mRNA_H-canaliculatus_F_contig11407.1243.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11407.1243.1
Unique NamemRNA_H-canaliculatus_F_contig11407.1243.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: D7FS57_ECTSI (Chloride channel protein EriC n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS57_ECTSI)

HSP 1 Score: 481 bits (1237), Expect = 2.160e-161
Identity = 253/261 (96.93%), Postives = 255/261 (97.70%), Query Frame = 1
Query:    1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQ 783
            P RTLGKTLAAVATLGTGNSLGPEGPAVELGVASSR+VSAMS LSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPA YNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKS+DVFKGNFPGFGWMK  PQWSKPIMMAAVTG VGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQ
Sbjct:  227 PRRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRWVSAMSKLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAEYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSADVFKGNFPGFGWMKKAPQWSKPIMMAAVTGTVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQ 487          
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A836CI00_9STRA (Chloride channel (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI00_9STRA)

HSP 1 Score: 322 bits (824), Expect = 2.400e-103
Identity = 174/262 (66.41%), Postives = 204/262 (77.86%), Query Frame = 1
Query:    1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYN----SKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQR 774
            PLR LGK  AA+ TLGTGNSLGPEGPAVELGVA SR V A  +LSV+RQR LLGAGAAAGVAAGFNAPIAG+FF+LEIV D+   +      SKS +A+TLLCA ++AL+A++GLH+E +L PA YNL SPL+ELPLYLGLG  +G+VA+MFK+F  KS DVF G   GF +M+DVP   KP++ AA TG VG++FPQ+LFFGY+TL  LLANTG Y    L  LC+ KA  TA   GSGLVGGTFAPSLFLGATAGA YQR
Sbjct:   95 PLRALGKACAAILTLGTGNSLGPEGPAVELGVACSRIVCAWRDLSVERQRTLLGAGAAAGVAAGFNAPIAGVFFSLEIVGDSLAADAGAAALSKSAVASTLLCAALAALVARLGLHEEYALHPAPYNLASPLVELPLYLGLGFCSGIVAIMFKWFLEKSKDVFDGTQLGFAFMRDVPAGVKPLIGAAFTGFVGLWFPQILFFGYETLTSLLANTGRYGTLQLLQLCILKAATTAACFGSGLVGGTFAPSLFLGATAGAFYQR 356          
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A836C8J5_9STRA (Chloride channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J5_9STRA)

HSP 1 Score: 306 bits (783), Expect = 6.920e-95
Identity = 168/260 (64.62%), Postives = 198/260 (76.15%), Query Frame = 1
Query:    1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYN--SKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQR 774
            P R++GK LAAVATLGTGNSLGPEGPAVELGVA SR V A   LS+ RQR LLGAGAAAG          G+FF+LEIV D+        SKS IAATLL A ++AL+A++GLH+E +LRPA YNL SP++ELPLYLGLG  +GLVA MFKYF  +S DVF+G   GF +M DVP+W+KP++ AA+TGA+G+ FPQ+LFFGY TLD LLANTG Y    L  LCV KA++TA   GSGLVGGTFAP+LFLGATAGA YQR
Sbjct:  262 PGRSIGKALAAVATLGTGNSLGPEGPAVELGVACSRMVCAWKELSIDRQRTLLGAGAAAG----------GVFFSLEIVGDSLADAAATLSKSSIAATLLSAALAALVARLGLHEEYALRPAPYNLASPILELPLYLGLGFCSGLVACMFKYFMSRSKDVFQGKQAGFKFMSDVPEWTKPLIGAALTGAIGIVFPQILFFGYQTLDTLLANTGRYGALQLARLCVVKAVMTAVCFGSGLVGGTFAPALFLGATAGACYQR 511          
