mRNA_H-canaliculatus_F_contig11407.1243.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: D7FS57_ECTSI (Chloride channel protein EriC n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS57_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 2.160e-161 Identity = 253/261 (96.93%), Postives = 255/261 (97.70%), Query Frame = 1 Query: 1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQ 783 P RTLGKTLAAVATLGTGNSLGPEGPAVELGVASSR+VSAMS LSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPA YNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKS+DVFKGNFPGFGWMK PQWSKPIMMAAVTG VGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQ Sbjct: 227 PRRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRWVSAMSKLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAEYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSADVFKGNFPGFGWMKKAPQWSKPIMMAAVTGTVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQ 487
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A836CI00_9STRA (Chloride channel (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI00_9STRA) HSP 1 Score: 322 bits (824), Expect = 2.400e-103 Identity = 174/262 (66.41%), Postives = 204/262 (77.86%), Query Frame = 1 Query: 1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYN----SKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQR 774 PLR LGK AA+ TLGTGNSLGPEGPAVELGVA SR V A +LSV+RQR LLGAGAAAGVAAGFNAPIAG+FF+LEIV D+ + SKS +A+TLLCA ++AL+A++GLH+E +L PA YNL SPL+ELPLYLGLG +G+VA+MFK+F KS DVF G GF +M+DVP KP++ AA TG VG++FPQ+LFFGY+TL LLANTG Y L LC+ KA TA GSGLVGGTFAPSLFLGATAGA YQR Sbjct: 95 PLRALGKACAAILTLGTGNSLGPEGPAVELGVACSRIVCAWRDLSVERQRTLLGAGAAAGVAAGFNAPIAGVFFSLEIVGDSLAADAGAAALSKSAVASTLLCAALAALVARLGLHEEYALHPAPYNLASPLVELPLYLGLGFCSGIVAIMFKWFLEKSKDVFDGTQLGFAFMRDVPAGVKPLIGAAFTGFVGLWFPQILFFGYETLTSLLANTGRYGTLQLLQLCILKAATTAACFGSGLVGGTFAPSLFLGATAGAFYQR 356
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A836C8J5_9STRA (Chloride channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J5_9STRA) HSP 1 Score: 306 bits (783), Expect = 6.920e-95 Identity = 168/260 (64.62%), Postives = 198/260 (76.15%), Query Frame = 1 Query: 1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYN--SKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQR 774 P R++GK LAAVATLGTGNSLGPEGPAVELGVA SR V A LS+ RQR LLGAGAAAG G+FF+LEIV D+ SKS IAATLL A ++AL+A++GLH+E +LRPA YNL SP++ELPLYLGLG +GLVA MFKYF +S DVF+G GF +M DVP+W+KP++ AA+TGA+G+ FPQ+LFFGY TLD LLANTG Y L LCV KA++TA GSGLVGGTFAP+LFLGATAGA YQR Sbjct: 262 PGRSIGKALAAVATLGTGNSLGPEGPAVELGVACSRMVCAWKELSIDRQRTLLGAGAAAG----------GVFFSLEIVGDSLADAAATLSKSSIAATLLSAALAALVARLGLHEEYALRPAPYNLASPILELPLYLGLGFCSGLVACMFKYFMSRSKDVFQGKQAGFKFMSDVPEWTKPLIGAALTGAIGIVFPQILFFGYQTLDTLLANTGRYGALQLARLCVVKAVMTAVCFGSGLVGGTFAPALFLGATAGACYQR 511
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A4D9CYP4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYP4_9STRA) HSP 1 Score: 251 bits (640), Expect = 1.580e-74 Identity = 154/271 (56.83%), Postives = 193/271 (71.22%), Query Frame = 1 Query: 7 RTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVK---------DTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGN--FPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQV 786 R + K+LAAVATLGTG SLGPEGPAVELGV +SR V+ ++L QR+++LL AGAAAGVAAGFNAPIAG+FFALEI KS +A+ LL AVVSAL+A++GL +EL+LRPA Y L SPL+ELP YLGLGV++GLVA+ F+Y ++ F G +P + +M VP+ KP++ A+ G G+ FPQ+LFFGY+TLD L+AN SY LL L KA +TA L SGLVGG FAPSLFLGATAGAAYQ++L + Sbjct: 92 RAVLKSLAAVATLGTGCSLGPEGPAVELGVVASRLVTLKASLE-QRKQLLL-AGAAAGVAAGFNAPIAGVFFALEIASAQGXXXXXXXXXXXXXLQKSTLASILLAAVVSALVARVGLKEELALRPAPYLLSSPLVELPGYLGLGVLSGLVALSFRYLCGEAEHFFTGTTRWPAWNFMGRVPRAFKPMLGGALCGLTGILFPQILFFGYETLDGLIANQ-SYPALLLLGLLALKAGMTALCLASGLVGGLFAPSLFLGATAGAAYQKLLNL 359
