mRNA_H-canaliculatus_F_contig11362.1214.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11362.1214.1
Unique NamemRNA_H-canaliculatus_F_contig11362.1214.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11362.1214.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 1.640e-117
Identity = 195/212 (91.98%), Postives = 201/212 (94.81%), Query Frame = 1 
Query:    7 QENLARIARYGVAGGADSKLAGHLSSVLGLQMPTAAAGTASKYGAQNIRRFLTHVHAVSIAPPWVSALLTAMRVPTKNAVQVKKVIEEAIEVNKVLSTPKAVLQAMARSISPDIYKSFTARYTKDIALEALVDHLIDNPSDVVGLELGPGDEPLLPGTL---CRALVRYLATAPESMAFRRPVDTTVFTDYHNFVEDPCDLRTIDRRLEASE 633
            QENLARIARYGVAGG DS+  G LSSVLGLQMP+AAAGTASKYGAQNIRRFL HVHA+SIAPPWV+ALLTAMRVPTKNAVQVKKVI+EAIEVNK LSTPK VL+AMARSISPDIYKSFTARYTKDIALEALVDHLIDNPSDVVGLELGPGDEPLLPGTL   CRALVRYLATAPESMAFRRPVDTTVFTDYH FVEDPCDLRTIDRRLEASE
Sbjct:  580 QENLARIARYGVAGGGDSRFGGQLSSVLGLQMPSAAAGTASKYGAQNIRRFLAHVHAISIAPPWVAALLTAMRVPTKNAVQVKKVIQEAIEVNKGLSTPKPVLEAMARSISPDIYKSFTARYTKDIALEALVDHLIDNPSDVVGLELGPGDEPLLPGTLLPMCRALVRYLATAPESMAFRRPVDTTVFTDYHKFVEDPCDLRTIDRRLEASE 791
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BLAST of mRNA_H-canaliculatus_F_contig11362.1214.1 vs. uniprot
Match: A0A6H5J6B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 7.470e-16
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    7 QENLARIARYGVAGGADSKLAGHLSSVLGLQMPTAAAGTASKYGAQNIRR 156
            QENLARIARYGVAGG DS+  G LSSVLGLQMP+AAAGTASKYGAQNIRR
Sbjct:  744 QENLARIARYGVAGGGDSRFGGQLSSVLGLQMPSAAAGTASKYGAQNIRR 793
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BLAST of mRNA_H-canaliculatus_F_contig11362.1214.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.840e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:  526 MAFRRPVDTTVFTDYHNFVEDPCDLRTIDRRLEASE 633
            MAFRRPVDTTVFTDYH FVEDPCDLRTIDRRLEASE
Sbjct:    1 MAFRRPVDTTVFTDYHKFVEDPCDLRTIDRRLEASE 36
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11362.1214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.640e-11791.98Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J6B9_9PHAE7.470e-1688.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8B2_9PHAE3.840e-1397.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11362contigH-canaliculatus_F_contig11362:188..3679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size636
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11362.1214.1prot_H-canaliculatus_F_contig11362.1214.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11362 188..3679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928819.9568088-CDS-H-canaliculatus_F_contig11362:187..3421622928819.9568088-CDS-H-canaliculatus_F_contig11362:187..342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 188..342 +