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A4D9CYP4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYP4_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.580e-74
Identity = 154/271 (56.83%), Postives = 193/271 (71.22%), Query Frame = 1
Query:    7 RTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVK---------DTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGN--FPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQV 786
            R + K+LAAVATLGTG SLGPEGPAVELGV +SR V+  ++L  QR+++LL AGAAAGVAAGFNAPIAG+FFALEI                    KS +A+ LL AVVSAL+A++GL +EL+LRPA Y L SPL+ELP YLGLGV++GLVA+ F+Y   ++   F G   +P + +M  VP+  KP++  A+ G  G+ FPQ+LFFGY+TLD L+AN  SY   LL  L   KA +TA  L SGLVGG FAPSLFLGATAGAAYQ++L +
Sbjct:   92 RAVLKSLAAVATLGTGCSLGPEGPAVELGVVASRLVTLKASLE-QRKQLLL-AGAAAGVAAGFNAPIAGVFFALEIASAQGXXXXXXXXXXXXXLQKSTLASILLAAVVSALVARVGLKEELALRPAPYLLSSPLVELPGYLGLGVLSGLVALSFRYLCGEAEHFFTGTTRWPAWNFMGRVPRAFKPMLGGALCGLTGILFPQILFFGYETLDGLIANQ-SYPALLLLGLLALKAGMTALCLASGLVGGLFAPSLFLGATAGAAYQKLLNL 359          
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A0G4GMH1_VITBC (Chloride channel protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GMH1_VITBC)

HSP 1 Score: 247 bits (630), Expect = 1.410e-72
Identity = 148/266 (55.64%), Postives = 190/266 (71.43%), Query Frame = 1
Query:    7 RTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELS-LRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLL--ANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQVGAE 795
            + L K+ A VATLGTG SLGPEGPAVELGV+ SR VS   ++S+ R+R LL AGAAAGVAAGFNAP+AG+FFALEIV    +     ++ IA T+LCAVVSAL A+IGL + L+ + P +Y+L +PL+ELPLY+GLG V+G V+++FK     +   F+G    F WM+ VP+  KP++   + G VG +FPQVLF  Y TLDK+L  A+  + SL LL FL   K ++TA + GSGLVGGTFAPSLFLGA AGAAYQ++L    E
Sbjct:  239 KQLAKSGAGVATLGTGCSLGPEGPAVELGVSCSRLVSQFFSMSLDRRRQLLSAGAAAGVAAGFNAPVAGVFFALEIVTAAKDNVGVPRTSIAGTVLCAVVSALTARIGLAETLAFVPPPSYSLLNPLVELPLYVGLGAVSGAVSILFKRALESAELAFEGAVSRFKWMQRVPRILKPVIGGLLCGVVGFWFPQVLFSQYGTLDKVLTSASDPASSLILLLFL---KMVMTAISAGSGLVGGTFAPSLFLGAVAGAAYQKVLAPATE 501          
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A1Z4JFN5_LEPBY (Chloride channel protein n=5 Tax=Leptolyngbya TaxID=47251 RepID=A0A1Z4JFN5_LEPBY)

HSP 1 Score: 220 bits (561), Expect = 5.230e-64
Identity = 134/261 (51.34%), Postives = 177/261 (67.82%), Query Frame = 1
Query:    1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDT-FNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRIL 780
            P R + KT+AA  +LGTG SLGPEGP+VE+G      V     +S  RQR+LLGAGAAAG+AAGFNAPIAG+FFALE+V  T F T     S  +  LL AVVSAL+A+IGL  + +    AY + SPL ELPLYLGLG+ A +V++ +    + +SDVF+G  PG  WM  +P+ ++PI+     G V +  PQ+L  GYDT++ +L +   +SL LL  L V K L+TA +LGSGL+GG FAP++FLGAT GAAY ++L