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A0G4GMH1_VITBC (Chloride channel protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GMH1_VITBC) HSP 1 Score: 247 bits (630), Expect = 1.410e-72 Identity = 148/266 (55.64%), Postives = 190/266 (71.43%), Query Frame = 1 Query: 7 RTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELS-LRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLL--ANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQVGAE 795 + L K+ A VATLGTG SLGPEGPAVELGV+ SR VS ++S+ R+R LL AGAAAGVAAGFNAP+AG+FFALEIV + ++ IA T+LCAVVSAL A+IGL + L+ + P +Y+L +PL+ELPLY+GLG V+G V+++FK + F+G F WM+ VP+ KP++ + G VG +FPQVLF Y TLDK+L A+ + SL LL FL K ++TA + GSGLVGGTFAPSLFLGA AGAAYQ++L E Sbjct: 239 KQLAKSGAGVATLGTGCSLGPEGPAVELGVSCSRLVSQFFSMSLDRRRQLLSAGAAAGVAAGFNAPVAGVFFALEIVTAAKDNVGVPRTSIAGTVLCAVVSALTARIGLAETLAFVPPPSYSLLNPLVELPLYVGLGAVSGAVSILFKRALESAELAFEGAVSRFKWMQRVPRILKPVIGGLLCGVVGFWFPQVLFSQYGTLDKVLTSASDPASSLILLLFL---KMVMTAISAGSGLVGGTFAPSLFLGAVAGAAYQKVLAPATE 501
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A1Z4JFN5_LEPBY (Chloride channel protein n=5 Tax=Leptolyngbya TaxID=47251 RepID=A0A1Z4JFN5_LEPBY) HSP 1 Score: 220 bits (561), Expect = 5.230e-64 Identity = 134/261 (51.34%), Postives = 177/261 (67.82%), Query Frame = 1 Query: 1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDT-FNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRIL 780 P R + KT+AA +LGTG SLGPEGP+VE+G V +S RQR+LLGAGAAAG+AAGFNAPIAG+FFALE+V T F T S + LL AVVSAL+A+IGL + + AY + SPL ELPLYLGLG+ A +V++ + + +SDVF+G PG WM +P+ ++PI+ G V + PQ+L GYDT++ +L + +SL LL L V K L+TA +LGSGL+GG FAP++FLGAT GAAY ++L Sbjct: 122 PTRPIIKTVAAAVSLGTGASLGPEGPSVEVGANFGLLVGQSLKVSRDRQRLLLGAGAAAGLAAGFNAPIAGVFFALEVVLGTTFET-----SAASIVLLSAVVSALIAQIGLGGQPAFALPAYEVRSPL-ELPLYLGLGLFACVVSIAYTTSLKWASDVFQGKIPGTVWMAKIPREAQPILGGLCVGLVALKLPQILGVGYDTVEAMLRDV-QFSLLLLMTLLVVKLLMTAVSLGSGLIGGMFAPAMFLGATLGAAYGKVL 375
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: UPI0016880AAC (chloride channel protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI0016880AAC) HSP 1 Score: 219 bits (558), Expect = 1.680e-63 Identity = 130/260 (50.00%), Postives = 173/260 (66.54%), Query Frame = 1 Query: 4 LRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDT-FNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRIL 780 LR GK +AA +LGTG SLGPEGP+VE+G V +S +RQR+LLGAGAAAG+AAGFNAPIAG+FFALE+V T F T S ++ LL AVV+AL+A+IGL + +Y + SPL ELPLYLGLG+ A LV++ + +++ F G PG GWM VP +P + GA+ + FPQ+L GY+T++ +L + +SLPLL L V K TA +LGSGLVGG FAP++FLGA+ GAAY +++ Sbjct: 128 LRASGKAVAASVSLGTGASLGPEGPSVEIGANIGVIVGQALQMSKERQRLLLGAGAAAGLAAGFNAPIAGVFFALEVVLGTTFAT-----SAVSVVLLSAVVAALIAQIGLGGQPPFTLPSYEVRSPL-ELPLYLGLGLFASLVSIAYTQSIQRAQQFFDGRIPGMGWMSRVPMLLRPAIGGLCVGAIALQFPQILGIGYETIEAMLRDV-QFSLPLLLSLLVLKLAATAISLGSGLVGGLFAPAMFLGASLGAAYGKLM 380
