mRNA_H-canaliculatus_F_contig11392.1233.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11392.1233.1
Unique NamemRNA_H-canaliculatus_F_contig11392.1233.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11392.1233.1 vs. uniprot
Match: D8LBU8_ECTSI (Similar to centromere protein E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU8_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 8.740e-89
Identity = 212/327 (64.83%), Postives = 232/327 (70.95%), Query Frame = 1 
Query:    4 LRGKNESLRVEMDRRLHQINQEKGDLSEKMEESIRELKEREDFLHSQLEATGXXXXXIQEAQASQISEVEERLRLSNEDRERLKADARKTKAQSKSEARWRARAEDVMAGRAADLERAHAEVAAMKHQGVELRHLEAENKDLKARIERQEAFHKRRMEKEKKEKRGIR--SGHSSRASVGGSGGGTASGRT--QLLPLPPLMGSYGDXXXXXXXXXXXXXXXXXSRRPSMTPTSAGRGAEGXXXXXXXXXX-RELFASERSHSGSSPRRTGXXXXCGSGSSPCFFSSPESSSRKADVADKENKVLQAHPKQAR---APAWEAGGESG 960
            LR KNESLRVEMDRRLH +NQEKGDL+EKMEESIRELKERE+ LH QLEATG     IQEAQ+++ISE+EE+LRL+NEDRERLKADARK KA SKSEARWRARAEDVMAGRAADLERA+AEVAAMK QGVELRH+EAENKDLKARIERQEAFHKRRMEKEK+EKR  R  SG S R   G +GG  ASGR   QLLPLPPLM +YG+                 SRR SMTPTSA RG + XXXXXXXXXX RELF+SER  S S             GS               + ADKEN+V Q     A+   APAWE  G  G
Sbjct:  302 LRNKNESLRVEMDRRLHALNQEKGDLAEKMEESIRELKERENLLHGQLEATGRENKEIQEAQSAEISEMEEQLRLANEDRERLKADARKAKAHSKSEARWRARAEDVMAGRAADLERANAEVAAMKQQGVELRHMEAENKDLKARIERQEAFHKRRMEKEKREKRAGRPVSGGSGRVPPGPAGG-AASGRAAAQLLPLPPLM-TYGEDDGRGA-----------SRRLSMTPTSASRGGDXXXXXXXXXXXXRELFSSERPRSASEAH----------GSGXXXXXXXXXXXXXXNHADKENRVQQKQAAAAQRRGAPAWEGNGGGG 605
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BLAST of mRNA_H-canaliculatus_F_contig11392.1233.1 vs. uniprot
Match: A0A6H5KXI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI9_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.390e-64
Identity = 150/238 (63.03%), Postives = 166/238 (69.75%), Query Frame = 1 
Query:    4 LRGKNESLRVEMDRRLHQINQEKGDLSEKMEESIRELKEREDFLHSQLEATGXXXXXIQEAQASQISEVEERLRLSNEDRERLKADARKTKAQSKSEARWRARAEDVMAGRAADLERAHAEVAAMKHQGVELRHLEAENKDLKARIERQEAFHKRRMEKEKKEKRGIR--SGHSSRASVGGSGGGTASGRT--QLLPLPPLMGSYGDXXXXXXXXXXXXXXXXXSRRPSMTPTSAGRG 705
            LR KNESLRVEMDRRLH +NQEKGDL+EKMEESIRELK+RE+ LH QLEATG     IQEAQA++ISE+EE+LRL+NEDRERLKADARK KA                          H++VAAMKHQGVELRH+EAENKDLKARIERQEAFHKRRME+EK+EKR  R  SG   R   G +GG  ASGR   QLLPLPPLM SYG+                 SRR SMTPTSA RG
