPLPGH++K+P + +G      L  DG+D   L  H      + + L G+YRH+V +P
Sbjct:  578 EVMALTDDNV--GQYSIEDVVLPLPGHTIKYPTNEIGAAYRKMLTTDGID---LNAHFGPDGSQTYVLDGSYRHLVKKP 651          
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: M4BIJ7_HYAAE (TRUD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIJ7_HYAAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.030e-5
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 3
Query:   63 EAEAKVEVMRVTAEAVRAGV--FSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGH----PQKQFDLAGAYRHVVVRP 305
            E  AK + ++ T E     V  +SI+ VVLPLPGH++K+P + +G      L  DG+D   L  H      + + L G+YRHVV +P
Sbjct:  545 EKSAKRQPIQETVELTEDNVDQYSIEDVVLPLPGHAIKYPTNEIGTAYRKMLTTDGID---LNAHFGPDGSQAYILDGSYRHVVKKP 628          
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Match: A0A7M7MZ56_STRPU (TRUD domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7MZ56_STRPU)

HSP 1 Score: 54.7 bits (130), Expect = 2.270e-5
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 3
Query:  108 VRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDVILEGHPQKQFDLAGAYRHVVVRP 305
            V    FSI  VVLPLPGH VK+P H  GE     L +D +   +L+ +  +   L+GAYR  VV+P
Sbjct:  176 VNQNEFSIYDVVLPLPGHGVKYPTHKAGEWYTEELAKDDLTVEMLK-NTNRDLSLSGAYRKCVVKP 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11615.1426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JSV0_9PHAE1.580e-2968.09TRUD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FYR3_ECTSI3.890e-2972.63Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A836CLL9_9STRA3.100e-840.86TRUD domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2N074_9EUKA2.480e-741.67Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
UPI001652067B1.850e-647.54pseudouridylate synthase 7 homolog n=1 Tax=Aplysia... [more]
A0A225WC41_9STRA1.110e-541.77Pseudouridylate synthase n=1 Tax=Phytophthora mega... [more]
UPI001BB176DB1.190e-544.26pseudouridylate synthase 7 homolog n=1 Tax=Lytechi... [more]
H3GXX2_PHYRM1.520e-540.51TRUD domain-containing protein n=1 Tax=Phytophthor... [more]
M4BIJ7_HYAAE2.030e-537.93TRUD domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A7M7MZ56_STRPU2.270e-543.94TRUD domain-containing protein n=1 Tax=Strongyloce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11615contigH-canaliculatus_F_contig11615:2288..3451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue6.5e-25
Seed eggNOG ortholog2880.D7FYR3
KEGG koko:K06176
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0585@1,KOG2339@2759
EC5.4.99.27
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size702
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11615.1426.1prot_H-canaliculatus_F_contig11615.1426.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11615 2374..3102 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928853.6910303-UTR-H-canaliculatus_F_contig11615:2287..23731622928853.6910303-UTR-H-canaliculatus_F_contig11615:2287..2373Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11615 2288..2373 +
1696845589.4642184-UTR-H-canaliculatus_F_contig11615:2287..23731696845589.4642184-UTR-H-canaliculatus_F_contig11615:2287..2373Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11615 2288..2373 +
1622928853.771354-UTR-H-canaliculatus_F_contig11615:3102..34511622928853.771354-UTR-H-canaliculatus_F_contig11615:3102..3451Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11615 3103..3451 +
1696845589.5050642-UTR-H-canaliculatus_F_contig11615:3102..34511696845589.5050642-UTR-H-canaliculatus_F_contig11615:3102..3451Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11615 3103..3451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928853.7139826-CDS-H-canaliculatus_F_contig11615:2373..24431622928853.7139826-CDS-H-canaliculatus_F_contig11615:2373..2443Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 2374..2443 +
1696845589.487402-CDS-H-canaliculatus_F_contig11615:2373..24431696845589.487402-CDS-H-canaliculatus_F_contig11615:2373..2443Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 2374..2443 +
1622928853.72938-CDS-H-canaliculatus_F_contig11615:2905..31021622928853.72938-CDS-H-canaliculatus_F_contig11615:2905..3102Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 2906..3102 +
1696845589.4964652-CDS-H-canaliculatus_F_contig11615:2905..31021696845589.4964652-CDS-H-canaliculatus_F_contig11615:2905..3102Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 2906..3102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11615.1426.1