Sbjct:  122 PTRPIIKTVAAAVSLGTGASLGPEGPSVEVGANFGLLVGQSLKVSRDRQRLLLGAGAAAGLAAGFNAPIAGVFFALEVVLGTTFET-----SAASIVLLSAVVSALIAQIGLGGQPAFALPAYEVRSPL-ELPLYLGLGLFACVVSIAYTTSLKWASDVFQGKIPGTVWMAKIPREAQPILGGLCVGLVALKLPQILGVGYDTVEAMLRDV-QFSLLLLMTLLVVKLLMTAVSLGSGLIGGMFAPAMFLGATLGAAYGKVL 375          
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: UPI0016880AAC (chloride channel protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI0016880AAC)

HSP 1 Score: 219 bits (558), Expect = 1.680e-63
Identity = 130/260 (50.00%), Postives = 173/260 (66.54%), Query Frame = 1
Query:    4 LRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDT-FNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRIL 780
            LR  GK +AA  +LGTG SLGPEGP+VE+G      V     +S +RQR+LLGAGAAAG+AAGFNAPIAG+FFALE+V  T F T     S ++  LL AVV+AL+A+IGL  +      +Y + SPL ELPLYLGLG+ A LV++ +    +++   F G  PG GWM  VP   +P +     GA+ + FPQ+L  GY+T++ +L +   +SLPLL  L V K   TA +LGSGLVGG FAP++FLGA+ GAAY +++
Sbjct:  128 LRASGKAVAASVSLGTGASLGPEGPSVEIGANIGVIVGQALQMSKERQRLLLGAGAAAGLAAGFNAPIAGVFFALEVVLGTTFAT-----SAVSVVLLSAVVAALIAQIGLGGQPPFTLPSYEVRSPL-ELPLYLGLGLFASLVSIAYTQSIQRAQQFFDGRIPGMGWMSRVPMLLRPAIGGLCVGAIALQFPQILGIGYETIEAMLRDV-QFSLPLLLSLLVLKLAATAISLGSGLVGGLFAPAMFLGASLGAAYGKLM 380          
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: B8C337_THAPS (Chloride channel protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C337_THAPS)

HSP 1 Score: 209 bits (533), Expect = 3.300e-63
Identity = 125/261 (47.89%), Postives = 174/261 (66.67%), Query Frame = 1
Query:   19 KTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMS--NLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNF-PGF--GWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQV 786
            K LAA  TLGTGNSLGPEGP+VE G++ +  ++ +   N  + R R+LL  GAAAGV+AGFNAP++G+FFALEIV++ F  N      I+A LL +VVSAL  ++ L  ELSLR  +++ ++PL+ELPLYL LG ++G+VA +F   ++ S  VF G   P       + +P+++KP++ + + G VG++ PQVLFFGY+TL+ L  N    S P L  L +AK + TA +  SGLVGGTFAPSLFLG   GA +  I  +
Sbjct:    6 KALAATVTLGTGNSLGPEGPSVEAGMSLNYEMTEVQRVNRKMARDRLLLACGAAAGVSAGFNAPLSGVFFALEIVQNAFQIN------ISAILLASVVSALTIQLLLGSELSLRLGSFDFKNPLLELPLYLLLGAMSGVVAAIFSGVAQYSKTVFDGEEGPEIVQETFRQIPKYAKPLIASLICGVVGIYVPQVLFFGYETLNGLFLNN-DISTPYLFLLLIAKLMTTAISASSGLVGGTFAPSLFLGGVLGAVFHNIYPI 259          
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A3S0Y2N1_CHLFR (Chloride channel protein n=2 Tax=Chlorogloeopsis fritschii TaxID=1124 RepID=A0A3S0Y2N1_CHLFR)

HSP 1 Score: 217 bits (552), Expect = 9.520e-63
Identity = 126/259 (48.65%), Postives = 178/259 (68.73%), Query Frame = 1
Query:    4 LRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRIL 780
            LR + K +AA  +LG+G+SLGPEGP+VE+G +    +S +  +S +RQR+LLGAGAAAG+AAGFNAPIAG+FFALE+V     T++ + S ++  LL AVV+AL+A+IGL  + +     Y + SPL ELPLYLGLG+ A LV++ +    R     F G  PGF W+  +P+   PI+  A+ GAV ++ PQ+L  GY+T++ +L +   +SL LL  L VAK  +TA + GSG VGG FAP++FLGA+ G+AY +IL