Sbjct:  103 LRSKNESLRVEMDRRLHALNQEKGDLAEKMEESIRELKDRENLLHGQLEATGRENKEIQEAQAAEISEMEEQLRLANEDRERLKADARKAKA--------------------------HSKVAAMKHQGVELRHMEAENKDLKARIERQEAFHKRRMEREKREKRAGRPVSGGCGRVPPGPAGG-AASGRAAAQLLPLPPLM-SYGEDDARGG-----------SRRLSMTPTSATRG 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11392.1233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBU8_ECTSI8.740e-8964.83Similar to centromere protein E n=1 Tax=Ectocarpus... [more]
A0A6H5KXI9_9PHAE1.390e-6463.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11392contigH-canaliculatus_F_contig11392:591..3510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to centromere protein E
Ec32 orthologEc-27_002630.1
Exons6
Model size960
Cds size960
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11392.1233.1prot_H-canaliculatus_F_contig11392.1233.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11392 591..3510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.8688915-CDS-H-canaliculatus_F_contig11392:590..6791622928822.8688915-CDS-H-canaliculatus_F_contig11392:590..679Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 591..679 +
1696845578.2991583-CDS-H-canaliculatus_F_contig11392:590..6791696845578.2991583-CDS-H-canaliculatus_F_contig11392:590..679Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 591..679 +
1622928822.8834696-CDS-H-canaliculatus_F_contig11392:918..9731622928822.8834696-CDS-H-canaliculatus_F_contig11392:918..973Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 919..973 +
1696845578.3076284-CDS-H-canaliculatus_F_contig11392:918..9731696845578.3076284-CDS-H-canaliculatus_F_contig11392:918..973Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 919..973 +
1622928822.8958871-CDS-H-canaliculatus_F_contig11392:1388..15321622928822.8958871-CDS-H-canaliculatus_F_contig11392:1388..1532Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 1389..1532 +
1696845578.3160033-CDS-H-canaliculatus_F_contig11392:1388..15321696845578.3160033-CDS-H-canaliculatus_F_contig11392:1388..1532Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 1389..1532 +
1622928822.907333-CDS-H-canaliculatus_F_contig11392:2008..20861622928822.907333-CDS-H-canaliculatus_F_contig11392:2008..2086Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 2009..2086 +
1696845578.3262339-CDS-H-canaliculatus_F_contig11392:2008..20861696845578.3262339-CDS-H-canaliculatus_F_contig11392:2008..2086Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 2009..2086 +