>prot_H-canaliculatus_F_contig11615.1426.1 ID=prot_H-canaliculatus_F_contig11615.1426.1|Name=mRNA_H-canaliculatus_F_contig11615.1426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
MRVTAEAVRAGVFSIKHVVLPLPGHSVKFPLHSVGEEMLASLKQDGVDDV
ILEGHPQKQFDLAGAYRHVVVRPAAQNVPPTASPPPAS*
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mRNA from alignment at H-canaliculatus_F_contig11615:2288..3451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11615.1426.1 ID=mRNA_H-canaliculatus_F_contig11615.1426.1|Name=mRNA_H-canaliculatus_F_contig11615.1426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11615:2288..3451+ (Hapterophycus canaliculatus Oshoro5f female)
GGAGAGGCGGAAGGGGGGCCGGGGGCGACCGCCGTCGGCGCCGTGGAGGC GGGAGACAGGAGGAGGCGGAGGCGAAGGTTGAGGTCATGAGGGTAACGGC GGAGGCTGTTCGCGCGGGAGTTTTCAGCATCAAGCACGTTGTCCTTCCTC TCCCAGGTAAACATTCGCCCCACGAAAGGTGCATTCTGTGTTGTTTGGCT GGATGATCAAGGGCTATCTGCGCCGACCCCCCCCCCCCATTTAGTTTTCG GGACATCTTGGTCGCGGGTGGCGATGACGCCGCTCCCAGCTTGTCCATGA CGTGCAGATGCCCATGGAAGGGGGAGACTCGGCGGAAGAGAGGCAGAGAC AGAGATCCCAAGACACAACGGCGCGCGGACACACGGGACACACAAGAGAC AACGCGCACGAAACTTGGTCACCCCCGCGTGCACGCGTACCACATGCACG TAGTGTCCGTCGCTGGCGGTGACGAAGCGACCAAAATCAAATGCTCGCGA CCTGTGGGTGAGTGCACACCCGTCCATAGTGCGTCCGTTATCGGCTCCTA TCCCTCACCCCAGGTGACCCCCACGACCCCCACCACCGCCAACCCCGTCG CCCCCCCCCCCACCTCAGGGCATTCCGTCAAGTTTCCTTTGCACTCCGTC GGAGAGGAGATGCTGGCGTCTCTCAAGCAGGACGGGGTGGACGATGTGAT CCTGGAGGGACACCCCCAGAAGCAGTTCGACCTGGCGGGGGCTTACCGCC ACGTCGTGGTGCGTCCTGCCGCACAAAACGTCCCGCCCACCGCCTCACCA CCTCCGGCCTCTTGACGTACGCGGGCAGCGCGGGCCTACGCTGCGAAGTC AGCCGACTGTACACACCGCCTACGTAAGACTGTCTCCTCTGACAGCGTCT GCTGTCCTTTTCGTCTCCGACGCAGGTACCGCGCTGGCACGAACTCGGCC GTTTTCGCCCCTTGCCTCGGCAGTCCGTCGTGCCTCCTCTCTGTCCACGT TCTTCCGTTCGCCGCCCGGGCCGCGCGCGGCGCGTACGAGCACGTCCACA CCTCTCCTCGGCGCCTGTTCACGTCCGCTCGTCATTTTTTGCCCACGAAC AACTTTCCCTCGCCGTGTGCGCGCGTCTGTCCGTGCGGGTAGAGCGACAC AAACCTCTGACTAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11615:2288..3451+

>mRNA_H-canaliculatus_F_contig11615.1426.1 ID=mRNA_H-canaliculatus_F_contig11615.1426.1|Name=mRNA_H-canaliculatus_F_contig11615.1426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11615:2288..3451+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGGTAACGGCGGAGGCTGTTCGCGCGGGAGTTTTCAGCATCAAGCA
CGTTGTCCTTCCTCTCCCAGATGAGGGTAACGGCGGAGGCTGTTCGCGCG
GGAGTTTTCAGCATCAAGCACGTTGTCCTTCCTCTCCCAGGGCATTCCGT
CAAGTTTCCTTTGCACTCCGTCGGAGAGGAGATGCTGGCGTCTCTCAAGC
AGGACGGGGTGGACGATGTGATCCTGGAGGGACACCCCCAGAAGCAGTTC
GACCTGGCGGGGGCTTACCGCCACGTCGTGGTGCGTCCTGCCGCACAAAA
CGTCCCGCCCACCGCCTCACCACCTCCGGCCTCTTGAGGCATTCCGTCAA
GTTTCCTTTGCACTCCGTCGGAGAGGAGATGCTGGCGTCTCTCAAGCAGG
ACGGGGTGGACGATGTGATCCTGGAGGGACACCCCCAGAAGCAGTTCGAC
CTGGCGGGGGCTTACCGCCACGTCGTGGTGCGTCCTGCCGCACAAAACGT
CCCGCCCACCGCCTCACCACCTCCGGCCTCTTGA
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