Sbjct:  125 LRPVTKMIAAAVSLGSGSSLGPEGPSVEIGASFGMLLSVVLQVSRERQRLLLGAGAAAGLAAGFNAPIAGVFFALEVVLGA--TSF-ATSAVSVVLLAAVVAALIAQIGLGAQPAFTLPVYQVRSPL-ELPLYLGLGLWASLVSLTYTQSIRLLKATFAGKVPGFAWLGKIPKPIHPILGGAIVGAVALYLPQILGIGYETVEAMLQDV-EFSLQLLLLLLVAKLAMTAISAGSGFVGGVFAPAMFLGASLGSAYAKIL 378          
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Match: A0A2T1EGK2_9CYAN (Chloride channel protein n=1 Tax=Stenomitos frigidus ULC18 TaxID=2107698 RepID=A0A2T1EGK2_9CYAN)

HSP 1 Score: 216 bits (551), Expect = 1.510e-62
Identity = 128/263 (48.67%), Postives = 175/263 (66.54%), Query Frame = 1
Query:    1 PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQRMLLGAGAAAGVAAGFNAPIAGIFFALEIVKD-TFNTNYNSKSFIAATLLCAVVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKYFSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGYDTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGATAGAAYQRILQV 786
            PLR   K +AA  +LG+G SLGPEGP+VE+G      +     +S +RQR+LLGAGAAAG+AAGFNAPIAG+FFALE+V   TF T     S ++  LL AVV+AL+A+IGL  +      +Y + SPL ELPLYLGLG+ A LV++ +    + +  +F G+ PG  WM  VP   +P++     G V + FPQVL  GY+T++ +L +   +SLPLL  L V K  +TA +LGSGLVGG FAP++FLGA+ GAAY +++ +
Sbjct:  124 PLRASAKAVAASVSLGSGASLGPEGPSVEIGANIGVVIGQALQMSKERQRLLLGAGAAAGLAAGFNAPIAGVFFALEVVLGATFAT-----SAVSVVLLSAVVAALIAQIGLGGQPPFTLPSYEVRSPL-ELPLYLGLGLFASLVSIAYTQSIQTAQQLFDGHTPGLSWMGQVPVALRPVIGGLCVGLVALQFPQVLGIGYETVEAMLRDV-EFSLPLLLSLLVTKLAMTAVSLGSGLVGGLFAPAMFLGASLGAAYGKVMAI 379          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11407.1243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS57_ECTSI2.160e-16196.93Chloride channel protein EriC n=2 Tax=Ectocarpus T... [more]
A0A836CI00_9STRA2.400e-10366.41Chloride channel (Fragment) n=1 Tax=Tribonema minu... [more]
A0A836C8J5_9STRA6.920e-9564.62Chloride channel n=1 Tax=Tribonema minus TaxID=303... [more]
A0A4D9CYP4_9STRA1.580e-7456.83Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0G4GMH1_VITBC1.410e-7255.64Chloride channel protein n=2 Tax=Vitrella brassica... [more]
A0A1Z4JFN5_LEPBY5.230e-6451.34Chloride channel protein n=5 Tax=Leptolyngbya TaxI... [more]
UPI0016880AAC1.680e-6350.00chloride channel protein n=2 Tax=Cyanobacteria Tax... [more]
B8C337_THAPS3.300e-6347.89Chloride channel protein (Fragment) n=1 Tax=Thalas... [more]
A0A3S0Y2N1_CHLFR9.520e-6348.65Chloride channel protein n=2 Tax=Chlorogloeopsis f... [more]
A0A2T1EGK2_9CYAN1.510e-6248.67Chloride channel protein n=1 Tax=Stenomitos frigid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11407contigH-canaliculatus_F_contig11407:951..4029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score482.6
Seed ortholog evalue1.1e-133
Seed eggNOG ortholog2880.D7FS57
KEGG rclassRC00311,RC00313
KEGG koko:K01637
KEGG ReactionR00479
KEGG Pathwayko00630,ko01100,ko01110,ko01120,ko01200,map00630,map01100,map01110,map01120,map01200