1622928822.928401-CDS-H-canaliculatus_F_contig11392:2327..25231622928822.928401-CDS-H-canaliculatus_F_contig11392:2327..2523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 2328..2523 +
1696845578.3348658-CDS-H-canaliculatus_F_contig11392:2327..25231696845578.3348658-CDS-H-canaliculatus_F_contig11392:2327..2523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 2328..2523 +
1622928822.9472938-CDS-H-canaliculatus_F_contig11392:3112..35101622928822.9472938-CDS-H-canaliculatus_F_contig11392:3112..3510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 3113..3510 +
1696845578.3436947-CDS-H-canaliculatus_F_contig11392:3112..35101696845578.3436947-CDS-H-canaliculatus_F_contig11392:3112..3510Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11392 3113..3510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11392.1233.1

>prot_H-canaliculatus_F_contig11392.1233.1 ID=prot_H-canaliculatus_F_contig11392.1233.1|Name=mRNA_H-canaliculatus_F_contig11392.1233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=320bp
QLRGKNESLRVEMDRRLHQINQEKGDLSEKMEESIRELKEREDFLHSQLE
ATGRENKEIQEAQASQISEVEERLRLSNEDRERLKADARKTKAQSKSEAR
WRARAEDVMAGRAADLERAHAEVAAMKHQGVELRHLEAENKDLKARIERQ
EAFHKRRMEKEKKEKRGIRSGHSSRASVGGSGGGTASGRTQLLPLPPLMG
SYGDDDEDDEGGGGGGGGGGGSRRPSMTPTSAGRGAEGDGGGSGGGGRRE
LFASERSHSGSSPRRTGSGSGCGSGSSPCFFSSPESSSRKADVADKENKV
LQAHPKQARAPAWEAGGESG
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mRNA from alignment at H-canaliculatus_F_contig11392:591..3510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11392.1233.1 ID=mRNA_H-canaliculatus_F_contig11392.1233.1|Name=mRNA_H-canaliculatus_F_contig11392.1233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2920bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11392:591..3510+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTTCGCGGTAAGAACGAGAGCCTACGGGTGGAGATGGACCGGCGGCT
CCACCAAATCAACCAAGAGAAGGGGGACCTGTCGGAAAAGTGAGCGAGAG
AAAGGGGGATTTCGACAACGAAGACCAGGCGTGCCCGCCGGGGCTGTCGA
TCTTGCGAACGCGTACAAGCTTGTAGAACTCGCGGGCTGAAGGGTGCCAC
GCGTGCGGCATCTACCGCGGCTGAATGGTCGGCAAGCACGGGGTCCCGTG
GTGGTCGAGGCTGCCGCGGCTGTTGTTGTTGACCTCGGCGTTTCCACCGC
AAATGTTGCTTGTTTGTCGACGCCTCAGGATGGAGGAGTCGATCCGGGAG
CTGAAGGAGCGGGAAGACTTTCTCCACAGCCAGGTGCGAAAGCCAACCCA
GGCCCCGTCCGTCCTTCCCCACCATGTTTGGGCGCACCGCTTGGTGGTTT
GTTCCGGTGGCAGGATATCTCTGTCTCTCGCCCTCCCTCCCCTCTCTCCC
GCACGATCTGTTTGTCGCCGCTTCCCACCTCCTTCCCTTACACCTTTACA
GGCGATGACGCCGATGGGATCGCAGCACCGACCTGCTGCAAAGCGCGCGC
GGTGTGTGAAGCATTGAGCCGTCGCTGGTGGCCACTGAACCCCATCGCGC