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: B8C337_THAPS (Chloride channel protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C337_THAPS) HSP 1 Score: 209 bits (533), Expect = 3.300e-63 Identity = 125/261 (47.89%), Postives = 174/261 (66.67%), Query Frame = 1 Query: 19 KTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMS--NLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNF-PGF--GWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQV 786 K LAA TLGTGNSLGPEGP+VE G++ + ++ + N + R R+LL GAAAGV+AGFNAP++G+FFALEIV++ F N I+A LL +VVSAL ++ L ELSLR +++ ++PL+ELPLYL LG ++G+VA +F ++ S VF G P + +P+++KP++ + + G VG++ PQVLFFGY+TL+ L N S P L L +AK + TA + SGLVGGTFAPSLFLG GA + I + Sbjct: 6 KALAATVTLGTGNSLGPEGPSVEAGMSLNYEMTEVQRVNRKMARDRLLLACGAAAGVSAGFNAPLSGVFFALEIVQNAFQIN------ISAILLASVVSALTIQLLLGSELSLRLGSFDFKNPLLELPLYLLLGAMSGVVAAIFSGVAQYSKTVFDGEEGPEIVQETFRQIPKYAKPLIASLICGVVGIYVPQVLFFGYETLNGLFLNN-DISTPYLFLLLIAKLMTTAISASSGLVGGTFAPSLFLGGVLGAVFHNIYPI 259
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A3S0Y2N1_CHLFR (Chloride channel protein n=2 Tax=Chlorogloeopsis fritschii TaxID=1124 RepID=A0A3S0Y2N1_CHLFR) HSP 1 Score: 217 bits (552), Expect = 9.520e-63 Identity = 126/259 (48.65%), Postives = 178/259 (68.73%), Query Frame = 1 Query: 4 LRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRIL 780 LR + K +AA +LG+G+SLGPEGP+VE+G + +S + +S +RQR+LLGAGAAAG+AAGFNAPIAG+FFALE+V T++ + S ++ LL AVV+AL+A+IGL + + Y + SPL ELPLYLGLG+ A LV++ + R F G PGF W+ +P+ PI+ A+ GAV ++ PQ+L GY+T++ +L + +SL LL L VAK +TA + GSG VGG FAP++FLGA+ G+AY +IL Sbjct: 125 LRPVTKMIAAAVSLGSGSSLGPEGPSVEIGASFGMLLSVVLQVSRERQRLLLGAGAAAGLAAGFNAPIAGVFFALEVVLGA--TSF-ATSAVSVVLLAAVVAALIAQIGLGAQPAFTLPVYQVRSPL-ELPLYLGLGLWASLVSLTYTQSIRLLKATFAGKVPGFAWLGKIPKPIHPILGGAIVGAVALYLPQILGIGYETVEAMLQDV-EFSLQLLLLLLVAKLAMTAISAGSGFVGGVFAPAMFLGASLGSAYAKIL 378
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A2T1EGK2_9CYAN (Chloride channel protein n=1 Tax=Stenomitos frigidus ULC18 TaxID=2107698 RepID=A0A2T1EGK2_9CYAN) HSP 1 Score: 216 bits (551), Expect = 1.510e-62 Identity = 128/263 (48.67%), Postives = 175/263 (66.54%), Query Frame = 1 Query: 1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKD-TFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQV 786 PLR K +AA +LG+G SLGPEGP+VE+G + +S +RQR+LLGAGAAAG+AAGFNAPIAG+FFALE+V TF T S ++ LL AVV+AL+A+IGL + +Y + SPL ELPLYLGLG+ A LV++ + + + +F G+ PG WM VP +P++ G V + FPQVL GY+T++ +L + +SLPLL L V K +TA +LGSGLVGG FAP++FLGA+ GAAY +++ + Sbjct: 124 PLRASAKAVAASVSLGSGASLGPEGPSVEIGANIGVVIGQALQMSKERQRLLLGAGAAAGLAAGFNAPIAGVFFALEVVLGATFAT-----SAVSVVLLSAVVAALIAQIGLGGQPPFTLPSYEVRSPL-ELPLYLGLGLFASLVSIAYTQSIQTAQQLFDGHTPGLSWMGQVPVALRPVIGGLCVGLVALQFPQVLGIGYETVEAMLRDV-EFSLPLLLSLLVTKLAMTAVSLGSGLVGGLFAPAMFLGASLGAAYGKVMAI 379 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11407.1243.1 >prot_H-canaliculatus_F_contig11407.1243.1 ID=prot_H-canaliculatus_F_contig11407.1243.1|Name=mRNA_H-canaliculatus_F_contig11407.1243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=266bp PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRback to top mRNA from alignment at H-canaliculatus_F_contig11407:951..4029- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11407.1243.1 ID=mRNA_H-canaliculatus_F_contig11407.1243.1|Name=mRNA_H-canaliculatus_F_contig11407.1243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3079bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11407:951..4029- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11407:951..4029- >mRNA_H-canaliculatus_F_contig11407.1243.1 ID=mRNA_H-canaliculatus_F_contig11407.1243.1|Name=mRNA_H-canaliculatus_F_contig11407.1243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1596bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11407:951..4029- (Hapterophycus canaliculatus Oshoro5f female)back to top |