mRNA_H-canaliculatus_F_contig11380.1227.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI) HSP 1 Score: 409 bits (1052), Expect = 3.110e-132 Identity = 228/317 (71.92%), Postives = 251/317 (79.18%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTET-----------------LSAGAFLHPSDLPQPEEGG----LEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAY-SEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 QALYEAGYITYMRTDRPSLS EAAGVAE AVRDSFGDE+VRKGDAK VKVKGSQEAHEAIRPAL+ GA +AT T+ + + G FLHP++LP E+GG LEEQ RALYDLVYRRTLASAMAESEADFTTVSLGA G+S G G+E VDVV +ASGKTTVFEGFLKAY EG D+++P D QETELP++VEGG VVCE A+P PHRTSPPRR++EASFIKELEAKGVGRPSTYASIIGTLRTRTYVN+QGR+LTPSLTGFVVADLLREHFPDFTDTGFTAK+ Sbjct: 415 QALYEAGYITYMRTDRPSLSKEAAGVAEGAVRDSFGDEYVRKGDAKTVKVKGSQEAHEAIRPALV--------GATPAATDTADGKQAREEEXXXXXXXXXXXXXTTGGRFLHPTELPVEEDGGGGRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGD--GEEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEDARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKM 721
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE) HSP 1 Score: 388 bits (996), Expect = 9.470e-127 Identity = 223/320 (69.69%), Postives = 242/320 (75.62%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTET------------------LSAGAFLHPSDLPQPEEG------GLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYS-EGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 QALYEAGYITYMRTDRPSLS EAA VAE AVRDSFG E+VRKGDAK VKVKGSQEAHEAIRPAL+ GA +AT T + G FLHP++LP E GLEEQ RALYDLVYRRTLASAMAESEADFTTVSLGA G+S G G+E VDVV +ASGKTTVF+GFLKAY EG D+++P D QETELP++VEGG VVCE A+P PHRTSPPRRY SFIKELEAKGVGRPSTYASIIGTLRTRTYVN+QGR+LTPSLTGFVVADLLREHFPDFTDTGFTAK+ Sbjct: 116 QALYEAGYITYMRTDRPSLSKEAARVAEGAVRDSFGGEYVRKGDAKVVKVKGSQEAHEAIRPALV--------GATPAATDTHDGKQAGEEXXXXXXXXXXXXXXXXXGGRFLHPTELPVEEXXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGD--GEEVVDVVLKASGKTTVFDGFLKAYRVEGADESVPGGAAAEGDDQETELPLLVEGGEVVCEDARPAPHRTSPPRRYR--SFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKM 423
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A2T4XF30_9BACT (DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2T4XF30_9BACT) HSP 1 Score: 209 bits (533), Expect = 2.380e-58 Identity = 124/299 (41.47%), Postives = 170/299 (56.86%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEF----VRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 Q LYE G ITYMRTD +LSN+A A AV +G E+ VR +KA KG+QEAHEAIRPA AFLHP E+ G+ +++ LYDL+++RT+A+ MA+++ +FT V+ A D+++ F++SGK +F GF +AY EG DD A E QE +LP + EG TV ++ + + H T PP RYTEA+ +KELE +GVGRPSTYASII T++ R Y G+TL P+ F V +LL HFPD D+ FT+++ Sbjct: 310 QKLYEKGLITYMRTDSTNLSNQAIQAARSAVESQYGSEYLFERVRNYSSKA---KGAQEAHEAIRPA---------------------------GSAFLHP------EKAGVAGREKKLYDLIWKRTIATQMADAQLEFTNVTT---------TATDKDLSADFKSSGKKILFPGFFRAYVEGSDDPEAALEN-----QEIDLPALAEGDTVSLQELETIGHETKPPARYTEATLVKELENRGVGRPSTYASIISTIQDREYATKDGKTLVPTFIAFAVTELLEAHFPDLVDSDFTSEL 558
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A0M2PVX9_PROHO (DNA topoisomerase 1 n=1 Tax=Prochlorothrix hollandica PCC 9006 = CALU 1027 TaxID=317619 RepID=A0A0M2PVX9_PROHO) HSP 1 Score: 206 bits (523), Expect = 1.010e-56 Identity = 122/296 (41.22%), Postives = 159/296 (53.72%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVR-KGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 Q+LYE GYITYMRTD LS++A A V +G E++ K K K +QEAHEAIRPA S P+E GL +Q+R LYDL+++RT+AS MA++ TV + + + FRASGK F GF +AY EG DD A E QE LP + G T C++ V H T PP R+TEA+ +K LE++G+GRPSTYASIIGT+ R Y ++QG LTP+ T F V + L +HFPD DTGFTA++ Sbjct: 329 QSLYERGYITYMRTDSVHLSDQAITAARTCVEQKYGSEYLSPKPRQYTTKSKNAQEAHEAIRPA---------------------------------GSQFRTPQETGLVDQERKLYDLIWKRTVASQMADARQTLLTVQVTVE-------------EATFRASGKRIDFPGFFRAYVEGSDDPDAALEN-----QEVLLPPLALGDTPACQELNAVGHETQPPARFTEATLVKALESEGIGRPSTYASIIGTILDRDYAHLQGNALTPTFTAFAVTEFLEKHFPDLVDTGFTARM 573