CTGCCACACCTGTACGCTGCCTCATTGGAGCACCGCACACACCCGAACCC
CCCCAGCTTTTCAACCGTACGTCCGCCGGCGCATTCGTGCTCCTATATTC
ACGTGAGCCTACATACAACGCGCCTTGACTGTCGCGACCGAACCACAGCT
CGAGGCGACGGGAAGGGAGAACAAAGAAATTCAAGAGGCGCAGGCGTCCC
AGATCAGCGAGGTCGAGGAGCGGCTGCGGTTGTCCAATGAGGACAGGGAG
CGCCTTAAGGCCGACGCGAGGAAGACCAAGGCGCAGAGCAAGGTGGGTCG
GCTGGTGGTGCCGGGCGGACAGGCGGCGGGGGGAGCGTGCCGGCCAGTAT
CGTCGTTGCTGCGGCTAGACCGGGGTTGTCTCGACGTGATACGCCGCCGT
CGCCGCCTTCGCCTCCGCGCCAGATGGGTCATGGCGTGCCGCGGTCTGGG
CGCATCTCGTGCGTTCCCCGTCGACAAAGCGGGAGCAGGGTGCTATACTG
CACCGCTATGCTTGAGTTGCTTGGTCGTTTCGAGTGCTGGTGCAGTGCCT
GCTTGGCTCGCACGTGTGCGCACACGGAACCGACTACCGTGGATATAGTA
CGAGGTATGCCGTAGCACCTTGGTGTACGCGGATAGCAGCAGCGTCTCGA
GAAGATTTTTTTACGCATCCTTCCTTTCTTCTACACCGGCTGCTGCTGCT
GCTGCTGCTTCTGCTGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGCCGC
GGATGTTGTTTCGCGCAGTCGGAGGCCAGATGGCGGGCCCGGGCGGAGGA
CGTGATGGCTGGCAGGGCGGCTGACCTCGAGCGGGCACACGCAGAGGTGC
GCTTCGAGAGCGCACGCGCGCGAGCTCTCTGCACGTCTGCGGTAGTGTTC
GCACGCATGGCGTCAGTGTAGGTCGGTGCCGACGAAACTGCCCACGCGTT
CGAAAATCGCCGTGGTTACAGCGTTGTCAAGAGTGACTTCTTGCTCCATG
CAGAATCAAAGACGCGTTTTGATGGCCCTTGTCGTCGATTTTTCAAGGCA
CGAAAAACGAAGCTAAAAAGGCATGTCCCTTCTTCAGGTGGCCGCGATGA
AGCATCAGGGCGTGGAGCTGCGACACCTGGAGGCGGAGAACAAGGACCTC
AAGGCCCGCATAGAGAGACAGGAGGCGTTCCACAAGAGGCGGATGGAGAA
AGAGAAGAAGGAGAAGAGGGGGATCCGATCGGGGCACTCAAGCAGGGCGT
CGGTCGGCGGCAGCGGCGGCGGCACCGCCTCCGGTAAGGGGGAGGCAGAA
GGAGGGACGGAGGGAGAGAAATCAAACTCTGCTGACTATCAGTTGATTGA
ATCCTCTCGTGATCCGCTGCTGTTGACCATACAATTTGTCCAAGAGGGAG
GACCGCTGCCCCTCCTTCGACGAGACGAAGGGGGGAATAATAAGGCAAGA
AACAGCTACAGATCTCTATGGTAAAGGGTGGGCGGGTAGATCGGACTCAA
GCACTTTCGCTGTCGGCCGGCTGTCTTGCGCCGGGTGAGACACGCTGGTT
CCACAAGCCGAAGTTGATGCTGGTACGATACGTACGCGCCAATGCCTTCG
TGCAGCGGCTGCACTCGTTCCAACGCGGCTTTCAACCACTCGGCGTCTCT
GCTGCCCGATCGCGTGGTGCGTGCGCGACGTAAAAACCCGCCTCATCCAA
CCCCATCCCACCTCTGCTTCCACTCTCCCCTCCCGTTTCTCGTTGGCCTT
GCTTGTTCTTCGATCACACTGTTCCCGTCCCCGCAAAACATTCACCGACG
TTTCGAAAACTCGCTCTCGACCGTCACCTTCGTGTTGTTGCCGGGTCAAA
ACGGCACCGGTGCGGATTCCAGGGCGGACCCAACTCCTTCCCTTGCCGCC
GCTAATGGGCTCCTACGGCGACGACGACGAGGACGACGAGGGTGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGAAGCCGGAGACCGTCAATGACGCCGACT
TCGGCCGGGCGGGGGGCCGAAGGCGATGGCGGCGGCAGCGGCGGCGGCGG
CAGGCGTGAGTTGTTCGCGTCCGAGCGTTCTCATTCCGGCTCCTCGCCGC
GCCGCACCGGCAGCGGAAGCGGCTGCGGCAGCGGGAGCAGCCCCTGCTTC
TTTTCCAGCCCGGAGTCGTCCTCGCGCAAGGCGGACGTCGCCGACAAGGA
GAACAAGGTGCTGCAGGCGCACCCGAAACAGGCGCGAGCGCCCGCGTGGG
AGGCGGGGGGCGAGAGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11392:591..3510+