KEGG ModuleM00012
EggNOG free text desc.voltage-gated chloride channel activity
EggNOG OGsCOG0038@1,KOG0475@2759
EC4.1.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChloride channel protein EriC
Ec32 orthologEc-01_000640.1
Exons5
Model size798
Cds size798
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11407.1243.1prot_H-canaliculatus_F_contig11407.1243.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11407 951..4029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928824.6599953-CDS-H-canaliculatus_F_contig11407:950..10731622928824.6599953-CDS-H-canaliculatus_F_contig11407:950..1073Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 951..1073 -
1696845579.2560446-CDS-H-canaliculatus_F_contig11407:950..10731696845579.2560446-CDS-H-canaliculatus_F_contig11407:950..1073Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 951..1073 -
1622928824.6762078-CDS-H-canaliculatus_F_contig11407:1617..17101622928824.6762078-CDS-H-canaliculatus_F_contig11407:1617..1710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 1618..1710 -
1696845579.26785-CDS-H-canaliculatus_F_contig11407:1617..17101696845579.26785-CDS-H-canaliculatus_F_contig11407:1617..1710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 1618..1710 -
1622928824.6920822-CDS-H-canaliculatus_F_contig11407:2320..24401622928824.6920822-CDS-H-canaliculatus_F_contig11407:2320..2440Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 2321..2440 -
1696845579.276515-CDS-H-canaliculatus_F_contig11407:2320..24401696845579.276515-CDS-H-canaliculatus_F_contig11407:2320..2440Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 2321..2440 -
1622928824.710532-CDS-H-canaliculatus_F_contig11407:3132..33541622928824.710532-CDS-H-canaliculatus_F_contig11407:3132..3354Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 3133..3354 -
1696845579.287808-CDS-H-canaliculatus_F_contig11407:3132..33541696845579.287808-CDS-H-canaliculatus_F_contig11407:3132..3354Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 3133..3354 -
1622928824.721341-CDS-H-canaliculatus_F_contig11407:3789..40291622928824.721341-CDS-H-canaliculatus_F_contig11407:3789..4029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 3790..4029 -
1696845579.2985015-CDS-H-canaliculatus_F_contig11407:3789..40291696845579.2985015-CDS-H-canaliculatus_F_contig11407:3789..4029Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11407 3790..4029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11407.1243.1

>prot_H-canaliculatus_F_contig11407.1243.1 ID=prot_H-canaliculatus_F_contig11407.1243.1|Name=mRNA_H-canaliculatus_F_contig11407.1243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=266bp
PLRTLGKTLAAVATLGTGNSLGPEGPAVELGVASSRYVSAMSNLSVQRQR
MLLGAGAAAGVAAGFNAPIAGIFFALEIVKDTFNTNYNSKSFIAATLLCA
VVSALMAKIGLHDELSLRPAAYNLESPLIELPLYLGLGVVAGLVAVMFKY
FSRKSSDVFKGNFPGFGWMKDVPQWSKPIMMAAVTGAVGVFFPQVLFFGY