1696845577.2071357-CDS-H-canaliculatus_F_contig11362:187..3421696845577.2071357-CDS-H-canaliculatus_F_contig11362:187..342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 188..342 +
1622928819.9744077-CDS-H-canaliculatus_F_contig11362:817..9291622928819.9744077-CDS-H-canaliculatus_F_contig11362:817..929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 818..929 +
1696845577.2174418-CDS-H-canaliculatus_F_contig11362:817..9291696845577.2174418-CDS-H-canaliculatus_F_contig11362:817..929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 818..929 +
1622928819.9892306-CDS-H-canaliculatus_F_contig11362:1624..17501622928819.9892306-CDS-H-canaliculatus_F_contig11362:1624..1750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 1625..1750 +
1696845577.2266743-CDS-H-canaliculatus_F_contig11362:1624..17501696845577.2266743-CDS-H-canaliculatus_F_contig11362:1624..1750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 1625..1750 +
1622928820.004831-CDS-H-canaliculatus_F_contig11362:2501..25901622928820.004831-CDS-H-canaliculatus_F_contig11362:2501..2590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 2502..2590 +
1696845577.236359-CDS-H-canaliculatus_F_contig11362:2501..25901696845577.236359-CDS-H-canaliculatus_F_contig11362:2501..2590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 2502..2590 +
1622928820.0201547-CDS-H-canaliculatus_F_contig11362:3525..36791622928820.0201547-CDS-H-canaliculatus_F_contig11362:3525..3679Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 3526..3679 +
1696845577.2450867-CDS-H-canaliculatus_F_contig11362:3525..36791696845577.2450867-CDS-H-canaliculatus_F_contig11362:3525..3679Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11362 3526..3679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11362.1214.1

>prot_H-canaliculatus_F_contig11362.1214.1 ID=prot_H-canaliculatus_F_contig11362.1214.1|Name=mRNA_H-canaliculatus_F_contig11362.1214.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=212bp
MLQENLARIARYGVAGGADSKLAGHLSSVLGLQMPTAAAGTASKYGAQNI
RRFLTHVHAVSIAPPWVSALLTAMRVPTKNAVQVKKVIEEAIEVNKVLST
PKAVLQAMARSISPDIYKSFTARYTKDIALEALVDHLIDNPSDVVGLELG
PGDEPLLPGTLCRALVRYLATAPESMAFRRPVDTTVFTDYHNFVEDPCDL
RTIDRRLEASE*
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mRNA from alignment at H-canaliculatus_F_contig11362:188..3679+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11362.1214.1 ID=mRNA_H-canaliculatus_F_contig11362.1214.1|Name=mRNA_H-canaliculatus_F_contig11362.1214.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11362:188..3679+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCAGGAAAACTTGGCCAGGATCGCGCGTTACGGGGTGGCGGGAGG