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: K9SQT0_9SYNE (DNA topoisomerase 1 n=1 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SQT0_9SYNE) HSP 1 Score: 202 bits (515), Expect = 6.030e-56 Identity = 121/296 (40.88%), Postives = 161/296 (54.39%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVR-KGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 QALYE G+ITYMRTD LS++A A V +G+ ++ K A K KG+QEAHEAIRPA + P++ GL ++ +LYDL+++RT+AS MA++ +V +G + D +FR+SGK F GF +AY EG DD A EG QE LP ++ G VC+Q +PV H T PP RYTEAS +K LE++G+GRPSTYASIIGT+ R Y + TL P+ T F V LL EHFP+ D FT+K+ Sbjct: 310 QALYEQGFITYMRTDSVHLSDQAISAARNCVSQMYGENYLSPKPRQYATKSKGAQEAHEAIRPA---------------------------------GASFRTPQQTGLSGREFSLYDLIWKRTIASQMADARQTMISVQIGVE-------------DAIFRSSGKRIDFAGFFRAYVEGSDDPDAAIEG-----QEIVLPKLIIGDHPVCQQLQPVGHETQPPARYTEASLVKTLESEGIGRPSTYASIIGTICDRGYAQLTHNTLIPTFTAFAVTSLLEEHFPNLVDPSFTSKM 554
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: UPI001EDA1AE5 (type I DNA topoisomerase n=2 Tax=unclassified Rhodohalobacter TaxID=2621813 RepID=UPI001EDA1AE5) HSP 1 Score: 202 bits (515), Expect = 8.090e-56 Identity = 120/295 (40.68%), Postives = 161/295 (54.58%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 Q LYE GYITYMRTD +LS +A A V +G+E++ K K KG+QEAHEAIRPA +F HP E+ GL +Q LYDL+++RT+A+ MAE+ +FT V++ A+ + F++SGK +F GF +AY EG DD A E QE LP M EG + + + H T PP RYTEA+ +KELE GVGRPSTYA+IIGT++ R Y +G+ L P+ T F V +LL EHFP D+ FT+++ Sbjct: 312 QKLYENGYITYMRTDSTNLSGQAISAARNEVEKQYGEEYLFKRVRTYGKAKGAQEAHEAIRPA---------------------------GSSFTHP------EKAGLSGRQFKLYDLIWKRTIATQMAEARLEFTNVTISAE---------HDGTKADFKSSGKKILFPGFFRAYVEGSDDPEAAIEN-----QEIYLPEMKEGDATELHELESISHETKPPARYTEATLVKELEKSGVGRPSTYATIIGTIQERGYAKSEGKALVPTYTAFAVTELLEEHFPHVVDSKFTSQL 559
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: UPI001EFFCE5D (type I DNA topoisomerase n=2 Tax=Synechococcus TaxID=1129 RepID=UPI001EFFCE5D) HSP 1 Score: 202 bits (514), Expect = 1.940e-55 Identity = 123/296 (41.55%), Postives = 160/296 (54.05%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVR-KGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 Q LYE GYITYMRTD LS++A A V +G E++ K K KG+QEAHEAIRPA S+ P + L Q+ ALYDL+++RT+AS MAE+ TTV +G + D VFRASGK F GF +AY EG DD A E +E LP++ +G C++ +PV H T PP R+TEAS +K LE++G+GRPSTYA+I+ T+ +R YV G L P+ T F V DLL +HFPD +T FTAK+ Sbjct: 310 QKLYEEGYITYMRTDSVHLSDQAISAARACVSSMYGKEYLSPKPRQYTTKAKGAQEAHEAIRPA---------------------------------GSEFRLPNQTPLSGQELALYDLIWKRTVASQMAEARQTHTTVLIGVE-------------DAVFRASGKRIDFPGFFRAYVEGSDDPDAALED-----REVHLPLLRQGDHPECQKLEPVGHETQPPARFTEASLVKVLESEGIGRPSTYATILNTIVSRGYVKPMGNALVPTYTAFAVTDLLEKHFPDLVNTRFTAKM 554
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A2T2RSE2_9CYAN (DNA topoisomerase 1 n=1 Tax=Cyanobacteria bacterium QH_9_48_43 TaxID=1919126 RepID=A0A2T2RSE2_9CYAN) HSP 1 Score: 201 bits (512), Expect = 2.910e-55 Identity = 126/296 (42.57%), Postives = 161/296 (54.39%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVR-KGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 Q+LYE GYITYMRTD LS +A + V+ +G E++ K + K KG+QEAHEAIRPA + P+E GL+ ++R+LYDL+++RT+AS MAE+ +V++ + DAG FRASGK F GF +AY EG DD A E QE LP + T C Q + V H T PP RYTEAS +K LE++G+GRPSTYASIIGT+ R Y M+G L P+ T F V LL EHFPD DTGFTA + Sbjct: 310 QSLYEQGYITYMRTDSVHLSEQAIAASRECVQQKYGKEYLSPKPRQYSTKSKGAQEAHEAIRPA---------------------------------GASFRTPQETGLQGRERSLYDLIWKRTVASQMAEARLTQISVNVKVE------DAG-------FRASGKRIDFAGFFRAYVEGSDDPEAALEN-----QEVILPSLQAEDTPHCTQLEAVAHETQPPARYTEASLVKTLESEGIGRPSTYASIIGTIVDRGYAQMRGSALVPTFTAFAVTSLLEEHFPDLVDTGFTANM 554