DTLDKLLANTGSYSLPLLCFLCVAKALLTAGALGSGLVGGTFAPSLFLGA
TAGAAYQRILQVGAE*
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mRNA from alignment at H-canaliculatus_F_contig11407:951..4029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11407.1243.1 ID=mRNA_H-canaliculatus_F_contig11407.1243.1|Name=mRNA_H-canaliculatus_F_contig11407.1243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3079bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11407:951..4029- (Hapterophycus canaliculatus Oshoro5f female)
CCACTCAGAACCCTGGGGAAAACCTTGGCAGCTGTTGCGACCCTCGGGAC GGGTAACTCGCTCGGGCCGGAAGGGCCGGCGGTAGAGTTGGGCGTGGCTT CTTCTCGCTACGTGTCAGCCATGTCCAACCTGTCCGTCCAGAGGCAGCGG ATGCTGCTGGGGGCGGGGGCGGCGGCGGGGGTGGCGGCGGGGTTCAACGC TCCCATCGCAGGAATTTTCTTCGCGTTGGAGATCGTCAAGGTTAGGCCGT GGTTTTGCTTGGTCCGAGTCAAGGCGTTGGAGTTGTGGCCGCGGTTGTTG TGATCGTCGTGGTCGTCGCTGCCGCCACCAAGCACATGTCGGTGTTGACT TCTCTGCGTGGACGACTCTGTTGATAGCTCGTAGCGCTGTGGCCTCTGGG TCCCGTCTCAGAGAGGAACTCCGTGACCATTCTTGTTTTTGCCACCCCGG AGAACAAGAACGCCGTGCGCCACACCCATTCGGCACAAATGAGTCAGGTT CCCAACGACAGCAGTAACACCACTGGAATACCGCACGAAAAGGCAGTGGG AGCCGTATGCCAGTGGGAGCAGCAACAGAATAGCGGGATCACAGGCTCTA CGCGCCATTCCCTCCTTTCACCGCCGCCATGCTACCATCGATACCCGTCC CTTATTTTTATTTTTGCGTTCGCAGGACACGTTCAACACGAACTACAACA GCAAGTCTTTCATAGCGGCCACTCTCCTGTGCGCGGTGGTTTCGGCGCTG ATGGCCAAGATAGGCCTTCACGACGAGCTGTCCTTGCGGCCGGCCGCATA CAACTTGGAGTCACCGCTGATAGAGCTGCCCCTGTACCTCGGCCTGGGGG TGGTGGCCGGGCTGGTGGCGGTGATGTTCAAGTATTTCTCGCGGAAGGTA TGCGGCATTCTTGGCTTTGCTCTGCTTTGACAACCGTTCGGACCTCTATC GGATGTATGATACTTCGAAGTATCGCAAGTATGATGTGCGTCTTCTTCTT GTTTTCTCCCACAATGTGTTGGTGGTTCATGCCTGCTTCATTCCGAGCCC GTTGTATTTTCGAACAGCAGGTGCTGCGCCTGATTTGTTTCCGGCGGCAT GTGTGTCGCATGTGTTCGGGGGCATACTGCGTGTACTGCTTTTTCTGCTA ACTATTCTGATCATTTTTCTGCGCAGTCATACACTTGGATTCTTGATAAT TGCATTTCTAGGGGTGCCAATGGAACCCCGTCGCAAAAGTTCGTCCCATG CTCAAAAGCAACAACCCACGCCTGGTGCCAAACGTGTCACGCTATAGAAC GATCAACGCATTCGTAGAGCTATCAGGCACCTGCAAGTATCAACACAGAA GTGCGCAGGGGTCCGCCTCACGAGCCATCTTGGTACCCAGGCCACCTTCC GAGGTGCTCGCTGTGCACCCCGCGGCAGCTTAAGCCTGACACGTCGGCGA AAATTTGGTGCTGTCTTTCCCGCCGACGTGGTAGGGATGCGAGGTCGTTT CGAGGTCTAAAGAGCACGGTAGTGATGCATCCATGCTCATAACAAGACTA GAAGTTCTACCCGTACCCCCTACGCGGCCTGTTGCTCAGAGCTCGGACGT CTTCAAGGGGAATTTCCCTGGATTCGGATGGATGAAGGACGTGCCGCAGT GGTCCAAACCGATCATGATGGCGGCAGTAACGGGAGCTGTCGGTGTATTT TTCCCGCAGGTGTGTCGACGTCGTCGTCGTTGTTATTGTTGTTGTTGTGG GTGTTGTTGTTGTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTCGCT ACTGCTGTTGCTGTTGCTGTTGCTGTTGATGGTGTTGGTGGTGTTGGTGG TGTTGGTGGTGTTGGTGGTGTTGGTGGTGCTACTTCCGTCATTGTCGTCA TAGCTTCTTCCACGAGGTTCTTGCTGGTTTTGGCCGTGGCTCGGAAAGAA CACAAAAAGCCTGTCTTGAGATATGGGTAAAAGTGCCACCTATTCGCACC TGGTGTGTCTTGCTTGTGTTCGTTTCTTTATCTTTTCGCTGTGATGTGTT CGCATGCTTCACACGGTATATCTAGAGAACGGAGTAGCTTACGTCTTGCT TGCCCTTCCCCTACCTGTCGGTCTTACTGCTACAAGTACCCTTGCCGACA GGAGCAGCTTTTGTTTCGTAGGTACGGTTATTTAGCGTTGTCGGTCGGAC CAAGCTCTACGCCTCCTGTTGCTCCGACGATCCTCACGCGACATACCTTT CGGAGCCAATTTCCGAACACGAACCGGTCCTCGAACCGGTCCTTGACGTG