CGCCGACTCGAAGCTGGCGGGGCACCTGTCCTCGGTGCTCGGGCTGCAGA
TGCCAACCGCCGCGGCCGGCACGGCTTCGAAGTACGGAGCGCAAAACATC
AGGAGGTGAGCTCTCGCGTCCATCGGTGGGTAGGTAGGTTGGTAGCCAGG
CGCCCACGCCGGCGGTGGGAAACGGGAAAGGTAGGAGACGGACGAGTGCG
CGAGTTTAGAAATCGCGCGCGCGCGAGTTGACCTTGCCTTGGCGAGGGGC
ACCGACGGGGATGCCGCGTAGCGGCGGCTTTCACGGCCGTTCGGTACACG
GTGTGTCGCGCGCCGGCGTGCGTGCGTTTCGTGCGGTTGTGCTGTCGGGG
TCGGTGGCATCGACGGGGGCGACGTGTGTGCCCAACTAGGGGAGACGTCG
GATTCCGCGGGGCCCCTTCTCTTCGATGTTCTAATCTCTAATTTCCTTCC
TGAACGTGTTTCTCCCTGTTTGCTCGCCTTCTGCCCTGTGCCGCCTGATT
CTGCGGTCGGCCTTGTGGTGCGATGGGACGCCATGCCATGCCATGCTGTA
CGACGGATCCGGGGGCCCGGGGCGGGGCAGGTTTTTGACCCACGTGCACG
CGGTTTCCATCGCACCTCCCTGGGTGTCGGCGCTGCTGACGGCGATGCGC
GTGCCGACCAAGAACGCCGTCCAAGTCAAGAAAGTAATCGAGGTGAGCAT
CTTCTTCGTGACTCCCAGCCAAGCAGCACATCACTTTCGAGCTCAGCCTC
GCGATCTTGGTTGAGCTGAGCCTCTTGGGTTGGCGAGAGGGCACAGAGGT
GAGTCGGGGGGTCCAGTCGTGCGCGAACGCAGACGCGTGTGACGTAGGTG
GTGCGGGGTTGCCGACGGCGGTACGACACCCCCCTTCGTCATTTGTACCT
TGGGCAACCGGCGTTTCGTGTGAAAATCCGTGTCTGTGCCCGTTTCCCTG
GTTTGCTACGGCCGTGCTCGAAAAACACGTCTCTCGGGGGGTTTAATGCT
CTCTCACTCGCCAGTCTTCCCTCGTGCGACAGCGGTTTTGTAGACAGCGT
CTGCTCAAGAGAGTCCCGCCCGCTCTTGCAGCCTCAAGTTTAGCTTTCGA
GGCTTCAGTACGATTCCATCGGGGTTTCACGTCTCTCCCTTTTTTCTCGG
TCGATACTCACGAGTTTGGCCCGGGCATCGTAGATCGAGCTGCTGAGCCT
TCGACGGGGACGCATCTCATTGCATCGGTTACCGCACCCCCCCCCCCCCC
TCGCTTCCCGCCGCGTGCCCCCCTCGAAGCGCCTCGCGATTACATCAACT
CGAACACCCGAAACACAACCACGTAGAAACGCAGTGCAACCATCAGCCGC
CTGTTCCGTTTCACCGCGTGATTGACGCGTTGAACAGGAGGCCATCGAGG
TGAACAAGGTTCTGTCCACCCCCAAGGCGGTGCTCCAGGCGATGGCGAGG
TCGATCAGCCCCGACATCTACAAGAGCTTCACCGCGCGGTACACGAAGGA
CATCGCGCTCGAGGTGAGGCGCCGATTGCGTGCACCACGCGCGTCTCGAA
CGAACGACCGATCAGGGGCTCCGCGGGGGGGAGGGAAGGGGGGGGTATGA
TCCAAGCGAAAAGCCGAAAGTAGTACGTGAGCCACGTAGGGAGAGCGATG
CCACCGGCTGAGAACAGAGGGCGGTACGACGCGCCTAGAAAAAAGATAGA
GGACAGCGGAGATGGTGGTAGGAAGGGGCCGCGCGTATTGCAGCGTTCGT
TGGCCTCTTGGCCTCCTCTCCGGATTTTTTTAGTTTCTGCGCTTCCGATG
CTCGGCCGACGGGCACGCCTCCGTCACTGCGGCAGAAGGAGGCGTTTTTT
TTGCTCTGCCCGTGTTGGGAAGGGGCGACGGCGTGCCGGGCCGCGAGGGT
GTGACTTTCAGTGGTCGCAGTGTTCAGGAAGGCGTTTTGTCTTGGAATCT
TGCGCAAAGAGAAGCGCCGGAGAGGGTCGGTCGGCCGGGCGTGGGGTAAA
GCGGATGTGGCCGTACGCGACCGTGTCATGGTCGTTGACGGAGGGATCAT
ATCCCGCAAGTTTGTTGGGTCCCTCTGTCGATGCACAAGCCCGCCTCCGT
TGTTGTCGCCGCCGCTGGTGGCCGTTGCTGCCGCTGGTGACAACCATCGT
CGCCGCCGCCACTGATGCCTGTCGCTCCCCCCGCCTTCATCCGCACCTTT
CCATCCCCTCGTCAACACCGATCGACCCCCCCCCCCCTCGGCCTTCCTTC
TCTCTTACTCCCAGGCCCTGGTAGACCACCTCATCGACAACCCGTCCGAC
GTTGTCGGACTCGAGCTCGGCCCCGGAGACGAGCCTCTCCTCCCCGGAAC
CTTGTTACCGATGCGCGGCGTCAGGGCTACGGACAATCCTCCCCCAAGCT
TCCACGGGTCTGGGCCGGGCGGCGGCGGCGGCGGGATGATGGCCGATGGG
GGAGGAGCTGGCGGGGGCGGTAGCGGCGGGGAAGAGGGCGGAGGGAGTTC
CCTGCCCCCGGTGGTGGCGGAGAGCGCGGCGGATAGCAGCGGCGGCGCCA