>mRNA_H-canaliculatus_F_contig11392.1233.1 ID=mRNA_H-canaliculatus_F_contig11392.1233.1|Name=mRNA_H-canaliculatus_F_contig11392.1233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1920bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11392:591..3510+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTTCGCGGTAAGAACGAGAGCCTACGGGTGGAGATGGACCGGCGGCT
CCACCAAATCAACCAAGAGAAGGGGGACCTGTCGGAAAACAGCTTCGCGG
TAAGAACGAGAGCCTACGGGTGGAGATGGACCGGCGGCTCCACCAAATCA
ACCAAGAGAAGGGGGACCTGTCGGAAAAGATGGAGGAGTCGATCCGGGAG
CTGAAGGAGCGGGAAGACTTTCTCCACAGCCAGGATGGAGGAGTCGATCC
GGGAGCTGAAGGAGCGGGAAGACTTTCTCCACAGCCAGCTCGAGGCGACG
GGAAGGGAGAACAAAGAAATTCAAGAGGCGCAGGCGTCCCAGATCAGCGA
GGTCGAGGAGCGGCTGCGGTTGTCCAATGAGGACAGGGAGCGCCTTAAGG
CCGACGCGAGGAAGACCAAGGCGCAGAGCAAGCTCGAGGCGACGGGAAGG
GAGAACAAAGAAATTCAAGAGGCGCAGGCGTCCCAGATCAGCGAGGTCGA
GGAGCGGCTGCGGTTGTCCAATGAGGACAGGGAGCGCCTTAAGGCCGACG
CGAGGAAGACCAAGGCGCAGAGCAAGTCGGAGGCCAGATGGCGGGCCCGG
GCGGAGGACGTGATGGCTGGCAGGGCGGCTGACCTCGAGCGGGCACACGC
AGAGTCGGAGGCCAGATGGCGGGCCCGGGCGGAGGACGTGATGGCTGGCA
GGGCGGCTGACCTCGAGCGGGCACACGCAGAGGTGGCCGCGATGAAGCAT
CAGGGCGTGGAGCTGCGACACCTGGAGGCGGAGAACAAGGACCTCAAGGC
CCGCATAGAGAGACAGGAGGCGTTCCACAAGAGGCGGATGGAGAAAGAGA
AGAAGGAGAAGAGGGGGATCCGATCGGGGCACTCAAGCAGGGCGTCGGTC
GGCGGCAGCGGCGGCGGCACCGCCTCCGGTGGCCGCGATGAAGCATCAGG
GCGTGGAGCTGCGACACCTGGAGGCGGAGAACAAGGACCTCAAGGCCCGC
ATAGAGAGACAGGAGGCGTTCCACAAGAGGCGGATGGAGAAAGAGAAGAA
GGAGAAGAGGGGGATCCGATCGGGGCACTCAAGCAGGGCGTCGGTCGGCG
GCAGCGGCGGCGGCACCGCCTCCGGGCGGACCCAACTCCTTCCCTTGCCG
CCGCTAATGGGCTCCTACGGCGACGACGACGAGGACGACGAGGGTGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGAAGCCGGAGACCGTCAATGACGCCGA
CTTCGGCCGGGCGGGGGGCCGAAGGCGATGGCGGCGGCAGCGGCGGCGGC
GGCAGGCGTGAGTTGTTCGCGTCCGAGCGTTCTCATTCCGGCTCCTCGCC
GCGCCGCACCGGCAGCGGAAGCGGCTGCGGCAGCGGGAGCAGCCCCTGCT
TCTTTTCCAGCCCGGAGTCGTCCTCGCGCAAGGCGGACGTCGCCGACAAG
GAGAACAAGGTGCTGCAGGCGCACCCGAAACAGGCGCGAGCGCCCGCGTG
GGAGGCGGGGGGCGAGAGCGGCGGCGGACCCAACTCCTTCCCTTGCCGCC
GCTAATGGGCTCCTACGGCGACGACGACGAGGACGACGAGGGTGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGAAGCCGGAGACCGTCAATGACGCCGACT
TCGGCCGGGCGGGGGGCCGAAGGCGATGGCGGCGGCAGCGGCGGCGGCGG
CAGGCGTGAGTTGTTCGCGTCCGAGCGTTCTCATTCCGGCTCCTCGCCGC
GCCGCACCGGCAGCGGAAGCGGCTGCGGCAGCGGGAGCAGCCCCTGCTTC
TTTTCCAGCCCGGAGTCGTCCTCGCGCAAGGCGGACGTCGCCGACAAGGA
GAACAAGGTGCTGCAGGCGCACCCGAAACAGGCGCGAGCGCCCGCGTGGG
AGGCGGGGGGCGAGAGCGGC
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