CGACTTTTACATGCCGCAGGTTCTCTTCTTCGGCTACGACACCCTGGACA AGCTTCTCGCCAACACCGGCTCCTACAGCCTGCCGCTGCTCTGCTTCTTA TGCGTCGCGAAGGTGACTCTTCGGTGCGGTTGTTGTTGCCGTCGTTTTTT TCTCAGTCGCGTACGCTGCTGCCGATGCGGCTGCTACCACCGCTACTGCT CCTTCGAAAGGCACGCCGAAACATTTCAGCGCGGTTTGGTCCGCAGAGGT TGCGTTGTTTACTCTTCCCCAGAGGATACAAGTATCTCTTCGTGATCGTG TGCAATCATTCCCTGTCCGCGTGCGATAACGCTCTCTTTCAAGAAAAACA TAGCGACGCCATACGAACACTTCCTGAGGTACGTTGTGCGAGGCGTAGCT TGAGGCTTCTGTTGGGTTCCGAACAATAAGGCTCTCTTCGTCCAGACAGG CGGAGTTGAATCAGTTACAGGTAGGCTAGAAAAGGGGGGGCTCCAGCTAT TCCGACAAACCTTCCACCGTGCATACCTTCACGGCGACCGGGTATCGCAG CGCCAACGACCTTTCCGCCGACGGACACCTCAGAGCCCCCTCTTCCCTAC GAAACCCCGAGACCTCCTCCGTACTAAACCCTGTCACGCTTGTGCGCTTG TGGCAGGCACTGCTGACAGCGGGTGCTCTGGGCTCCGGCCTCGTCGGCGG AACGTTTGCGCCGTCTCTCTTTCTCGGGGCCACGGCAGGCGCGGCTTACC AGCGGATCCTCCAGGTGGGAGCAGAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11407:951..4029-

>mRNA_H-canaliculatus_F_contig11407.1243.1 ID=mRNA_H-canaliculatus_F_contig11407.1243.1|Name=mRNA_H-canaliculatus_F_contig11407.1243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1596bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11407:951..4029- (Hapterophycus canaliculatus Oshoro5f female)
CCACTCAGAACCCTGGGGAAAACCTTGGCAGCTGTTGCGACCCTCGGGAC
GGGTAACTCGCTCGGGCCGGAAGGGCCGGCGGTAGAGTTGGGCGTGGCTT
CTTCTCGCTACGTGTCAGCCATGTCCAACCTGTCCGTCCAGAGGCAGCGG
ATGCTGCTGGGGGCGGGGGCGGCGGCGGGGGTGGCGGCGGGGTTCAACGC
TCCCATCGCAGGAATTTTCTTCGCGTTGGAGATCGTCAAGCCACTCAGAA
CCCTGGGGAAAACCTTGGCAGCTGTTGCGACCCTCGGGACGGGTAACTCG
CTCGGGCCGGAAGGGCCGGCGGTAGAGTTGGGCGTGGCTTCTTCTCGCTA
CGTGTCAGCCATGTCCAACCTGTCCGTCCAGAGGCAGCGGATGCTGCTGG
GGGCGGGGGCGGCGGCGGGGGTGGCGGCGGGGTTCAACGCTCCCATCGCA
GGAATTTTCTTCGCGTTGGAGATCGTCAAGGACACGTTCAACACGAACTA
CAACAGCAAGTCTTTCATAGCGGCCACTCTCCTGTGCGCGGTGGTTTCGG
CGCTGATGGCCAAGATAGGCCTTCACGACGAGCTGTCCTTGCGGCCGGCC
GCATACAACTTGGAGTCACCGCTGATAGAGCTGCCCCTGTACCTCGGCCT
GGGGGTGGTGGCCGGGCTGGTGGCGGTGATGTTCAAGTATTTCTCGCGGA
AGGACACGTTCAACACGAACTACAACAGCAAGTCTTTCATAGCGGCCACT
CTCCTGTGCGCGGTGGTTTCGGCGCTGATGGCCAAGATAGGCCTTCACGA
CGAGCTGTCCTTGCGGCCGGCCGCATACAACTTGGAGTCACCGCTGATAG
AGCTGCCCCTGTACCTCGGCCTGGGGGTGGTGGCCGGGCTGGTGGCGGTG
ATGTTCAAGTATTTCTCGCGGAAGAGCTCGGACGTCTTCAAGGGGAATTT
CCCTGGATTCGGATGGATGAAGGACGTGCCGCAGTGGTCCAAACCGATCA
TGATGGCGGCAGTAACGGGAGCTGTCGGTGTATTTTTCCCGCAGAGCTCG
GACGTCTTCAAGGGGAATTTCCCTGGATTCGGATGGATGAAGGACGTGCC
GCAGTGGTCCAAACCGATCATGATGGCGGCAGTAACGGGAGCTGTCGGTG
TATTTTTCCCGCAGGTTCTCTTCTTCGGCTACGACACCCTGGACAAGCTT
CTCGCCAACACCGGCTCCTACAGCCTGCCGCTGCTCTGCTTCTTATGCGT
CGCGAAGGTTCTCTTCTTCGGCTACGACACCCTGGACAAGCTTCTCGCCA
ACACCGGCTCCTACAGCCTGCCGCTGCTCTGCTTCTTATGCGTCGCGAAG
GCACTGCTGACAGCGGGTGCTCTGGGCTCCGGCCTCGTCGGCGGAACGTT
TGCGCCGTCTCTCTTTCTCGGGGCCACGGCAGGCGCGGCTTACCAGCGGA
TCCTCCAGGTGGGAGCAGAGTAGGCACTGCTGACAGCGGGTGCTCTGGGC
TCCGGCCTCGTCGGCGGAACGTTTGCGCCGTCTCTCTTTCTCGGGGCCAC
GGCAGGCGCGGCTTACCAGCGGATCCTCCAGGTGGGAGCAGAGTAG
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