AGTCGGAGAGCATGCGCAGGTGAAGGGGAGGGTTCGTCCCAGCAGCAGCA
GCAGCTGCGGCTGCTGCTGCTGCTGTTGGCGCTCGTAGCCCTGCTCTGTT
GTGGACAGGATCGTAGTGGTGGTGGCGGTATTGGCTTTGGTATTTGAGTG
TTGTTGATTGTTGGGGATGGTGTTGGTGGTGGTGGGGGTGATTGTGGGGG
GAGTGCCAGCGGTGATGACTGCTGTCTCGGCTTGCGACCTCTCCTTTCTG
CATCGGTGTAGCTTCGGGGAGACAACCGCGCCGGCTCGAGCCAGCAAGCG
TGTCCGCTGTCTCTGACGAGGAGCCCTGGGCCGCACGTTTCGTTCCTCGC
GCAAGACGGCCGTTTCCGCGCCCGCGCGGCTTTGGGTTTGAAGAGCCTCT
CCGACCCTTCCTCGCGTTCTACTGCGCACGCGGCGTTTTTATGTGTCTCG
ACAATACAGTATTCATGTGCCCCCCCCCCCGTCCCATCCCGTCCCGCCTT
TGGATGCATGTGCTGAGCCCCCGCAGGCTTTCCCAGATGCCCGCAGAGTG
TTTCGCGAAATCATGGAAAGGTTTCGCGTTGCCCGTATCGTAAATCTCGC
TAACAGGCCAAGGAGTGCCTCGATCCCTCTTGACACAACACCATCGCCCT
GCGTGCCGCTCTCGGGCGCCGCCTTGCTATCCTGCTGCCCCTCTGCTGCC
CCTCTGCTGCCGTACCCGCCGCGTTCTCGCTTGGCCAGGTGCCGAGCCCT
GGTGCGGTATCTCGCGACGGCCCCCGAGAGCATGGCTTTCCGCAGGCCGG
TGGATACGACCGTCTTCACCGACTACCACAATTTCGTCGAGGACCCGTGT
GATCTCCGAACCATCGACAGGCGCCTGGAGGCCAGCGAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11362:188..3679+

>mRNA_H-canaliculatus_F_contig11362.1214.1 ID=mRNA_H-canaliculatus_F_contig11362.1214.1|Name=mRNA_H-canaliculatus_F_contig11362.1214.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1272bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11362:188..3679+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCAGGAAAACTTGGCCAGGATCGCGCGTTACGGGGTGGCGGGAGG
CGCCGACTCGAAGCTGGCGGGGCACCTGTCCTCGGTGCTCGGGCTGCAGA
TGCCAACCGCCGCGGCCGGCACGGCTTCGAAGTACGGAGCGCAAAACATC
AGGAGATGCTGCAGGAAAACTTGGCCAGGATCGCGCGTTACGGGGTGGCG
GGAGGCGCCGACTCGAAGCTGGCGGGGCACCTGTCCTCGGTGCTCGGGCT
GCAGATGCCAACCGCCGCGGCCGGCACGGCTTCGAAGTACGGAGCGCAAA
ACATCAGGAGGTTTTTGACCCACGTGCACGCGGTTTCCATCGCACCTCCC
TGGGTGTCGGCGCTGCTGACGGCGATGCGCGTGCCGACCAAGAACGCCGT
CCAAGTCAAGAAAGTAATCGAGGTTTTTGACCCACGTGCACGCGGTTTCC
ATCGCACCTCCCTGGGTGTCGGCGCTGCTGACGGCGATGCGCGTGCCGAC
CAAGAACGCCGTCCAAGTCAAGAAAGTAATCGAGGAGGCCATCGAGGTGA
ACAAGGTTCTGTCCACCCCCAAGGCGGTGCTCCAGGCGATGGCGAGGTCG
ATCAGCCCCGACATCTACAAGAGCTTCACCGCGCGGTACACGAAGGACAT
CGCGCTCGAGGAGGCCATCGAGGTGAACAAGGTTCTGTCCACCCCCAAGG
CGGTGCTCCAGGCGATGGCGAGGTCGATCAGCCCCGACATCTACAAGAGC
TTCACCGCGCGGTACACGAAGGACATCGCGCTCGAGGCCCTGGTAGACCA
CCTCATCGACAACCCGTCCGACGTTGTCGGACTCGAGCTCGGCCCCGGAG
ACGAGCCTCTCCTCCCCGGAACCTTGCCCTGGTAGACCACCTCATCGACA
ACCCGTCCGACGTTGTCGGACTCGAGCTCGGCCCCGGAGACGAGCCTCTC
CTCCCCGGAACCTTGTGCCGAGCCCTGGTGCGGTATCTCGCGACGGCCCC
CGAGAGCATGGCTTTCCGCAGGCCGGTGGATACGACCGTCTTCACCGACT
ACCACAATTTCGTCGAGGACCCGTGTGATCTCCGAACCATCGACAGGCGC
CTGGAGGCCAGCGAGTGAGTGCCGAGCCCTGGTGCGGTATCTCGCGACGG
CCCCCGAGAGCATGGCTTTCCGCAGGCCGGTGGATACGACCGTCTTCACC
GACTACCACAATTTCGTCGAGGACCCGTGTGATCTCCGAACCATCGACAG
GCGCCTGGAGGCCAGCGAGTGA
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