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A8J7G7X4_9CYAN (DNA topoisomerase 1 n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A8J7G7X4_9CYAN) HSP 1 Score: 200 bits (509), Expect = 8.120e-55 Identity = 124/296 (41.89%), Postives = 159/296 (53.72%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAK-AVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 Q+LYE GYITYMRTD +LS +A A V +G E++ + A K KG+QEAHEAIRPA S P+E GL++++ LYDL+++RT+A+ MAE TV + AG+ E FRA+GK F GF +AY EG DD A E QE LP + G CE+ +P+ H T PP RYTEAS +K LE +G+GRPSTYASIIGT+ R Y M +L P+ T F V LL +HFPD DTGFTA++ Sbjct: 310 QSLYEQGYITYMRTDSTNLSQQAIAAARSCVEQMYGREYLSPEPRQYATKAKGAQEAHEAIRPA---------------------------------GSTFRTPQETGLKDRELRLYDLIWKRTVATQMAEVRQTHITVQI---------QAGEAE----FRATGKRIDFAGFFRAYVEGSDDPDAAIED-----QEVILPPLRVGDHPSCEELEPIGHETQPPARYTEASLVKTLENEGIGRPSTYASIIGTIIDRGYAQMINNSLVPTFTAFAVTSLLEKHFPDLVDTGFTARM 554
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Match: A0A521DC44_9BACT (DNA topoisomerase 1 n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521DC44_9BACT) HSP 1 Score: 199 bits (507), Expect = 1.050e-54 Identity = 122/299 (40.80%), Postives = 164/299 (54.85%), Query Frame = 1 Query: 1 QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEF----VRKGDAKAVKVKGSQEAHEAIRPALITGGAPVGAGAAVSATKTSATTETLSAGAFLHPSDLPQPEEGGLEEQQRALYDLVYRRTLASAMAESEADFTTVSLGADGISAGGDAGDEEVDVVFRASGKTTVFEGFLKAYSEGPDDALPATEGVTWDAQETELPVMVEGGTVVCEQAKPVPHRTSPPRRYTEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNMQGRTLTPSLTGFVVADLLREHFPDFTDTGFTAKV 885 Q LYE G+ITYMRTD LS +A G A AV + +G+++ VR + K KG+QEAHEAIRPA S +PE+ GL ++ LYDL+++RT+A+ MAE+E +FT V++ A + D FRA GK +F G+ +AY EG DD A E QE LP M EG + + V H T PP R+TEA+ +KELE +GVGRPSTYASII T++ R Y +G+TL P+ T F V+ LL +HFPD D+ FT+ + Sbjct: 312 QKLYEKGFITYMRTDSTRLSGQAIGAARDAVTEEYGEDYLFERVRNYNKKG---KGAQEAHEAIRPA---------------------------------GSRFVKPEKAGLSGREFKLYDLIWKRTIATQMAEAELEFTNVTIRAT---------NNGTDADFRAGGKKILFPGYFRAYVEGSDDPEAALEN-----QENFLPAMNEGDSTELDDLNFVSHETKPPARFTEATLVKELEKRGVGRPSTYASIISTIQDRGYAKSEGKTLIPTFTAFAVSTLLEKHFPDLVDSDFTSSL 560 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11380.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11380.1227.1 >prot_H-canaliculatus_F_contig11380.1227.1 ID=prot_H-canaliculatus_F_contig11380.1227.1|Name=mRNA_H-canaliculatus_F_contig11380.1227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=295bp QALYEAGYITYMRTDRPSLSNEAAGVAELAVRDSFGDEFVRKGDAKAVKVback to top mRNA from alignment at H-canaliculatus_F_contig11380:331..3603- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11380.1227.1 ID=mRNA_H-canaliculatus_F_contig11380.1227.1|Name=mRNA_H-canaliculatus_F_contig11380.1227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3273bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11380:331..3603- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11380:331..3603- >mRNA_H-canaliculatus_F_contig11380.1227.1 ID=mRNA_H-canaliculatus_F_contig11380.1227.1|Name=mRNA_H-canaliculatus_F_contig11380.1227.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1770bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11380:331..3603- (Hapterophycus canaliculatus Oshoro5f female)back to top |